PDB: 92137 resultsInfo pagesStatus searchChemie searchBIRD

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2GLN	Crystal structure of Mycobacterium tuberculosis trHbN, GlnE11Ala mutant Descriptor: CYANIDE ION, Hemoglobin-like protein HbN, PHOSPHATE ION, ... Authors: Milani, M, Bolognesi, M. Deposit date: 2006-04-05 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues Biochemistry, 45, 2006
6LOL	The crystal structure of full length IpaH9.8 Descriptor: E3 ubiquitin-protein ligase ipaH9.8 Authors: Ye, Y, Huang, H. Deposit date: 2020-01-06 Release date: 2020-12-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Substrate-binding destabilizes the hydrophobic cluster to relieve the autoinhibition of bacterial ubiquitin ligase IpaH9.8. Commun Biol, 3, 2020
2FB9	Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes Descriptor: D-alanine:D-alanine ligase Authors: Lee, J.H, Na, Y, Eom, S.H. Deposit date: 2005-12-08 Release date: 2006-08-29 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: A basis for the substrate-induced conformational changes Proteins, 64, 2006
1FZF	CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH THE PEPTIDE LIGAND GLY-HIS-ARG-PRO-AMIDE Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, FIBRINOGEN Authors: Everse, S.J, Spraggon, G, Veerapandian, L, Doolittle, R.F. Deposit date: 1998-12-28 Release date: 1999-06-08 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Conformational changes in fragments D and double-D from human fibrin(ogen) upon binding the peptide ligand Gly-His-Arg-Pro-amide. Biochemistry, 38, 1999
1UMH	Structural basis of sugar-recognizing ubiquitin ligase Descriptor: F-box only protein 2, NICKEL (II) ION Authors: Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-10-01 Release date: 2004-04-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis of sugar-recognizing ubiquitin ligase NAT.STRUCT.MOL.BIOL., 11, 2004
2GKM	Crystal structure of Mycobacterium tuberculosis trHbN TyrB10Phe mutant Descriptor: CYANIDE ION, Hemoglobin-like protein HbN, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Milani, M, Bolognesi, M. Deposit date: 2006-04-03 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.731 Å) Cite: Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues Biochemistry, 45, 2006
3SQ6	Crystal Structures of the Ligand Binding Domain of a Pentameric Alpha7 Nicotinic Receptor Chimera with its Agonist Epibatidine Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, EPIBATIDINE, ... Authors: Li, S.-X, Huang, S, Bren, N, Noridomi, K, Dellisanti, C, Sine, S, Chen, L. Deposit date: 2011-07-05 Release date: 2011-09-28 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Ligand-binding domain of an alpha 7-nicotinic receptor chimera and its complex with agonist. Nat.Neurosci., 14, 2011
3D32	Complex of GABA(A) receptor-associated protein (GABARAP) with a synthetic peptide Descriptor: CHLORIDE ION, Gamma-aminobutyric acid receptor-associated protein, K1 peptide, ... Authors: Weiergraeber, O.H, Stangler, T, Willbold, D. Deposit date: 2008-05-09 Release date: 2008-08-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Ligand Binding Mode of GABA(A) Receptor-Associated Protein. J.Mol.Biol., 381, 2008
3CPO	Crystal structure of ketosteroid isomerase D40N with bound 2-fluorophenol Descriptor: 2-fluorophenol, Delta(5)-3-ketosteroid isomerase Authors: Caaveiro, J.M.M, Pybus, B, Ringe, D, Petsko, G. Deposit date: 2008-03-31 Release date: 2008-09-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole J.Am.Chem.Soc., 130, 2008
2GL3	Crystal structure of Mycobacterium tuberculosis trHbN, TyrB10Phe GlnE11Val mutant Descriptor: CYANIDE ION, Hemoglobin-like protein HbN, PHOSPHATE ION, ... Authors: Milani, M, Bolognesi, M. Deposit date: 2006-04-04 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues Biochemistry, 45, 2006
2GKN	Crystal structure of Mycobacterium tuberculosis trHbN, GlnE11Val mutant Descriptor: CYANIDE ION, Hemoglobin-like protein HbN, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Milani, M, Bolognesi, M. Deposit date: 2006-04-03 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues Biochemistry, 45, 2006
1IO6	GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (GRB2) C-TERMINAL SH3 DOMAIN COMPLEXED WITH A LIGAND PEPTIDE (NMR, MINIMIZED MEAN STRUCTURE) Descriptor: A LIGAND PEPTIDE, GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 Authors: Kawasaki, M, Ogura, K, Hatanaka, H, Inagaki, F. Deposit date: 2001-01-25 Release date: 2001-02-14 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution Structure of the C-Terminal SH3 Domain of Grb2 Complexed with a Ligand Peptide: A Ligand Exchange Model of the SH3 Domain To be Published
2MX6	Complex structure of Dvl PDZ domain with ligand Descriptor: (PHQ)WV peptide, Segment polarity protein dishevelled homolog DVL-1 Authors: Zhang, X, Zheng, J.J. Deposit date: 2014-12-15 Release date: 2015-12-30 Method: SOLUTION NMR Cite: Protein-ligand interaction decoded by NMR chemical shift analysis To be Published
