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1ETS
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BU of 1ets by Molmil
REFINED 2.3 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF BOVINE THROMBIN COMPLEXES FORMED WITH THE BENZAMIDINE AND ARGININE-BASED THROMBIN INHIBITORS NAPAP, 4-TAPAP AND MQPA: A STARTING POINT FOR IMPROVING ANTITHROMBOTICS
Descriptor: 1-[N-(naphthalen-2-ylsulfonyl)glycyl-4-carbamimidoyl-D-phenylalanyl]piperidine, EPSILON-THROMBIN
Authors:Bode, W, Brandstetter, H.
Deposit date:1992-07-06
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Refined 2.3 A X-ray crystal structure of bovine thrombin complexes formed with the benzamidine and arginine-based thrombin inhibitors NAPAP, 4-TAPAP and MQPA. A starting point for improving antithrombotics.
J.Mol.Biol., 226, 1992
185D
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BU of 185d by Molmil
SEQUENCE SPECIFICITY OF QUINOXALINE ANTIBIOTICS. 1. SOLUTION STRUCTURE OF A 1:1 COMPLEX BETWEEN TRIOSTIN A AND [D(GACGTC)]2 AND COMPARISON WITH THE SOLUTION STRUCTURE OF THE [N-MECYS3, N-MECYS7]TANDEM-[D(GATATC)]2 COMPLEX
Descriptor: 2-CARBOXYQUINOXALINE, DNA (5'-D(*GP*AP*CP*GP*TP*C)-3'), TRIOSTIN A
Authors:Addess, K.J, Feigon, J.
Deposit date:1994-08-10
Release date:1995-02-07
Last modified:2017-11-01
Method:SOLUTION NMR
Cite:Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of a 1:1 Complex between Triostin a and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-Mecys3,N-Mecys7]Tandem-[D(Gatatc)]2 Complex.
Biochemistry, 33, 1994
4JQD
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Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator complex
Descriptor: Csp231I C protein, DNA (5'-D(*AP*CP*AP*CP*TP*AP*AP*GP*GP*AP*AP*AP*AP*CP*TP*TP*AP*GP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*AP*CP*TP*AP*AP*GP*TP*TP*TP*TP*CP*CP*TP*TP*AP*GP*TP*GP*T)-3')
Authors:Shevtsov, M.B, Streeter, S.D, Thresh, S.J, McGeehan, J.E, Kneale, G.G.
Deposit date:2013-03-20
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression.
Acta Crystallogr.,Sect.D, 71, 2015
1BXH
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CONCANAVALIN A COMPLEXED TO METHYL ALPHA1-2 MANNOBIOSIDE
Descriptor: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ...
Authors:Moothoo, D.N, Canaan, B, Field, R.A, Naismith, J.H.
Deposit date:1998-10-02
Release date:1998-10-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Man alpha1-2 Man alpha-OMe-concanavalin A complex reveals a balance of forces involved in carbohydrate recognition.
Glycobiology, 9, 1999
3V8C
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BU of 3v8c by Molmil
Crystal structure of monoclonal human anti-rhesus D Fc IgG1 t125(yb2/0) double mutant (H310 and H435 in K)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, GLYCEROL, ...
Authors:Menez, R, Stura, E.A, Bourel, D, Siberil, S, Jorieux, S, De Romeuf, C, Ducancel, F, Fridman, W.H, Teillaud, J.L.
Deposit date:2011-12-22
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Effect of zinc on human IgG1 and its Fc gamma R interactions.
Immunol.Lett., 143, 2012
2R3C
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BU of 2r3c by Molmil
Structure of the gp41 N-peptide in complex with the HIV entry inhibitor PIE1
Descriptor: CHLORIDE ION, HIV entry inhibitor PIE1, YTTRIUM (III) ION, ...
Authors:VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S.
Deposit date:2007-08-29
Release date:2007-10-02
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Potent D-peptide inhibitors of HIV-1 entry
Proc.Natl.Acad.Sci.Usa, 104, 2007
1RS9
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BU of 1rs9 by Molmil
Bovine endothelial NOS heme domain with D-phenylalanine-D-nitroarginine amide bound
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, CACODYLATE ION, ...
Authors:Flinspach, M, Li, H, Jamal, J, Yang, W, Huang, H, Silverman, R.B, Poulos, T.L.
Deposit date:2003-12-09
Release date:2004-06-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structures of the neuronal and endothelial nitric oxide synthase heme domain with D-nitroarginine-containing dipeptide inhibitors bound.
