PDB: 221716 resultsInfo pagesStatus searchChemie searchBIRD

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8U1T	SARS-CoV-2 Envelope Protein Transmembrane Domain: Dimeric Structure Determined by Solid-State NMR Descriptor: Envelope small membrane protein Authors: Zhang, R, Qin, H, Prasad, R, Fu, R, Zhou, H.X, Cross, T. Deposit date: 2023-09-02 Release date: 2023-11-15 Last modified: 2024-05-15 Method: SOLID-STATE NMR Cite: Dimeric Transmembrane Structure of the SARS-CoV-2 E Protein. Commun Biol, 6, 2023
8U1S	A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neuraminidase, mAb-393 heavy chain, ... Authors: Ferguson, J.A, Raghavan, S.S.R, Ward, A.B. Deposit date: 2023-09-02 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (3.21 Å) Cite: A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface To Be Published
8U1R	Prefusion-stabilized Langya virus F protein, variant G99C/I109C Descriptor: Fusion glycoprotein F Authors: Byrne, P.O, McLellan, J.S. Deposit date: 2023-09-01 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Prefusion-stabilized Langya virus F protein, variant G99C/I109C To Be Published
8U1Q	A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neuraminidase, mAb-2D10 heavy chain, ... Authors: Ferguson, J.A, Oeverdieck, S, Ward, A.B. Deposit date: 2023-09-01 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface To Be Published
8U1O	In situ cryo-EM structure of bacteriophage P22 tailspike protein complex at 3.4A resolution Descriptor: Tail spike protein Authors: Iglesias, S.M, Feng-Hou, C, Cingolani, G. Deposit date: 2023-09-01 Release date: 2023-11-29 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery. J.Mol.Biol., 435, 2023
8U1N	Cryo-EM structure of the cross-linked HSP90 dimer (NTD-MD) in the semi-open state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 83, MAGNESIUM ION Authors: Finci, L.I, Simanshu, D.K. Deposit date: 2023-09-01 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements. Commun Biol, 7, 2024
8U1M	Cryo-EM structure of the HSP90 dimer (NTD-MD) in the semi-open state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 83, MAGNESIUM ION Authors: Finci, L.I, Simanshu, D.K. Deposit date: 2023-09-01 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements. Commun Biol, 7, 2024
8U1L	Cryo-EM structure of the RAF1-HSP90-CDC37 complex in the closed state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 83, Hsp90 co-chaperone Cdc37, ... Authors: Finci, L.I, Simanshu, D.K. Deposit date: 2023-09-01 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements. Commun Biol, 7, 2024
8U1K	Cryo-EM of Caulobacter crescentus Tad pilus Descriptor: PilA Authors: Sonani, R.R, Sanchez, J.C, Baumgardt, J.K, Wright, E.R, Egelman, E.H. Deposit date: 2023-09-01 Release date: 2023-12-06 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Tad and toxin-coregulated pilus structures reveal unexpected diversity in bacterial type IV pili. Proc.Natl.Acad.Sci.USA, 120, 2023
8U1J	N-Terminal domain of DNA-Damage Response Protein C (DdrC) from Deinococcus radiodurans - Crystal form xMJ7102 Descriptor: DNA damage response protein C Authors: Szabla, R, Song, Y, Junop, M.S. Deposit date: 2023-09-01 Release date: 2023-09-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3 Å) Cite: Full-length dimer of DNA-Damage Response Protein C from Deinococcus radiodurans To Be Published
8U1G	Prefusion-stabilized SARS-CoV-2 S2 subunit Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S2 Authors: Hsieh, C.-L, McLellan, J.S. Deposit date: 2023-08-31 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of prefusion-stabilized SARS-CoV-2 S2-only antigen To Be Published
8U1F	FGFR2 Kinase Domain Bound to Irreversible Inhibitor Cmpd 10 Descriptor: Fibroblast growth factor receptor 2, GLYCEROL, N-[4-(4-amino-7-methyl-5-{4-[(4-methylpyrimidin-2-yl)oxy]phenyl}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)phenyl]-2-methylpropanamide, ... Authors: Valverde, R, Foster, L. Deposit date: 2023-08-31 Release date: 2024-02-14 Method: X-RAY DIFFRACTION (3.33 Å) Cite: Discovery of lirafugratinib (RLY-4008), a highly selective irreversible small-molecule inhibitor of FGFR2. Proc.Natl.Acad.Sci.USA, 121, 2024
