PDB: 238582 resultsInfo pagesStatus searchChemie searchBIRD

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3D3R	Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1 Descriptor: Hydrogenase assembly chaperone hypC/hupF Authors: Kim, Y, Skarina, T, Onopriyenko, O, Edwards, A.M, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2008-05-12 Release date: 2008-05-27 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of the Hydrogenase Assembly Chaperone HypC/HupF Family Protein from Shewanella oneidensis MR-1. To be Published
9MF6	Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (ADP/5-O-phosphono-alpha-D-ribofuranose complex) Descriptor: 5-O-phosphono-alpha-D-ribofuranose, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-12-09 Release date: 2024-12-18 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (ADP/5-O-phosphono-alpha-D-ribofuranose complex) To be published
9MGJ	Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (mannose bound) Descriptor: GLYCEROL, Purine nucleoside phosphorylase, putative, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-12-11 Release date: 2024-12-18 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (mannose bound) To be published
3CRP	A heterospecific leucine zipper tetramer Descriptor: GCN4 leucine zipper, SODIUM ION Authors: Liu, J. Deposit date: 2008-04-07 Release date: 2008-10-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A heterospecific leucine zipper tetramer. Chem.Biol., 15, 2008
9MEA	Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/fructose-1,6-biphosphate complex) Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-12-06 Release date: 2024-12-18 Method: X-RAY DIFFRACTION (2.83 Å) Cite: Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/fructose-1,6-biphosphate complex) To be published
3CRV	XPD_Helicase Descriptor: CITRATE ANION, GLYCEROL, IRON/SULFUR CLUSTER, ... Authors: Fan, L, Arvai, A.S, Tainer, J.A. Deposit date: 2008-04-07 Release date: 2008-06-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations. Cell(Cambridge,Mass.), 133, 2008
3D3W	Structure of L-Xylulose Reductase with bound coenzyme, phosphate and hydroxide. Descriptor: L-xylulose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION Authors: Zhao, H.-T, El-Kabbani, O. Deposit date: 2008-05-12 Release date: 2009-04-21 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Structure/function analysis of a critical disulfide bond in the active site of L-xylulose reductase. Cell.Mol.Life Sci., 66, 2009
3CSQ	Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail Descriptor: Morphogenesis protein 1, ZINC ION Authors: Xiang, Y, Rossmann, M.G. Deposit date: 2008-04-10 Release date: 2008-07-01 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail. Proc.Natl.Acad.Sci.Usa, 105, 2008
3CTG	Crystal structure of reduced glutaredoxin 2 Descriptor: Glutaredoxin-2 Authors: Yu, J, Teng, Y.B, Zhou, C.Z. Deposit date: 2008-04-14 Release date: 2008-11-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural basis for the different activities of yeast Grx1 and Grx2. Biochim.Biophys.Acta, 1804, 2010
3D4U	Bovine thrombin-activatable fibrinolysis inhibitor (TAFIa) in complex with tick-derived carboxypeptidase inhibitor. Descriptor: ACETATE ION, Carboxypeptidase B2, Carboxypeptidase inhibitor, ... Authors: Sanglas, L, Valnickova, Z, Arolas, J.L, Pallares, I, Guevara, T, Sola, M, Kristensen, T, Enghild, J.J, Aviles, F.X, Gomis-Ruth, F.X. Deposit date: 2008-05-15 Release date: 2008-08-19 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure of activated thrombin-activatable fibrinolysis inhibitor, a molecular link between coagulation and fibrinolysis. Mol.Cell, 31, 2008
6YLJ	Structure of D169A/E171A double mutant of chitinase Chit42 from Trichoderma harzianum complexed with chitinhexaose. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Endochitinase 42, ... Authors: Jimenez-Ortega, E, Sanz-Aparicio, J. Deposit date: 2020-04-07 Release date: 2021-10-20 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural inspection and protein motions modelling of a fungal glycoside hydrolase family 18 chitinase by crystallography depicts a dynamic enzymatic mechanism Comput Struct Biotechnol J, 19, 2021
3D54	Structure of PurLQS from Thermotoga maritima Descriptor: ADENOSINE-5'-DIPHOSPHATE, Formylglycinamide ribonucleotide amidotransferase, Phosphoribosylformylglycinamidine synthase 1, ... Authors: Ealick, S.E, Morar, M. Deposit date: 2008-05-15 Release date: 2008-07-22 Last modified: 2025-03-26 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Formylglycinamide ribonucleotide amidotransferase from Thermotoga maritima: structural insights into complex formation. Biochemistry, 47, 2008
2I6Q	Complement component C2a Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C2a fragment, ... Authors: Milder, F.J, Raaijmakers, H.C.A, Vandeputte, D.A.A, Schouten, A, Huizinga, E.G, Romijn, R.A, Hemrika, W, Roos, A, Daha, M.R, Gros, P. Deposit date: 2006-08-29 Release date: 2006-10-17 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of complement component c2a: implications for convertase formation and substrate binding. Structure, 14, 2006
