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8VIW
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BU of 8viw by Molmil
Cryo-EM structure of heparosan synthase 2 from Pasteurella multocida with polysaccharide in the GlcNAc-T active site
Descriptor: Heparosan synthase B, MANGANESE (II) ION, URIDINE-5'-DIPHOSPHATE, ...
Authors:Krahn, J.M, Pedersen, L.C, Liu, J, Stancanelli, E, Borgnia, M, Vivarette, E.
Deposit date:2024-01-05
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural and Functional Analysis of Heparosan Synthase 2 from Pasteurella multocida to Improve the Synthesis of Heparin
Acs Catalysis, 14, 2024
6Q9W
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BU of 6q9w by Molmil
X-ray structure of compound 15 bound to HdmX: Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes
Descriptor: (4~{S})-4-(4-chlorophenyl)-5-[(1~{S})-1-(3-chlorophenyl)ethyl]-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4~{H}-pyrrolo[3,4-d]imidazol-6-one, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Protein Mdm4, ...
Authors:Kallen, J.
Deposit date:2018-12-18
Release date:2019-05-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes.
Chemmedchem, 14, 2019
7PCC
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BU of 7pcc by Molmil
BurG in complex with Mg2+ and NAD+ (holo): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: GLYCEROL, Ketol-acid reductoisomerase, MAGNESIUM ION, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PZA
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BU of 7pza by Molmil
Structure of the Clr-cAMP-DNA complex
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*CP*TP*AP*GP*GP*TP*AP*AP*CP*AP*TP*TP*AP*CP*TP*CP*GP)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*TP*AP*AP*TP*GP*TP*TP*AP*C)-3'), ...
Authors:Werel, L, Essen, L.-O.
Deposit date:2021-10-11
Release date:2022-11-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural Basis of Dual Specificity of Sinorhizobium meliloti Clr, a cAMP and cGMP Receptor Protein.
Mbio, 14, 2023
7PCG
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BU of 7pcg by Molmil
BurG (holo) in complex with cyclopropane-1,1-dicarboxylate (7): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: GLYCEROL, Ketol-acid reductoisomerase, MAGNESIUM ION, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCE
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BU of 7pce by Molmil
BurG (apo): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Ketol-acid reductoisomerase, PHOSPHATE ION
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCO
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BU of 7pco by Molmil
BurG E232Q mutant (holo) in complex with 2R,3R-2,3-dihydroxy-6-methyl-heptanoate (12): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: (2R,3R)-6-methyl-2,3-bis(oxidanyl)heptanoic acid, GLYCEROL, Ketol-acid reductoisomerase, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCT
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BU of 7pct by Molmil
BurG E232Q mutant (holo) in complex with enol-oxalacetate (15): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: (~{Z})-2-oxidanylbut-2-enedioic acid, GLYCEROL, Ketol-acid reductoisomerase, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-04
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCM
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BU of 7pcm by Molmil
BurG (holo) in complex with (Z)-2,3-dihydroxy-6-methyl-hept-2-enoate (13): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: (Z)-6-methyl-2,3-bis(oxidanyl)hept-2-enoic acid, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Ketol-acid reductoisomerase, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCI
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BU of 7pci by Molmil
BurG (holo) in complex with hydroxypyruvate-enol (8): Biosynthesis of cyclopropanol rings in bacterial toxins
Descriptor: (Z)-2,3-bis(oxidanyl)prop-2-enoic acid, IMIDAZOLE, Ketol-acid reductoisomerase, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCL
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BU of 7pcl by Molmil
BurG (holo) in complex with 2-hydroxy-2-(hydroxy(isopropyl)amino)acetate (11): Biosynthesis of cyclopropanolrings in bacterial toxins
Descriptor: (2S)-2-oxidanyl-2-[oxidanyl(propan-2-yl)amino]ethanoic acid, Ketol-acid reductoisomerase, MAGNESIUM ION, ...
Authors:Trottmann, F, Ishida, K, Ishida, M, Kries, H, Groll, M, Hertweck, C.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead.
Nat.Chem., 14, 2022
7PCV
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BU of 7pcv by Molmil
Crystal structure of RBM5 RRM1-zinc finger
Descriptor: RNA-binding protein 5, ZINC ION
Authors:Soni, K, Jagtap, P.K.A, Sattler, M.
Deposit date:2021-08-04
Release date:2022-08-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural basis for specific RNA recognition by the alternative splicing factor RBM5.
