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2QIZ
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BU of 2qiz by Molmil
Structure of the yeast U-box-containing ubiquitin ligase Ufd2p
Descriptor: POTASSIUM ION, Ubiquitin conjugation factor E4
Authors:Tu, D, Brunger, A.T.
Deposit date:2007-07-06
Release date:2007-09-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Inaugural Article: Structure and function of the yeast U-box-containing ubiquitin ligase Ufd2p.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3BAB
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BU of 3bab by Molmil
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
Descriptor: 7-amino-2-tert-butyl-4-(4-pyrimidin-2-ylpiperazin-1-yl)pyrido[2,3-d]pyrimidine-6-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ...
Authors:Pinko, C.
Deposit date:2007-11-07
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
To be Published
3BAA
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BU of 3baa by Molmil
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
Descriptor: 7-amino-2-tert-butyl-4-{[2-(1H-imidazol-4-yl)ethyl]amino}pyrido[2,3-d]pyrimidine-6-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ...
Authors:Pinko, C.
Deposit date:2007-11-07
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
To be Published
4FNA
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BU of 4fna by Molmil
Structure of unliganded FhuD2 from Staphylococcus Aureus
Descriptor: Ferric hydroxamate receptor 2, SULFATE ION
Authors:Shilton, B.H, Heinrichs, D.E.
Deposit date:2012-06-19
Release date:2013-06-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal and solution structure analysis of FhuD2 from Staphylococcus aureus in multiple unliganded conformations and bound to ferrioxamine-B.
Biochemistry, 53, 2014
5MH1
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BU of 5mh1 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas
Descriptor: GLYCEROL, MAGNESIUM ION, Natterin-3, ...
Authors:Weinert, T, Warkentin, E, Pang, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
3UIP
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BU of 3uip by Molmil
Complex between human RanGAP1-SUMO1, UBC9 and the IR1 domain from RanBP2 containing IR2 Motif II
Descriptor: E3 SUMO-protein ligase RanBP2, Ran GTPase-activating protein 1, SUMO-conjugating enzyme UBC9, ...
Authors:Gareau, J.R, Reverter, D, Lima, C.D.
Deposit date:2011-11-05
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.293 Å)
Cite:Determinants of small ubiquitin-like modifier 1 (SUMO1) protein specificity, E3 ligase, and SUMO-RanGAP1 binding activities of nucleoporin RanBP2.
J.Biol.Chem., 287, 2012
5MH3
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BU of 5mh3 by Molmil
Crystal structure of a DM9 domain containing protein from Crassostrea gigas with K43A mutation
Descriptor: GLYCEROL, Natterin-3
Authors:Weinert, T, Warkentin, E, Pang, G.
Deposit date:2016-11-22
Release date:2017-12-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum.
Front Immunol, 8, 2017
5W4W
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BU of 5w4w by Molmil
Identification and Profiling of a Selective and Brain Penetrant Radioligand for In Vivo Target Occupancy Measurement of Casein Kinase 1 (CK1) Inhibitors
Descriptor: 4-[3-(4-fluorophenyl)-1-methyl-1H-pyrazol-4-yl]-6-methyl-6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-5-one, Casein kinase I isoform delta, SULFATE ION
Authors:Liu, S.
Deposit date:2017-06-13
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Identification and Profiling of a Selective and Brain Penetrant Radioligand for in Vivo Target Occupancy Measurement of Casein Kinase 1 (CK1) Inhibitors.
ACS Chem Neurosci, 8, 2017
2LVP
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BU of 2lvp by Molmil
gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin
Authors:Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
Deposit date:2012-07-09
Release date:2012-11-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
4CHW
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BU of 4chw by Molmil
The electron crystallography structure of the cAMP-free potassium channel MloK1
Descriptor: CYCLIC NUCLEOTIDE-GATED POTASSIUM CHANNEL MLL3241, POTASSIUM ION
Authors:Kowal, J, Chami, M, Baumgartner, P, Arheit, M, Chiu, P.L, Rangl, M, Scheuring, S, Schroeder, G.F, Nimigean, C.M, Stahlberg, H.
Deposit date:2013-12-04
Release date:2014-01-15
Last modified:2024-05-08
Method:ELECTRON CRYSTALLOGRAPHY (7 Å)
Cite:Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1.
Nat Commun, 5, 2014
3BA8
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BU of 3ba8 by Molmil
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
Descriptor: 2-amino-7-fluoro-5-oxo-5H-chromeno[2,3-b]pyridine-3-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ...
Authors:Pinko, C.
Deposit date:2007-11-07
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
To be Published
3UIO
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BU of 3uio by Molmil
Complex between human RanGAP1-SUMO2, UBC9 and the IR1 domain from RanBP2 containing IR2 Motif II
Descriptor: E3 SUMO-protein ligase RanBP2, Ran GTPase-activating protein 1, SUMO-conjugating enzyme UBC9, ...
Authors:Gareau, J.R, Reverter, D, Lima, C.D.
Deposit date:2011-11-05
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Determinants of small ubiquitin-like modifier 1 (SUMO1) protein specificity, E3 ligase, and SUMO-RanGAP1 binding activities of nucleoporin RanBP2.
J.Biol.Chem., 287, 2012
4JPF
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BU of 4jpf by Molmil
Structure of wild type Pseudomonas aeruginosa FabF (KASII) in Complex with ligand
Descriptor: 3-(benzoylamino)-2-hydroxybenzoic acid, 3-oxoacyl-[acyl-carrier-protein] synthase 2, MAGNESIUM ION, ...