Biochemistry, 43, 2004
1HIZ
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Xylanase T6 (Xt6) from Bacillus Stearothermophilus
Descriptor: ENDO-1,4-BETA-XYLANASE, SULFATE ION, alpha-D-galactopyranose, ...
Authors:Sainz, G, Tepplitsky, A, Stojanoff, V, Thompson, A, Shoham, Y, Shoham, G.
Deposit date:2001-01-05
Release date:2002-01-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure Determination of the Extracellular Xylanase from Geobacillus Stearothermophilus by Selenomethionyl MAD Phasing
Acta Crystallogr.,Sect.D, 60, 2004
2AAC
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BU of 2aac by Molmil
ESCHERCHIA COLI GENE REGULATORY PROTEIN ARAC COMPLEXED WITH D-FUCOSE
Descriptor: ACETIC ACID, ARAC, beta-D-fucopyranose
Authors:Soisson, S.M, Wolberger, C.
Deposit date:1996-10-31
Release date:1997-11-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The 1.6 A crystal structure of the AraC sugar-binding and dimerization domain complexed with D-fucose.
J.Mol.Biol., 273, 1997
2R5B
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BU of 2r5b by Molmil
Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7
Descriptor: HIV entry inhibitor PIE7, SULFATE ION, gp41 N-peptide
Authors:VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S.
Deposit date:2007-09-03
Release date:2007-10-02
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Potent D-peptide inhibitors of HIV-1 entry
Proc.Natl.Acad.Sci.Usa, 104, 2007
2R5D
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BU of 2r5d by Molmil
Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, HIV entry inhibitor PIE7, ...
Authors:VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S.
Deposit date:2007-09-03
Release date:2007-10-02
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Potent D-peptide inhibitors of HIV-1 entry
Proc.Natl.Acad.Sci.Usa, 104, 2007
2RID
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BU of 2rid by Molmil
Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with Allyl 7-O-carbamoyl-L-glycero-D-manno-heptopyranoside
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, prop-2-en-1-yl 7-O-carbamoyl-L-glycero-alpha-D-manno-heptopyranoside
Authors:Wang, H, Head, J, Kosma, P, Sheikh, S, McDonald, B, Smith, K, Cafarella, T, Seaton, B, Crouch, E.
Deposit date:2007-10-10
Release date:2008-01-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d.
Biochemistry, 47, 2008
1OJJ
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BU of 1ojj by Molmil
Anatomy of glycosynthesis: Structure and kinetics of the Humicola insolens Cel7BE197A and E197S glycosynthase mutants
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDOGLUCANASE I, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Ducros, V.M.-A, Tarling, C.A, Zechel, D.L, Brzozowski, A.M, Frandsen, T.P, Von Ossowski, I, Schulein, M, Withers, S.G, Davies, G.J.
Deposit date:2003-07-10
Release date:2004-01-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Anatomy of Glycosynthesis: Structure and Kinetics of the Humicola Insolens Cel7B E197A and E197S Glycosynthase Mutants
Chem.Biol., 10, 2003
2JFP
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BU of 2jfp by Molmil
Crystal structure of Enterococcus faecalis glutamate racemase in complex with D- Glutamate
Descriptor: CALCIUM ION, D-GLUTAMIC ACID, GLUTAMATE RACEMASE
Authors:Lundqvist, T.
Deposit date:2007-02-03
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Exploitation of Structural and Regulatory Diversity in Glutamate Racemases
Nature, 447, 2007
3V7M
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BU of 3v7m by Molmil
Crystal structure of monoclonal human anti-Rhesus D Fc IgG1 T125(YB2/0) in the presence of Zn2+
Descriptor: GLYCEROL, IMIDAZOLE, Ig gamma-1 chain C region, ...
Authors:Menez, R, Stura, E.A, Bourel, D, Siberil, S, Jorieux, S, De Romeuf, C, Ducancel, F, Fridman, W.H, Teillaud, J.L.
Deposit date:2011-12-21
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Effect of zinc on human IgG1 and its Fc gamma R interactions.
Immunol.Lett., 143, 2012
2JFZ
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BU of 2jfz by Molmil
Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate and an inhibitor
Descriptor: 5-METHYL-7-(2-METHYLPROPYL)-2-(NAPHTHALEN-1-YLMETHYL)-3-PYRIDIN-4-YL-2H-PYRAZOLO[3,4-D]PYRIMIDINE-4,6(5H,7H)-DIONE, D-GLUTAMIC ACID, GLUTAMATE RACEMASE
Authors:Lundqvist, T.