9MEC	Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/alpha-D-Glucose-6-phosphate complex) Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-12-06 Release date: 2024-12-18 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structure of Pyrophosphate-fructose 6-phosphate 1-phosphotransferase 1 (Pfk1) from Trichomonas vaginalis (AMP/alpha-D-Glucose-6-phosphate complex) To be published
3D6F	Crystal structure of human caspase-1 with a naturally-occurring Arg240->Gln substitution in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK) Descriptor: Caspase-1, N-[(benzyloxy)carbonyl]-L-valyl-N-[(2S)-1-carboxy-4-fluoro-3-oxobutan-2-yl]-L-alaninamide Authors: Rosen-Wolff, A, Roesler, J, Romanowski, M.J. Deposit date: 2008-05-19 Release date: 2010-03-02 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Mutated, structurally altered caspase-1 with decreased enzymatic and increased RIP2-meditated inflammatory activity leads to a new type of periodic fever (ICE fever). To be Published
6YN4	Structure of D169A/E171A double mutant of chitinase Chit42 from Trichoderma harzianum complexed with chitintetraose. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... Authors: Jimenez-Ortega, E, Sanz-Aparicio, J. Deposit date: 2020-04-10 Release date: 2021-10-20 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Structural inspection and protein motions modelling of a fungal glycoside hydrolase family 18 chitinase by crystallography depicts a dynamic enzymatic mechanism Comput Struct Biotechnol J, 19, 2021
2I5J	Crystal structure of HIV-1 reverse transcriptase (RT) in complex with DHBNH, an RNASE H inhibitor Descriptor: (E)-3,4-DIHYDROXY-N'-[(2-METHOXYNAPHTHALEN-1-YL)METHYLENE]BENZOHYDRAZIDE, MAGNESIUM ION, Reverse transcriptase/ribonuclease H P51 subunit, ... Authors: Himmel, D.M, Sarafianos, S.G, Knight, J.L, Levy, R.M, Arnold, E. Deposit date: 2006-08-24 Release date: 2006-12-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.15 Å) Cite: HIV-1 reverse transcriptase structure with RNase H inhibitor dihydroxy benzoyl naphthyl hydrazone bound at a novel site. Acs Chem.Biol., 1, 2006
3D57	TR Variant D355R Descriptor: SULFATE ION, Thyroid hormone receptor beta, [4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC ACID Authors: Jouravel, N. Deposit date: 2008-05-15 Release date: 2008-10-14 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Molecular basis for dimer formation of TRbeta variant D355R. Proteins, 75, 2008
3CTJ	Crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-met in complex with a aminopyridine based inhibitor Descriptor: 2-(4-fluorophenyl)-N-{[3-fluoro-4-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)phenyl]carbamoyl}acetamide, Hepatocyte growth factor receptor Authors: Sack, J. Deposit date: 2008-04-14 Release date: 2008-06-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Discovery of orally active pyrrolopyridine- and aminopyridine-based Met kinase inhibitors Bioorg.Med.Chem.Lett., 18, 2008
3D5W	Crystal structure of a phosphorylated Polo-like kinase 1 (Plk1) catalytic domain in complex with ADP. Descriptor: ADENOSINE-5'-DIPHOSPHATE, Polo-like kinase 1 Authors: Elling, R.A, Fucini, R.V, Romanowski, M.J. Deposit date: 2008-05-17 Release date: 2008-08-26 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structures of the wild-type and activated catalytic domains of Brachydanio rerio Polo-like kinase 1 (Plk1): changes in the active-site conformation and interactions with ligands. Acta Crystallogr.,Sect.D, 64, 2008
3CUN	Aminoacyl-tRNA synthetase ribozyme Descriptor: COBALT (II) ION, MAGNESIUM ION, POTASSIUM ION, ... Authors: Xiao, H, Murakami, H, Suga, H, Ferre-D'Amare, A.R. Deposit date: 2008-04-16 Release date: 2008-06-24 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature, 454, 2008
3CV7	Crystal structure of porcine aldehyde reductase ternary complex Descriptor: 3,5-dichloro-2-hydroxybenzoic acid, Alcohol dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... Authors: Carbone, V, El-Kabbani, O. Deposit date: 2008-04-18 Release date: 2008-10-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.412 Å) Cite: Structure of aldehyde reductase in ternary complex with coenzyme and the potent 20alpha-hydroxysteroid dehydrogenase inhibitor 3,5-dichlorosalicylic acid: Implications for inhibitor binding and selectivity Arch.Biochem.Biophys., 479, 2008
3D69	Crystal Structure of the Fab Fragment of an Anti-Factor IX Antibody 10C12 Descriptor: anti-factor IX antibody, 10C12 Authors: Shi, X.L, Huang, M.D, Zeng, T. Deposit date: 2008-05-19 Release date: 2009-03-31 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (3.77 Å) Cite: Crystal structure of Fab Fragment of an anti-Factor IX antibody 10C12 CHIN.J.STRUCT.CHEM., 27, 2008
5JRK	Crystal Structure of the Sphingopyxin I Lasso Peptide Isopeptidase SpI-IsoP (SeMet-derived) Descriptor: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein, beta-D-glucopyranose Authors: Fage, C.D, Hegemann, J.D, Bange, G, Marahiel, M.A. Deposit date: 2016-05-06 Release date: 2016-09-28 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase. Angew.Chem.Int.Ed.Engl., 55, 2016
3D7E	Enterococcus casseliflavus glycerol kinase mutant HIS232ALA complexed with glycerol Descriptor: GLYCEROL, Glycerol kinase Authors: Yeh, J.I, Vahedi-Faridi, A. Deposit date: 2008-05-21 Release date: 2009-04-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation Biochemistry, 48, 2009

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