PDB: 5653 resultsInfo pagesStatus searchChemie searchBIRD

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4ATZ	Ad5 knob in complex with a designed ankyrin repeat protein Descriptor: DESIGNED ANKYRIN REPEAT PROTEIN, Fiber protein Authors: Mittl, P.R.E, Hess, C, Dreier, B. Deposit date: 2012-05-11 Release date: 2013-02-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Development of a generic adenovirus delivery system based on structure-guided design of bispecific trimeric DARPin adapters. Proc. Natl. Acad. Sci. U.S.A., 110, 2013
6DR5	X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36 containing the I31Chg point mutation Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ORT-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORT-ALA-CHG-ILE-GLY-LEU-ORA-VAL Authors: Salveson, P.J, Nowick, J.S. Deposit date: 2018-06-11 Release date: 2018-10-17 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.079 Å) Cite: Repurposing Triphenylmethane Dyes to Bind to Trimers Derived from A beta. J. Am. Chem. Soc., 140, 2018
6DLM	DHD127 Descriptor: DHD127_A, DHD127_B Authors: Bick, M.J, Chen, Z, Baker, D. Deposit date: 2018-06-01 Release date: 2018-12-19 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.753 Å) Cite: Programmable design of orthogonal protein heterodimers. Nature, 565, 2019
8PF0	Diubiquitin-derived artificial binding protein (Affilin) variant Af1 specific to oncofetal fibronectin Descriptor: Affilin variant Af1 (77405), COPPER (II) ION, IMIDAZOLE Authors: Parthier, C, Katzschmann, A, Fiedler, E, Haupts, U, Reimann, A. Deposit date: 2023-06-15 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Ubiquitin-derived artificial binding proteins targeting oncofetal fibronectin reveal scaffold plasticity by beta-strand slippage to be published
3I2A	Crystal structure of a chimeric trypsin inhibitor protein STI(L)-WCI(S) Descriptor: CHLORIDE ION, Chymotrypsin inhibitor 3 Authors: Sen, U, Khamrui, S. Deposit date: 2009-06-29 Release date: 2010-02-02 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Identification of a novel set of scaffolding residues that are instrumental for the inhibitory property of Kunitz (STI) inhibitors. Protein Sci., 19, 2010
3I2X	Crystal structure of a chimeric trypsin inhibitor having reactive site loop of ETI on the scaffold of WCI Descriptor: Chymotrypsin inhibitor 3 Authors: Sen, U, Khamrui, S, Dasgupta, J, Dattagupta, J.K, Majumder, S. Deposit date: 2009-06-30 Release date: 2010-02-02 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Identification of a novel set of scaffolding residues that are instrumental for the inhibitory property of Kunitz (STI) inhibitors. Protein Sci., 19, 2010
6C52	Cross-alpha Amyloid-like Structure alphaTet Descriptor: Cross-alpha Amyloid-like Structure alphaTet, GLYCEROL Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
4AFU	Human Chymase - Fynomer Complex Descriptor: CHYMASE, FYNOMER Authors: Schlatter, D, Brack, S, Banner, D.W, Batey, S, Benz, J, Bertschinger, J, Huber, W, Joseph, C, Rufer, A, Van Der Kloosters, A, Weber, M, Grabulovski, D, Hennig, M. Deposit date: 2012-01-23 Release date: 2012-07-11 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Generation, Characterization and Structural Data of Chymase Binding Proteins Based on the Human Fyn Kinase SH3 Domain. Mabs, 4, 2012
6E5I	Heterogeneous-Backbone Mimics of a Designed Disulfide-Rich Protein: Orn turn Descriptor: Designed peptide NC_HEE_D1: Orn turn mutant Authors: Cabalteja, C.C, Mihalko, D.S, Horne, W.S. Deposit date: 2018-07-20 Release date: 2018-11-21 Last modified: 2020-01-01 Method: SOLUTION NMR Cite: Heterogeneous-Backbone Foldamer Mimics of a Computationally Designed, Disulfide-Rich Miniprotein. Chembiochem, 20, 2019
6C51	Cross-alpha Amyloid-like Structure alphaAmL Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Cross-alpha Amyloid-like Structure alphaAmL, PHOSPHATE ION Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6AWM	PawL-Derived Peptide PLP-4 Descriptor: GLY-LEU-LEU-GLY-ILE-THR-ASP Authors: Fisher, M, Mylne, J.S, Howard, M.J. Deposit date: 2017-09-05 Release date: 2018-03-07 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch. Plant Direct, 2, 2018
6H7I	Trpzip2 structure in presence of exogenous haloprotectant molecule. Descriptor: Trpzip2 Authors: Prior, S.H. Deposit date: 2018-07-31 Release date: 2019-08-14 Method: SOLUTION NMR Cite: Trpzip2 structure in presence of exogenous haloprotectant molecule. To Be Published
1TGG	RH3 DESIGNED RIGHT-HANDED COILED COIL TRIMER Descriptor: CHLORIDE ION, NICKEL (II) ION, right-handed coiled coil trimer Authors: Plecs, J.J, Harbury, P.B, Kim, P.S, Alber, T. Deposit date: 2004-05-28 Release date: 2004-10-12 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural test of the parameterized-backbone method for protein design J.Mol.Biol., 342, 2004
