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400D	THE INTRINSIC STRUCTURE AND STABILITY OF OUT-OF-ALTERNATION BASE PAIRS IN Z-DNA Descriptor: DNA (5'-D(*(5CM)P*GP*GP*CP*(5CM)P*G)-3') Authors: Eichman, B.F, Basham, B, Schroth, G.P, Ho, P.S. Deposit date: 1998-05-28 Release date: 1998-07-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Res., 27, 1999
6N4G	Crystal structure of a tetrameric DNA fold-back quadruplex Descriptor: BARIUM ION, DNA (5'-D(*CP*GP*TP*TP*AP*GP*GP*CP*G)-3') Authors: Chu, B, Paukstelis, P.J. Deposit date: 2018-11-19 Release date: 2018-12-05 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex. J. Am. Chem. Soc., 140, 2018
3QK4	Crystal structure of d(CGCGGGTACCCGCG)2 as A-DNA duplex Descriptor: DNA (5'-D(*CP*GP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*CP*G)-3') Authors: Venkadesh, S, Mandal, P.K, Gautham, N. Deposit date: 2011-01-31 Release date: 2011-03-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)(2) Biochem.Biophys.Res.Commun., 407, 2011
7DTA	Solution structure of the C-clamp domain from human HDBP1 in complex with DNA Descriptor: DNA (5'-D(*GP*TP*CP*CP*CP*GP*GP*CP*AP*TP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*CP*CP*GP*GP*GP*AP*C)-3'), SLC2A4 regulator, ... Authors: Duan, B, Xia, B. Deposit date: 2021-01-04 Release date: 2021-07-21 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Selective Nonmethylated CpG DNA Recognition Mechanism of Cysteine Clamp Domains. J.Am.Chem.Soc., 143, 2021
1EZN	SOLUTION STRUCTURE OF A DNA THREE-WAY JUNCTION Descriptor: DNA THREE-WAY JUNCTION Authors: van Buuren, B.N.M, Overmars, F.J, Ippel, J.H, Altona, C, Wijmenga, S.S. Deposit date: 2000-05-11 Release date: 2001-04-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a DNA three-way junction containing two unpaired thymidine bases. Identification of sequence features that decide conformer selection. J.Mol.Biol., 304, 2000
1F3S	Solution Structure of DNA Sequence GGGTTCAGG Forms GGGG Tetrade and G(C-A) Triad. Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*CP*AP*GP*G)-3') Authors: Kettani, A, Basu, G, Gorin, A, Majumdar, A, Skripkin, E, Patel, D.J. Deposit date: 2000-06-06 Release date: 2000-11-13 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A two-stranded template-based approach to G.(C-A) triad formation: designing novel structural elements into an existing DNA framework. J.Mol.Biol., 301, 2000
5XJZ	Structure of DNA1-Ag complex Descriptor: DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*C)-3'), SILVER ION, SPERMINE Authors: Liu, H.H, Gan, J.H. Deposit date: 2017-05-04 Release date: 2017-12-06 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (0.98 Å) Cite: A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs Angew. Chem. Int. Ed. Engl., 56, 2017
1VTV	Molecular structure of (M5DC-DG)3: The role of the methyl group on 5-methyl cytosine in stabilizing Z-DNA Descriptor: DNA (5'-D(*(CH3)CP*GP*(CH3)CP*GP*(CH3)CP*G)-3') Authors: Fujii, S, Wang, A.H.-J, Van Der Marel, G.A, Van Boom, J.H, Rich, A. Deposit date: 1989-01-10 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Molecular Structure of (m5dC-dG)3: The Role of the Methyl Group on 5-Methyl Cytosine in Stabilizing Z-DNA Nucleic Acids Res., 10, 1982
2ZCJ	Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy Descriptor: DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), Modification methylase HhaI, ... Authors: Shieh, F.K, Reich, N.O. Deposit date: 2007-11-09 Release date: 2007-12-04 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.75 Å) Cite: AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI J.Mol.Biol., 373, 2007
5UUF	Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing an abasic site (12-mer product complex) Descriptor: DNA (5'-D(*CP*CP*CP*CP*AP*(ORP)P*AP*GP*CP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*GP*CP*TP*TP*TP*GP*GP*GP*G)-3'), DNA-7-methylguanine glycosylase, ... Authors: Mullins, E.A, Eichman, B.F. Deposit date: 2017-02-16 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.612 Å) Cite: Toxicity and repair of DNA adducts produced by the natural product yatakemycin. Nat. Chem. Biol., 13, 2017
3MHT	TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY Descriptor: DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE (E.C.2.1.1.73)), ... Authors: O'Gara, M, Klimasauskas, S, Roberts, R.J, Cheng, X. Deposit date: 1996-07-24 Release date: 1997-01-27 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes. J.Mol.Biol., 261, 1996
7FEF	Crystal structure of AtMBD6 with DNA Descriptor: DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3'), Methyl-CpG-binding domain-containing protein 6 Authors: Wu, Z.B, Liu, K, Min, J.R. Deposit date: 2021-07-19 Release date: 2021-12-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Family-wide Characterization of Methylated DNA Binding Ability of Arabidopsis MBDs. J.Mol.Biol., 434, 2022
