PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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4EYA	Crystal Structure of a Plectonemic RNA Supercoil Descriptor: GLYCEROL, N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), ... Authors: Stagno, J.R, Ji, X. Deposit date: 2012-05-01 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of a plectonemic RNA supercoil. Nat Commun, 3, 2012
3OTD	Crystal structure of human tRNAHis guanylyltransferase (Thg1)- NaI derivative Descriptor: IODIDE ION, tRNA(His) guanylyltransferase Authors: Hyde, S.J, Eckenroth, B.E, Doublie, S. Deposit date: 2010-09-11 Release date: 2010-11-17 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.28 Å) Cite: tRNAHis guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases. Proc.Natl.Acad.Sci.USA, 107, 2010
4GL2	Structural Basis for dsRNA duplex backbone recognition by MDA5 Descriptor: Interferon-induced helicase C domain-containing protein 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3'), ... Authors: Wu, B, Hur, S. Deposit date: 2012-08-13 Release date: 2013-01-09 Last modified: 2013-02-06 Method: X-RAY DIFFRACTION (3.557 Å) Cite: Structural Basis for dsRNA Recognition, Filament Formation, and Antiviral Signal Activation by MDA5. Cell(Cambridge,Mass.), 152, 2013
1FT8	CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE MRNA EXPORT FACTOR TAP Descriptor: TIP ASSOCIATING PROTEIN Authors: Liker, E, Fernandez, E, Izaurralde, E, Conti, E. Deposit date: 2000-09-12 Release date: 2000-12-11 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.15 Å) Cite: The structure of the mRNA export factor TAP reveals a cis arrangement of a non-canonical RNP domain and an LRR domain. EMBO J., 19, 2000
4NRU	Murine Norovirus RNA-dependent-RNA-polymerase in complex with Compound 6, a suramin derivative Descriptor: 4-({4-methyl-3-[(3-nitrobenzoyl)amino]benzoyl}amino)naphthalene-1,5-disulfonic acid, MAGNESIUM ION, RNA dependent RNA polymerase Authors: Milani, M, Croci, R, Pezzullo, M, Tarantino, D, Mastrangelo, E, Bolognesi, M. Deposit date: 2013-11-27 Release date: 2014-10-15 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural bases of norovirus RNA dependent RNA polymerase inhibition by novel suramin-related compounds. Plos One, 9, 2014
6W64	Cryo-EM structure of Cas12i-crRNA-dsDNA complex in I1 state Descriptor: Cas12i, DNA (25-MER), crRNA Authors: Chang, L, Li, Z, Zhang, H. Deposit date: 2020-03-16 Release date: 2020-09-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Mechanisms for target recognition and cleavage by the Cas12i RNA-guided endonuclease. Nat.Struct.Mol.Biol., 27, 2020
6WLH	RNA complex of WT1 zinc finger transcription factor Descriptor: RNA (29-MER), Wilms tumor protein, ZINC ION Authors: Wright, P.E, Dyson, H.J. Deposit date: 2020-04-20 Release date: 2021-03-03 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: RNA Binding by the KTS Splice Variants of Wilms' Tumor Suppressor Protein WT1. Biochemistry, 59, 2020
4PDB	CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER Descriptor: 30S ribosomal protein S8, SELEX RNA aptamer Authors: Davlieva, M, Shamoo, Y, Nikonowicz, E.P. Deposit date: 2014-04-17 Release date: 2014-09-03 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis. Nucleic Acids Res., 42, 2014
6R9J	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with A7 RNA Descriptor: A7 RNA, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 Authors: Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. Deposit date: 2019-04-03 Release date: 2019-05-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.326 Å) Cite: The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
6R9P	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAUUAA RNA Descriptor: AAUUAA RNA, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 Authors: Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. Deposit date: 2019-04-03 Release date: 2019-05-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.98 Å) Cite: The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
6R9O	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGA RNA Descriptor: AAGGA RNA, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 Authors: Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. Deposit date: 2019-04-03 Release date: 2019-05-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.319 Å) Cite: The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
2XZ2	Crystal structure of CstF-50 homodimerization domain Descriptor: CSTF-50, ISOFORM B, DI(HYDROXYETHYL)ETHER, ... Authors: Moreno-Morcillo, M, Fribourg, S. Deposit date: 2010-11-22 Release date: 2011-01-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Hexameric Architecture of Cstf Supported by Cstf- 50 Homodimerization Domain Structure. RNA, 17, 2011
