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3VBW
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Exploitation of hydrogen bonding constraints and flat hydrophobic energy landscapes in Pim-1 kinase needle screening and inhibitor design
Descriptor: 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile, Serine/threonine-protein kinase pim-1
Authors:Liu, J.
Deposit date:2012-01-02
Release date:2012-03-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Implications of promiscuous Pim-1 kinase fragment inhibitor hydrophobic interactions for fragment-based drug design.
J.Med.Chem., 55, 2012
3VQ8
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BU of 3vq8 by Molmil
HIV-1 IN core domain in complex with (3R)-3,4-dihydro-2H-chromen-3-ylmethanol
Descriptor: (3R)-3,4-dihydro-2H-chromen-3-ylmethanol, CADMIUM ION, CHLORIDE ION, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-20
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
3VI0
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BU of 3vi0 by Molmil
Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
Authors:Kouyama, T, Zhang, J.
Deposit date:2011-09-13
Release date:2012-06-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
3VVS
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BU of 3vvs by Molmil
Crystal structure of MATE in complex with MaD3S
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein, macrocyclic peptide
Authors:Tanaka, Y, Ishitani, R, Nureki, O.
Deposit date:2012-07-27
Release date:2013-04-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3O12
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BU of 3o12 by Molmil
The crystal structure of a functionally unknown protein from Saccharomyces cerevisiae.
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Uncharacterized protein YJL217W
Authors:Zhang, R, Tan, K, Xu, X, Cui, H, Chin, S, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-07-20
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of a functionally unknown protein from Saccharomyces cerevisiae.
TO BE PUBLISHED
3NRS
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BU of 3nrs by Molmil
Crystal structure of ligand-free bifunctional folylpolyglutamate synthase/dihydrofolate synthase from yersinia pestis c092
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Dihydrofolate:folylpolyglutamate synthetase, GLYCEROL, ...
Authors:Nocek, B, Maltseva, N, Makowska-grzyska, M, Papazisi, L, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-06-30
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ligand-free bifunctional folylpolyglutamate synthase/dihydrofolate synthase from yersinia pestis c092
TO BE PUBLISHED
3O4Q
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BU of 3o4q by Molmil
Crystal structure of the Rous Associated Virus Integrase catalytic domain A182T in citrate buffer pH 6.2
Descriptor: CITRATE ANION, integrase
Authors:Ballandras, A, Robert, X, Gouet, P.
Deposit date:2010-07-27
Release date:2011-08-31
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A crystal structure of the catalytic core domain of an avian sarcoma and leukemia virus integrase suggests an alternate dimeric assembly.
Plos One, 6, 2011
3VQ7
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BU of 3vq7 by Molmil
HIV-1 IN core domain in complex with 4-(1H-pyrrol-1-yl)aniline
Descriptor: 4-(1H-pyrrol-1-yl)aniline, CADMIUM ION, POL polyprotein, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-20
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
3NWY
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BU of 3nwy by Molmil
Structure and allosteric regulation of the uridine monophosphate kinase from Mycobacterium tuberculosis
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, URIDINE-5'-DIPHOSPHATE, Uridylate kinase
Authors:Labesse, G, Munier-Lehmann, H.
Deposit date:2010-07-12
Release date:2010-08-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structural and functional characterization of the Mycobacterium tuberculosis uridine monophosphate kinase: insights into the allosteric regulation.
Nucleic Acids Res., 39, 2011
3NYK
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BU of 3nyk by Molmil
The structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis
Descriptor: COBALT (II) ION, Pseudoazurin
Authors:Gessmann, R, Petratos, K.
Deposit date:2010-07-15
Release date:2010-10-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The crystal structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis.
Biopolymers, 95, 2011
3VQA
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BU of 3vqa by Molmil
HIV-1 IN core domain in complex with 1-benzothiophen-6-amine 1,1-dioxide
Descriptor: 1-benzothiophen-6-amine 1,1-dioxide, CADMIUM ION, POL polyprotein, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-20
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
3VVO
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BU of 3vvo by Molmil
Crystal structure of MATE in the bent conformation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein
Authors:Tanaka, Y, Ishitani, R, Nureki, O.
Deposit date:2012-07-27
Release date:2013-04-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3VW9
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BU of 3vw9 by Molmil
Human Glyoxalase I with an N-hydroxypyridone inhibitor
Descriptor: 1-hydroxy-6-[1-(3-methoxypropyl)-1H-pyrrolo[2,3-b]pyridin-5-yl]-4-phenylpyridin-2(1H)-one, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Lactoylglutathione lyase, ...
Authors:Fukami, T.A, Irie, M, Matsuura, T.
Deposit date:2012-08-10
Release date:2012-12-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Design and evaluation of azaindole-substituted N-hydroxypyridones as glyoxalase I inhibitors
Bioorg.Med.Chem.Lett., 22, 2012
3NY7
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BU of 3ny7 by Molmil
STAS domain of YchM bound to ACP
Descriptor: 3-{[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-3-oxopropanoic acid, Acyl carrier protein, GLYCEROL, ...
Authors:Moraes, T.F, Reithmeier, R, Strynadka, N.C.S.
Deposit date:2010-07-14
Release date:2010-12-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:Structure of a SLC26 Anion Transporter STAS Domain in Complex with Acyl Carrier Protein: Implications for E. coli YchM in Fatty Acid Metabolism.