2DK3	Solution structure of Mib-herc2 domain in HECT domain containing protein 1 Descriptor: E3 ubiquitin-protein ligase HECTD1 Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-06 Release date: 2006-10-06 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of Mib-herc2 domain in HECT domain containing protein 1 To be Published
3KFD	Ternary complex of TGF-b1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily Descriptor: TGF-beta receptor type-1, TGF-beta receptor type-2, Transforming growth factor beta-1 Authors: Radaev, S, Sun, P.D. Deposit date: 2009-10-27 Release date: 2010-03-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.995 Å) Cite: Ternary complex of transforming growth factor-beta1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily. J.Biol.Chem., 285, 2010
5E6R	Structures of leukocyte integrin aLb2: The aI domain, the headpiece, and the pocket for the internal ligand Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-L, ... Authors: Sen, M, Springer, T.A. Deposit date: 2015-10-10 Release date: 2016-03-02 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.901 Å) Cite: Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA, 113, 2016
3KO4	Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Plasmodium falciparum in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-tyrosyl-tRNA(Tyr) deacylase Authors: Manickam, Y, Bhatt, T.K, Sharma, A. Deposit date: 2009-11-13 Release date: 2009-12-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase J.Biol.Chem., 285, 2010
5HGJ	Structure of integrin alpha1beta1 and alpha2beta1 I-domains explain differential calcium-mediated ligand recognition Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ... Authors: Brown, K.L, Banerjee, S, Feigley, A, Abe, H, Blackwell, T, Zent, R, Pozzi, A, Hudson, B.H. Deposit date: 2016-01-08 Release date: 2017-04-12 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.399 Å) Cite: Salt-bridge modulates differential calcium-mediated ligand binding to integrin alpha 1- and alpha 2-I domains. Sci Rep, 8, 2018
3KO3	D-tyrosyl-tRNA(Tyr) deacylase from Plasmodium falciparum incomplex with ADP, obtained through soaking native enzyme crystal with the ATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-tyrosyl-tRNA(Tyr) deacylase Authors: Manickam, Y, Bhatt, T.K, Sharma, A. Deposit date: 2009-11-13 Release date: 2009-12-08 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase J.Biol.Chem., 285, 2010
2EJC	Crystal Structure Of Pantoate--Beta-Alanine Ligase (panC) From Thermotoga maritima Descriptor: ACETATE ION, Pantoate--beta-alanine ligase, ZINC ION Authors: Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-16 Release date: 2008-03-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure Of Pantoate--Beta-Alanine Ligase (panC) From Thermotoga maritima To be Published
2A3B	Crystal structure of Aspergillus fumigatus chitinase B1 in complex with caffeine Descriptor: CAFFEINE, SULFATE ION, chitinase Authors: Rao, F.V, Andersen, O.A, Vora, K.A, DeMartino, J.A, van Aalten, D.M.F. Deposit date: 2005-06-24 Release date: 2005-09-27 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Methylxanthine drugs are chitinase inhibitors: investigation of inhibition and binding modes. Chem.Biol., 12, 2005
5E6U	Structures of leukocyte integrin aLb2: The aI domain, the headpiece, and the pocket for the internal ligand Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Sen, M, Springer, T.A. Deposit date: 2015-10-10 Release date: 2016-04-06 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA, 113, 2016
5E6S	Structures of leukocyte integrin aLB2: The aI domain, the headpiece, and the pocket for the internal ligand Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-L, ... Authors: Springer, T.A, Sen, M. Deposit date: 2015-10-10 Release date: 2016-03-02 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Leukocyte integrin alpha L beta 2 headpiece structures: The alpha I domain, the pocket for the internal ligand, and concerted movements of its loops. Proc.Natl.Acad.Sci.USA, 113, 2016
5WZX	Structural basis for a pentacyclic oleanane-type triterpenoid as a ligand of FXR Descriptor: (4aR,6aR,6aS,6bS,8aS,9R,12aR,14bR)-2,2,6a,6b,9,12a-hexamethyl-10-oxidanylidene-1,3,4,5,6,6a,7,8,8a,9,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid, (R,R)-2,3-BUTANEDIOL, Bile acid receptor, ... Authors: Lu, Y, Li, Y. Deposit date: 2017-01-19 Release date: 2018-01-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Identification of an Oleanane-Type Triterpene Hedragonic Acid as a Novel Farnesoid X Receptor Ligand with Liver Protective Effects and Anti-inflammatory Activity Mol. Pharmacol., 93, 2018
3LOA	Crystal Structure Analysis of the RNA construct with two adjacent ligand binding sites of helix h44 in 16S ribosomal RNA Descriptor: 5'-R(*CP*CP*GP*CP*GP*CP*CP*CP*GP*(5BU)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*CP*G)-3', 5'-R(*GP*GP*GP*(5BU)P*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*UP*AP*AP*CP*GP*CP*GP*GP*C)-3', MAGNESIUM ION, ... Authors: Dibrov, S. Deposit date: 2010-02-03 Release date: 2010-08-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.299 Å) Cite: A model for the study of ligand binding to the ribosomal RNA helix h44. Nucleic Acids Res., 38, 2010

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