6R9M	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGAA RNA Descriptor: AAGGAA RNA, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 Authors: Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. Deposit date: 2019-04-03 Release date: 2019-05-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.329 Å) Cite: The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
3N2Y	Crystal structure of tyrosyl-tRNA synthetase complexed with p-(2-tetrazolyl)-phenylalanine Descriptor: 4-(2H-tetrazol-2-yl)-L-phenylalanine, Tyrosyl-tRNA synthetase Authors: Wu, M, Li, J, Zang, J. Deposit date: 2010-05-19 Release date: 2010-11-03 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.49 Å) Cite: A biosynthetic route to photoclick chemistry on proteins J.Am.Chem.Soc., 132, 2010
1Y39	Co-evolution of protein and RNA structures within a highly conserved ribosomal domain Descriptor: 50S ribosomal protein L11, 58 Nucleotide Ribosomal 23S RNA Domain, COBALT (III) ION, ... Authors: Dunstan, M.S, GuhaThakurta, D, Draper, D.E, Conn, G.L. Deposit date: 2004-11-24 Release date: 2005-03-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Coevolution of Protein and RNA Structures within a Highly Conserved Ribosomal Domain Chem.Biol., 12, 2005
5VT0	Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzyme Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Chen, J, Darst, S.A. Deposit date: 2017-05-15 Release date: 2017-11-01 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.78 Å) Cite: 6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase. Mol. Cell, 68, 2017
4H5O	Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Pentamer Bound to Single-stranded RNA Descriptor: 35-mer poly(U) RNA, Nucleocapsid protein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2012-09-18 Release date: 2012-11-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012
4H5P	Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Tetramer Bound to Single-stranded RNA Descriptor: 28-mer poly(U) RNA, Nucleocapsid protein Authors: Raymond, D.D, Smith, J.L. Deposit date: 2012-09-18 Release date: 2012-11-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012
7K9D	Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (crystal form I) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, COBALT HEXAMMINE(III), ... Authors: Yang, Y, Breaker, R.R. Deposit date: 2020-09-29 Release date: 2021-03-03 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.098 Å) Cite: Structure of a bacterial OapB protein with its OLE RNA target gives insights into the architecture of the OLE ribonucleoprotein complex. Proc.Natl.Acad.Sci.USA, 118, 2021
7K9E	Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (crystal form II) Descriptor: OLE* RNA, OLE-associated protein B Authors: Yang, Y, Breaker, R.R. Deposit date: 2020-09-29 Release date: 2021-03-03 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of a bacterial OapB protein with its OLE RNA target gives insights into the architecture of the OLE ribonucleoprotein complex. Proc.Natl.Acad.Sci.USA, 118, 2021
4MJ7	Crystal structure of the PIN domain of Saccharomyces cerevisiae Utp23 Descriptor: ZINC ION, rRNA-processing protein UTP23 Authors: Lu, J, Ye, K. Deposit date: 2013-09-03 Release date: 2013-11-06 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Structural and functional analysis of Utp23, a yeast ribosome synthesis factor with degenerate PIN domain Rna, 19, 2013
1MWH	REOVIRUS POLYMERASE LAMBDA3 BOUND TO MRNA CAP ANALOG Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, MANGANESE (II) ION, MINOR CORE PROTEIN LAMBDA 3 Authors: Tao, Y, Farsetta, D.L, Nibert, M.L, Harrison, S.C. Deposit date: 2002-09-29 Release date: 2002-12-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: RNA Synthesis in a Cage-Structural Studies of Reovirus Polymerase lambda3 Cell(Cambridge,Mass.), 111, 2002
3SN2	Crystal structure analysis of iron regulatory protein 1 in complex with transferrin receptor IRE B RNA Descriptor: Cytoplasmic aconitate hydratase, transferrin receptor iron regulatory element B RNA Authors: Volz, K, Selezneva, A.I, Walden, W.E. Deposit date: 2011-06-28 Release date: 2011-11-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1. Febs Lett., 586, 2012
1MP1	Solution structure of the PWI motif from SRm160 Descriptor: Ser/Arg-related nuclear matrix protein Authors: Szymczyna, B.R, Bowman, J, McCracken, S, Pineda-Lucena, A, Lu, Y, Cox, B, Lambermon, M, Graveley, B.R, Arrowsmith, C.H, Blencowe, B.J. Deposit date: 2002-09-11 Release date: 2003-09-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing. Genes Dev., 17, 2003
4N0L	Methanopyrus kandleri Csm3 crystal structure Descriptor: Predicted component of a thermophile-specific DNA repair system, contains a RAMP domain, ZINC ION Authors: Hrle, A, Su, A.A, Ebert, J, Benda, C, Conti, E, Randau, L. Deposit date: 2013-10-02 Release date: 2013-11-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Structure and RNA-binding properties of the Type III-A CRISPR-associated protein Csm3. Rna Biol., 10, 2013

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