Structure, 18, 2010
3VUX
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BU of 3vux by Molmil
Crystal structure of A20 ZF7 in complex with linear ubiquitin, form II
Descriptor: 1,2-ETHANEDIOL, POTASSIUM ION, Polyubiquitin-C, ...
Authors:Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2012-07-09
Release date:2013-02-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF-kappaB regulation
Embo J., 31, 2012
3VVN
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BU of 3vvn by Molmil
Crystal structure of MATE in the straight conformation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein
Authors:Tanaka, Y, Ishitani, R, Nureki, O.
Deposit date:2012-07-27
Release date:2013-04-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3O53
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BU of 3o53 by Molmil
Crystal Structure of LRIM1 leucine-rich repeat domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COBALT (II) ION, ...
Authors:Baxter, R.H.G, Steinert, S, Chelliah, Y, Volohonsky, G, Levashina, E.A, Deisenhofer, J.
Deposit date:2010-07-27
Release date:2010-09-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:A heterodimeric complex of the LRR proteins LRIM1 and APL1C regulates complement-like immunity in Anopheles gambiae.
Proc.Natl.Acad.Sci.USA, 107, 2010
3O6N
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BU of 3o6n by Molmil
Crystal Structure of APL1 leucine-rich repeat domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, APL1
Authors:Baxter, R.H.G, Steinert, S, Chelliah, Y, Volohonsky, G, Levashina, E.A, Deisenhofer, J.
Deposit date:2010-07-29
Release date:2010-09-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A heterodimeric complex of the LRR proteins LRIM1 and APL1C regulates complement-like immunity in Anopheles gambiae.
Proc.Natl.Acad.Sci.USA, 107, 2010
3O73
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BU of 3o73 by Molmil
Crystal structure of quinone reductase 2 in complex with the indolequinone MAC627
Descriptor: 5-[(4-aminobutyl)amino]-1,2-dimethyl-3-[(4-nitrophenoxy)methyl]-1H-indole-4,7-dione, FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
Authors:Dufour, M, Yan, C, Colucci, M.A, Siegel, D, Li, Y, De Matteis, C.I, Ross, D, Moody, C.J.
Deposit date:2010-07-30
Release date:2011-05-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism-Based Inhibition of Quinone Reductase 2 (NQO2): Selectivity for NQO2 over NQO1 and Structural Basis for Flavoprotein Inhibition.
Chembiochem, 12, 2011
3O6T
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BU of 3o6t by Molmil
Mycobacterium tuberculosis thioredoxin C C40S mutant in Complex with Quinol Inhibitor PMX464
Descriptor: 4-(1,3-benzothiazol-2-yl)-4-hydroxycyclohexa-2,5-dien-1-one, TRIETHYLENE GLYCOL, Thioredoxin
Authors:Hall, G, Emsley, J.
Deposit date:2010-07-29
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Mycobacterium tuberculosis thioredoxin in complex with quinol inhibitor PMX464
Protein Sci., 20, 2011
3NUE
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BU of 3nue by Molmil
The structure of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase from mycobacterium tuberculosis complexed with tryptophan
Descriptor: CHLORIDE ION, GLYCEROL, MANGANESE (II) ION, ...
Authors:Parker, E.J, Jameson, G.B, Jiao, W, Webby, C.J, Baker, E.N, Baker, H.M.
Deposit date:2010-07-06
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Synergistic allostery, a sophisticated regulatory network for the control of aromatic amino acid biosynthesis in Mycobacterium tuberculosis
J.Biol.Chem., 285, 2010
3W0U
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BU of 3w0u by Molmil
human Glyoxalase I with an N-hydroxypyridone inhibitor
Descriptor: Lactoylglutathione lyase, N-[3-(1-Hydroxy-6-oxo-4-phenyl-1,6-dihydro-pyridin-2-yl)-5-methanesulfonylamino-phenyl]-methanesulfonamide, ZINC ION
Authors:Fukami, T.A, Irie, M, Matsuura, T.
Deposit date:2012-11-02
Release date:2013-11-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:N-Hydroxypyridone-based glyoxalase I inhibitors mimicking binding interactions of the substrate
to be published
3VZA
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BU of 3vza by Molmil
Crystal structure of the chicken Spc24-Spc25 globular domain in complex with CENP-T peptide
Descriptor: Centromere protein T, Spc24 protein, Uncharacterized protein
Authors:Nishino, T, Fukagawa, T.
Deposit date:2012-10-09
Release date:2013-04-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:CENP-T provides a structural platform for outer kinetochore assembly
Embo J., 32, 2013
3W04
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BU of 3w04 by Molmil
Crystal structure of Oryza sativa DWARF14 (D14)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T.
Deposit date:2012-10-19
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structures of D14 and D14L in the strigolactone and karrikin signaling pathways
Genes Cells, 18, 2013
3W36
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BU of 3w36 by Molmil
Crystal structure of holo-type bacterial Vanadium-dependent chloroperoxidase
Descriptor: NapH1, VANADATE ION
Authors:Liscombe, D.K, Miyanaga, A, Fielding, E, Bernhardt, P, Li, A, Winter, J.M, Gilson, M.K, Noel, J.P, Moore, B.S.
Deposit date:2012-12-11
Release date:2013-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis.
Biochemistry, 2022

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