Nat Commun, 14, 2023
7SJQ
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BU of 7sjq by Molmil
Ex silico engineering of cystine-dense peptides yielding a potent bispecific T-cell engager
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cystine-dense peptide, GLYCEROL, ...
Authors:Rupert, P.B, Strong, R.
Deposit date:2021-10-18
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ex silico engineering of cystine-dense peptides yielding a potent bispecific T cell engager.
Sci Transl Med, 14, 2022
6Q9H
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BU of 6q9h by Molmil
HDM2 (17-111, WILD TYPE) COMPLEXED WITH COMPOUND 11 AT 2.0A; Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes
Descriptor: (4~{S})-5-(3-chloranyl-2-fluoranyl-phenyl)-4-(4-chloranyl-2-methyl-phenyl)-3-propan-2-yl-1,4-dihydropyrrolo[3,4-c]pyrazol-6-one, E3 ubiquitin-protein ligase Mdm2
Authors:Kallen, J.
Deposit date:2018-12-18
Release date:2019-05-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes.
Chemmedchem, 14, 2019
8U7W
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BU of 8u7w by Molmil
Crystal structure of non-receptor protein tyrosine phosphatase SHP2 in complex with inhibitor compound 7
Descriptor: 1-{6-[(2,3-dichlorophenyl)sulfanyl]pyrido[2,3-b]pyrazin-2-yl}-4-methylpiperidin-4-amine, Tyrosine-protein phosphatase non-receptor type 11
Authors:Mou, T.C.
Deposit date:2023-09-15
Release date:2024-01-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of 5-Azaquinoxaline Derivatives as Potent and Orally Bioavailable Allosteric SHP2 Inhibitors.
Acs Med.Chem.Lett., 14, 2023
3W01
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BU of 3w01 by Molmil
Crystal structure of PcrB complexed with PEG from Staphylococcus aureus subsp. aureus Mu3
Descriptor: Heptaprenylglyceryl phosphate synthase, TRIETHYLENE GLYCOL
Authors:Ren, F, Feng, X, Ko, T.P, Huang, C.H, Hu, Y, Chan, H.C, Liu, Y.L, Wang, K, Chen, C.C, Pang, X, He, M, Li, Y, Oldfield, E, Guo, R.T.
Deposit date:2012-10-17
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Insights into TIM-barrel prenyl transferase mechanisms: crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus
Chembiochem, 14, 2013
7RWF
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BU of 7rwf by Molmil
Crystal structure of CDK2 in complex with TW8672
Descriptor: 1,2-ETHANEDIOL, 2-{[2-(1H-indol-3-yl)ethyl]amino}-5-nitrobenzoic acid, Cyclin-dependent kinase 2
Authors:Sun, L, Schonbrunn, E.
Deposit date:2021-08-19
Release date:2022-08-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Development of allosteric and selective CDK2 inhibitors for contraception with negative cooperativity to cyclin binding.
Nat Commun, 14, 2023
8TYO
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BU of 8tyo by Molmil
Structural and biochemical rationale for Beta variant protein booster vaccine broad cross-neutralization of SARS-CoV-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Bruch, E.M, Rak, A.
Deposit date:2023-08-25
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural and biochemical rationale for Beta variant protein booster vaccine broad cross-neutralization of SARS-CoV-2.
Sci Rep, 14, 2024
7Q4A
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BU of 7q4a by Molmil
Toxoplasma gondii PRP4K kinase domain (L715F) bound to altiratinib
Descriptor: Altiratinib, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Swale, C, Bellini, V, Bowler, M.
Deposit date:2021-10-29
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Altiratinib blocks Toxoplasma gondii and Plasmodium falciparum development by selectively targeting a spliceosome kinase.
Sci Transl Med, 14, 2022
8WQR
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BU of 8wqr by Molmil
Structure of the DDB1-AMBRA1 E3 ligase receptor complex linked to cell cycle regulation
Descriptor: Activating molecule in BECN1-regulated autophagy protein 1, DNA damage-binding protein 1
Authors:Liu, M, Wang, Y, Su, M.Y, Stjepanovic, G.
Deposit date:2023-10-12
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structure of the DDB1-AMBRA1 E3 ligase receptor complex linked to cell cycle regulation.
Nat Commun, 14, 2023
8XCX
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BU of 8xcx by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XD4
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BU of 8xd4 by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XCR
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BU of 8xcr by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the initial stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XCV
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BU of 8xcv by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction
Descriptor: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XCW
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BU of 8xcw by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction
Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024

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