4QEP	crystal structure of KRYPTONITE in complex with mCHG DNA and SAH Descriptor: DNA (5'-D(*AP*CP*TP*GP*CP*TP*GP*AP*GP*TP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*TP*(5CM)P*AP*GP*CP*AP*GP*TP*AP*T)-3'), Histone-lysine N-methyltransferase, ... Authors: Du, J, Li, S, Patel, D.J. Deposit date: 2014-05-17 Release date: 2014-07-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE. Mol.Cell, 55, 2014
6KKV	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis Descriptor: DNA ligase A, N-[(4-methylphenyl)methyl]-1H-pyrrole-2-carboxamide, SULFATE ION Authors: Ramachandran, R, Shukla, A, Afsar, M. Deposit date: 2019-07-27 Release date: 2020-07-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.56 Å) Cite: Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A. J.Struct.Biol., 213, 2021
4QEN	crystal structure of KRYPTONITE in complex with mCHH DNA and SAH Descriptor: DNA (5'-D(*AP*CP*TP*GP*AP*TP*GP*AP*GP*TP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*TP*(5CM)P*AP*TP*CP*AP*GP*TP*AP*T)-3'), Histone-lysine N-methyltransferase, ... Authors: Du, J, Li, S, Patel, D.J. Deposit date: 2014-05-17 Release date: 2014-07-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.002 Å) Cite: Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE. Mol.Cell, 55, 2014
3PVI	D34G MUTANT OF PVUII ENDONUCLEASE COMPLEXED WITH COGNATE DNA SHOWS THAT ASP34 IS DIRECTLY INVOLVED IN DNA RECOGNITION AND INDIRECTLY INVOLVED IN CATALYSIS Descriptor: DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3'), PROTEIN (PVUII ENDONUCLEASE) Authors: Horton, J.R, Cheng, X. Deposit date: 1998-10-09 Release date: 1998-10-14 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Asp34 of PvuII endonuclease is directly involved in DNA minor groove recognition and indirectly involved in catalysis. J.Mol.Biol., 284, 1998
2Z6U	Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy Descriptor: DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), Modification methylase HhaI, ... Authors: Shieh, F.K. Deposit date: 2007-08-09 Release date: 2007-11-20 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.72 Å) Cite: AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI J.Mol.Biol., 373, 2007
4D05	Structure and activity of a minimal-type ATP-dependent DNA ligase from a psychrotolerant bacterium Descriptor: ADENOSINE MONOPHOSPHATE, ATP-DEPENDENT DNA LIGASE, MAGNESIUM ION, ... Authors: Williamson, A, Rothweiler, U, Leiros, H.-K.S. Deposit date: 2014-04-24 Release date: 2014-11-12 Last modified: 2019-06-26 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Enzyme-Adenylate Structure of a Bacterial ATP-Dependent DNA Ligase with a Minimized DNA-Binding Surface Acta Crystallogr.,Sect.D, 70, 2014
7WM3	hnRNP A2/B1 RRMs in complex with single-stranded DNA Descriptor: DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), Heterogeneous nuclear ribonucleoproteins A2/B1 Authors: Abula, A, Liu, Y, Guo, H, Li, T, Ji, X. Deposit date: 2022-01-14 Release date: 2022-06-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Structural Insight Into hnRNP A2/B1 Homodimerization and DNA Recognition. J.Mol.Biol., 435, 2022
5UZF	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure Descriptor: DNA (5'-D(*CP*GP*AP*TP*TP*TP*TP*TP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*AP*AP*AP*AP*TP*CP*G)-3') Authors: Sathyamoorthy, B, Shi, H, Xue, Y, Al-Hashimi, H.M. Deposit date: 2017-02-26 Release date: 2017-04-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A. Nucleic Acids Res., 45, 2017
5UZD	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure Descriptor: DNA (5'-D(*GP*CP*AP*TP*CP*GP*AP*TP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*TP*CP*GP*AP*TP*GP*C)-3') Authors: Sathyamoorthy, B, Shi, H, Xue, Y, Al-Hashimi, H.M. Deposit date: 2017-02-26 Release date: 2017-04-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A. Nucleic Acids Res., 45, 2017
3PT6	Crystal structure of mouse DNMT1(650-1602) in complex with DNA Descriptor: DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3'), DNA (cytosine-5)-methyltransferase 1, ... Authors: Song, J, Patel, D.J. Deposit date: 2010-12-02 Release date: 2010-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation. Science, 331, 2011
7X5K	Tir-dsDNA complex, the initial binding state Descriptor: DNA (43-MER), Flax rust resistance protein Authors: Tan, Y, Xu, C, Yu, D, Song, W, Wu, B, Schulze-Lefert, P, Chai, J. Deposit date: 2022-03-04 Release date: 2022-06-08 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death. Cell, 185, 2022
2RPD	Mhr1p-bound ssDNA Descriptor: DNA (5'-D(*DTP*DAP*DCP*DG)-3') Authors: Masuda, T, Ito, Y, Shibata, T, Mikawa, T. Deposit date: 2008-05-15 Release date: 2009-05-26 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
2RPF	RecO-bound ssDNA Descriptor: DNA (5'-D(*DTP*DAP*DCP*DG)-3') Authors: Masuda, T, Ito, Y, Shibata, T, Mikawa, T. Deposit date: 2008-05-15 Release date: 2009-05-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009

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