6DMA	DHD15_closed Descriptor: DHD15_closed_A, DHD15_closed_B Authors: Bick, M.J, Chen, Z, Baker, D. Deposit date: 2018-06-04 Release date: 2018-12-19 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.363 Å) Cite: Programmable design of orthogonal protein heterodimers. Nature, 565, 2019
6DR4	X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36 containing the I31V point mutation Descriptor: HEXANE-1,6-DIOL, ORN-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORN-ALA-VAL-ILE-GLY-LEU-ORN-VAL Authors: Salveson, P.J, Nowick, J.S. Deposit date: 2018-06-11 Release date: 2018-10-17 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (2.105 Å) Cite: Repurposing Triphenylmethane Dyes to Bind to Trimers Derived from A beta. J. Am. Chem. Soc., 140, 2018
6DKM	DHD131 Descriptor: DHD131_A, DHD131_B Authors: Bick, M.J, Chen, Z, Baker, D. Deposit date: 2018-05-29 Release date: 2018-12-19 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Programmable design of orthogonal protein heterodimers. Nature, 565, 2019
6D6X	HSP40 co-chaperone Sis1 J-domain Descriptor: Type II HSP40 co-chaperone Authors: Pinheiro, G.M.S, Amorim, G.C, Iqbal, A, Ramos, C.H.I, Almeida, F.C.L. Deposit date: 2018-04-23 Release date: 2019-05-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution NMR investigation on the structure and function of the isolated J-domain from Sis1: Evidence of transient inter-domain interactions in the full-length protein. Arch.Biochem.Biophys., 669, 2019
6DM9	DHD15_extended Descriptor: DHD15_extended_A, DHD15_extended_B, SULFATE ION Authors: Bick, M.J, Chen, Z, Baker, D. Deposit date: 2018-06-04 Release date: 2018-12-19 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Programmable design of orthogonal protein heterodimers. Nature, 565, 2019
6DR6	X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36 containing the F20Cha point mutation Descriptor: ORT-CYS-VAL-PHE-XXX-CYS-GLU-ASP-ORT-ALA-ILE-ILE-GLY-LEU-ORA-VAL Authors: Salveson, P.J, Nowick, J.S. Deposit date: 2018-06-11 Release date: 2018-10-17 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (2.608 Å) Cite: Repurposing Triphenylmethane Dyes to Bind to Trimers Derived from A beta. J. Am. Chem. Soc., 140, 2018
3ZU7	Crystal structure of a designed selected Ankyrin Repeat protein in complex with the MAP kinase ERK2 Descriptor: DESIGNED ANKYRIN REPEAT PROTEIN, MITOGEN-ACTIVATED PROTEIN KINASE 1 Authors: Kummer, L, Mittl, P.R, Pluckthun, A. Deposit date: 2011-07-16 Release date: 2012-06-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structural and Functional Analysis of Phosphorylation-Specific Binders of the Kinase Erk from Designed Ankyrin Repeat Protein Libraries. Proc.Natl.Acad.Sci.USA, 109, 2012
3ZUV	Crystal structure of a designed selected Ankyrin Repeat protein in complex with the phosphorylated MAP kinase ERK2 Descriptor: DESIGNED ANKYRIN REPEAT PROTEIN, MITOGEN-ACTIVATED PROTEIN KINASE 1, SULFATE ION Authors: Kummer, L, Mittl, P.R, Pluckthun, A. Deposit date: 2011-07-20 Release date: 2012-06-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.72 Å) Cite: Structural and Functional Analysis of Phosphorylation-Specific Binders of the Kinase Erk from Designed Ankyrin Repeat Protein Libraries. Proc.Natl.Acad.Sci.USA, 109, 2012
5I1N	Villin headpiece subdomain with a Gln26 to beta-3-homoglutamine substitution Descriptor: D-Villin headpiece subdomain, Villin-1 Authors: Kreitler, D.F, Mortenson, D.E, Gellman, S.H, Forest, K.T. Deposit date: 2016-02-05 Release date: 2016-05-25 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Effects of Single alpha-to-beta Residue Replacements on Structure and Stability in a Small Protein: Insights from Quasiracemic Crystallization. J.Am.Chem.Soc., 138, 2016
4LPT	Crystal structure of monomeric TENCON variant P54CR4-31 Descriptor: TENCON variant P54CR4-31 Authors: Teplyakov, A, Obmolova, G, Gilliland, G.L. Deposit date: 2013-07-16 Release date: 2014-01-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.544 Å) Cite: C-terminal beta-strand swapping in a consensus-derived fibronectin Type III scaffold. Proteins, 82, 2014
4LPX	Crystal structure of TENCON variant D4 Descriptor: TENCON variant D4 Authors: Teplyakov, A, Obmolova, G, Gilliland, G.L. Deposit date: 2013-07-16 Release date: 2014-01-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: C-terminal beta-strand swapping in a consensus-derived fibronectin Type III scaffold. Proteins, 82, 2014
5I1Z	Structure of nvPizza2-H16S58 Descriptor: SULFATE ION, nvPizza2-H16S58 Authors: Tame, J.R.H, Voet, A.R.D. Deposit date: 2016-02-07 Release date: 2017-02-08 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Broken Symmetry: Partial domain swapping in an artificial trimeric protein To Be Published

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