Authors:Baum, B, Brenk, R, Jaenicke, E.
Deposit date:2013-03-19
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structures of Pseudomonas aeruginosa beta-ketoacyl-(acyl-carrier-protein) synthase II (FabF) and a C164Q mutant provide templates for antibacterial drug discovery and identify a buried potassium ion and a ligand-binding site that is an artefact of the crystal form.
Acta Crystallogr F Struct Biol Commun, 71, 2015
2LVQ
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BU of 2lvq by Molmil
gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin
Descriptor: E3 ubiquitin-protein ligase AMFR, Ubiquitin
Authors:Liu, S, Chen, Y, Huang, T, Tarasov, S.G, King, A, Li, J, Weissman, A.M, Byrd, R.A, Das, R.
Deposit date:2012-07-09
Release date:2012-11-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
Structure, 20, 2012
2RNO
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BU of 2rno by Molmil
Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa
Descriptor: Putative DNA-binding protein
Authors:Suzuki, R, Shindo, H, Tase, A, Yamazaki, T.
Deposit date:2008-01-30
Release date:2008-12-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.
Proteins, 75, 2009
3BA9
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BU of 3ba9 by Molmil
Structural Basis for Inhbition of NAD-Dependent Ligase
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, GLYCEROL, ...
Authors:Pinko, C.
Deposit date:2007-11-07
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Inhbition of NAD-Dependent Ligase
To be Published
7BGA
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BU of 7bga by Molmil
Mutant F105A of recombinant beta-lactoglobulin in complex with endogenous ligand
Descriptor: Beta-lactoglobulin, LAURIC ACID, SULFATE ION
Authors:Loch, J.I, Lazinska, I, Lewinski, K.
Deposit date:2021-01-06
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.
Acta Biochim.Pol., 68, 2021
3Q7E
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BU of 3q7e by Molmil
Crystal Structure of rat Protein Arginine Methyltransferase 1 (PRMT1)M48L mutant
Descriptor: MAGNESIUM ION, Protein arginine N-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Johnson, S.J, Porter, P.J, Hevel, J.M.
Deposit date:2011-01-04
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Investigation of the molecular origins of protein-arginine methyltransferase I (PRMT1) product specificity reveals a role for two conserved methionine residues.
J.Biol.Chem., 286, 2011
7BGZ
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BU of 7bgz by Molmil
Mutant L39K of recombinant beta-lactoglobulin in complex with endogenous ligand
Descriptor: 1,2-ETHANEDIOL, Beta-lactoglobulin, DECANOIC ACID
Authors:Loch, J.I, Siuda, M.K, Lewinski, K.
Deposit date:2021-01-09
Release date:2021-01-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.
Acta Biochim.Pol., 68, 2021
6M2T
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BU of 6m2t by Molmil
The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-methyl-thiazole-5 carboxylate-AMP
Descriptor: 2-methyl-1,3-thiazole-5-carboxylic acid, ADENOSINE MONOPHOSPHATE, Benzoate-coenzyme A ligase
Authors:Li, T.L, Adhikari, K.
Deposit date:2020-02-29
Release date:2021-03-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-methyl-thiazole-5 carboxylate-AMP
To Be Published
2JQZ
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BU of 2jqz by Molmil
Solution Structure of the C2 domain of human Smurf2
Descriptor: E3 ubiquitin-protein ligase SMURF2
Authors:Wiesner, S, Ogunjimi, A.A, Wang, H, Rotin, D, Sicheri, F, Wrana, J.L, Forman-Kay, J.D.
Deposit date:2007-06-15
Release date:2007-09-11
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Autoinhibition of the HECT-Type Ubiquitin Ligase Smurf2 through Its C2 Domain
Cell(Cambridge,Mass.), 130, 2007
2RJ2
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BU of 2rj2 by Molmil
Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
Descriptor: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION
Authors:Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
3B7Y
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BU of 3b7y by Molmil
Crystal structure of the C2 Domain of the E3 Ubiquitin-Protein Ligase NEDD4
Descriptor: CALCIUM ION, E3 ubiquitin-protein ligase NEDD4
Authors:Walker, J.R, Ruzanov, M, Butler-Cole, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-10-31
Release date:2007-11-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:C2 Domain of the Human E3 Ubiquitin-Protein Ligase NEDD4.
To be Published
6EZG
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BU of 6ezg by Molmil
Torpedo californica AChE in complex with indolic multi-target directed ligand
Descriptor: 1-(7-chloranyl-4-methoxy-1~{H}-indol-5-yl)-3-[1-(phenylmethyl)piperidin-4-yl]propan-1-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase, ...
Authors:Santoni, G, Lalut, J, Karila, D, Lecoutey, C, Davis, A, Nachon, F, Sillman, I, Sussman, J, Weik, M, Maurice, T, Dallemagne, P, Rochais, C.
Deposit date:2017-11-15
Release date:2018-11-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel multitarget-directed ligands targeting acetylcholinesterase and sigma1receptors as lead compounds for treatment of Alzheimer's disease: Synthesis, evaluation, and structural characterization of their complexes with acetylcholinesterase.
Eur J Med Chem, 162, 2018
7JQ9
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BU of 7jq9 by Molmil
Cryo-EM structure of human HUWE1
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Hunkeler, M, Fischer, E.S.
Deposit date:2020-08-10
Release date:2021-07-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition.
Mol.Cell, 81, 2021

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