Deposit date:2007-02-06
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Exploitation of Structural and Regulatory Diversity in Glutamate Racemases
Nature, 447, 2007
1FZC
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BU of 1fzc by Molmil
CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH TWO DIFFERENT BOUND LIGANDS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Everse, S.J, Spraggon, G, Veerapandian, L, Riley, M, Doolittle, R.F.
Deposit date:1998-05-19
Release date:1998-10-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of fragment double-D from human fibrin with two different bound ligands.
Biochemistry, 37, 1998
4HMG
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BU of 4hmg by Molmil
REFINEMENT OF THE INFLUENZA VIRUS HEMAGGLUTININ BY SIMULATED ANNEALING
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HEMAGGLUTININ, CHAIN HA1, ...
Authors:Weis, W.I, Bruenger, A.T, Skehel, J.J, Wiley, D.C.
Deposit date:1989-09-11
Release date:1991-01-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Refinement of the influenza virus hemagglutinin by simulated annealing.
J.Mol.Biol., 212, 1990
3WLM
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BU of 3wlm by Molmil
Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme exo1 in complex with octyl-O-glucoside
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-D-glucan exohydrolase isoenzyme ExoI, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Streltsov, V.A, Hrmova, M.
Deposit date:2013-11-12
Release date:2015-03-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site.
Nat Commun, 10, 2019
2OVW
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BU of 2ovw by Molmil
ENDOGLUCANASE I COMPLEXED WITH CELLOBIOSE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDOGLUCANASE I, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Sulzenbacher, G, Davies, G.J, Schulein, M.
Deposit date:1997-04-04
Release date:1998-04-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the endoglucanase I from Fusarium oxysporum: native, cellobiose, and 3,4-epoxybutyl beta-D-cellobioside-inhibited forms, at 2.3 A resolution.
Biochemistry, 36, 1997
3RUL
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BU of 3rul by Molmil
New strategy to analyze structures of glycopeptide-target complexes
Descriptor: 10-METHYLUNDECANOIC ACID, 2-amino-2-deoxy-beta-D-glucopyranuronic acid, CHLORIDE ION, ...
Authors:Economou, N.J, Nahoum, V, Weeks, S.D, Grasty, K.C, Loll, P.J.
Deposit date:2011-05-05
Release date:2012-06-06
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A carrier protein strategy yields the structure of dalbavancin.
J.Am.Chem.Soc., 134, 2012
1OJK
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Anatomy of glycosynthesis: Structure and kinetics of the Humicola insolens Cel7BE197A and E197S glycosynthase mutants
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDOGLUCANASE I, GLYCEROL, ...
Authors:Ducros, V.M.-A, Tarling, C.A, Zechel, D.L, Brzozowski, A.M, Frandsen, T.P, Von Ossowski, I, Schulein, M, Withers, S.G, Davies, G.J.
Deposit date:2003-07-10
Release date:2004-01-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Anatomy of Glycosynthesis: Structure and Kinetics of the Humicola Insolens Cel7B E197A and E197S Glycosynthase Mutants
Chem.Biol., 10, 2003
1H6M
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Covalent glycosyl-enzyme intermediate of hen egg white lysozyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-glucopyranose, LYSOZYME C, SODIUM ION
Authors:Vocadlo, D.J, Davies, G.J, Laine, R, Withers, S.G.
Deposit date:2001-06-19
Release date:2001-08-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Catalysis by Hen Egg-White Lysozyme Proceeds Via a Covalent Intermediate
Nature, 412, 2001
1OH4
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Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module
Descriptor: BETA-MANNOSIDASE, CALCIUM ION, GLYCEROL, ...
Authors:Boraston, A.B, Revett, T.J, Boraston, C.M, Nurizzo, D, Davies, G.J.
Deposit date:2003-05-21
Release date:2004-03-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural and Thermodynamic Dissection of Specific Mannan Recognition by a Carbohydrate Binding Module, Tmcbm27
Structure, 11, 2003
1QX1
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Golgi alpha-mannosidase II D341N mutant complex with 2-F-mannosyl-F
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-deoxy-2-fluoro-beta-D-mannopyranosyl fluoride, ...
Authors:Numao, S, Kuntz, D.A, Withers, S.G, Rose, D.R.
Deposit date:2003-09-04
Release date:2003-10-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Insights into the mechanism of Drosophila melanogaster Golgi alpha-mannosidase II through the structural analysis of covalent reaction intermediates.
J.Biol.Chem., 278, 2003

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