8U1E	Apo protein tyrosine phosphatase 1B (PTP1B) at high resolution (1.43 A) in space group P43212 with two distinctly ordered chains Descriptor: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1 Authors: Sharma, S, Mehlman, S.T, Keedy, D.A. Deposit date: 2023-08-31 Release date: 2023-09-27 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.43 Å) Cite: High-resolution double vision of the allosteric phosphatase PTP1B. Acta Crystallogr.,Sect.F, 80, 2024
8U1D	Cryo-EM structure of vaccine-elicited CD4 binding site antibody DH1285 bound to HIV-1 CH505TFchim.6R.SOSIP.664v4.1 Env Local Refinement Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DH1285 Heavy Chain, DH1285 Light Chain, ... Authors: Thakur, B, Stalls, V.D, Acharya, P. Deposit date: 2023-08-31 Release date: 2024-01-03 Method: ELECTRON MICROSCOPY (4.25 Å) Cite: Rhesus macaque vaccine elicited antibody DH1285 Fab bound to the one of the gp120 promoter of CH505M5chimer.6R.SOSIP.664v4.1 Env To be published
8U1C	A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neuraminidase, mAb-400 heavy chain, ... Authors: Ferguson, J.A, Oeverdieck, S, Ward, A.B. Deposit date: 2023-08-31 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (2.89 Å) Cite: A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface To Be Published
8U18	Cryo-EM structure of murine Thrombopoietin receptor ectodomain in complex with Tpo Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Thrombopoietin, Thrombopoietin receptor,GCN4 isoform 1, ... Authors: Sarson-Lawrence, K.S, Hardy, J.M, Leis, A, Babon, J.J, Kershaw, N.J. Deposit date: 2023-08-30 Release date: 2024-02-07 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Cryo-EM structure of the extracellular domain of murine Thrombopoietin Receptor in complex with Thrombopoietin. Nat Commun, 15, 2024
8U17	The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-long bound to Pomalidomide Descriptor: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... Authors: Clifton, M.C, Ma, X, Ornelas, E. Deposit date: 2023-08-30 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon. Sci Rep, 13, 2023
8U16	The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-short bound to Pomalidomide Descriptor: 1,2-ETHANEDIOL, DNA damage-binding protein 1, Protein cereblon, ... Authors: Clifton, M.C, Ma, X, Ornelas, E. Deposit date: 2023-08-30 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon. Sci Rep, 13, 2023
8U15	The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-short bound to CC-220 Descriptor: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, DDB1, Protein cereblon, ... Authors: Clifton, M.C, Ma, X, Ornelas, E. Deposit date: 2023-08-30 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon. Sci Rep, 13, 2023
8U14	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 2) Descriptor: DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ... Authors: Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. Deposit date: 2023-08-30 Release date: 2024-01-17 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8U13	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 1) Descriptor: DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ... Authors: Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. Deposit date: 2023-08-30 Release date: 2024-01-17 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8U12	Crystal Structure of Antitoxin Protein Rv0298 of Type II Toxin-antitoxin Systems from Mycobacterium tuberculosis Descriptor: Antitoxin Rv0298, SULFATE ION Authors: Kim, Y, Tesar, C, Endres, M, Joachimiak, A, Center for Structural Biology of Infectious Diseases (CSBID) Deposit date: 2023-08-30 Release date: 2023-09-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of Antitoxin Protein Rv0298 of Type II Toxin-antitoxin Systems from Mycobacterium tuberculosis To Be Published
8U11	In situ cryo-EM structure of bacteriophage P22 gp1:gp5:gp4: gp10: gp9 N-term complex in conformation 2 at 3.1A resolution Descriptor: Major capsid protein, Packaged DNA stabilization protein gp10, Peptidoglycan hydrolase gp4, ... Authors: Iglesias, S, Feng-Hou, C, Cingolani, G. Deposit date: 2023-08-30 Release date: 2023-11-22 Last modified: 2023-11-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery. J.Mol.Biol., 435, 2023
8U10	In situ cryo-EM structure of bacteriophage P22 gp1:gp4:gp5:gp10:gp9 N-term complex in conformation 1 at 3.2A resolution Descriptor: Major capsid protein, Packaged DNA stabilization protein gp10, Peptidoglycan hydrolase gp4, ... Authors: Iglesias, S, Feng-Hou, C, Cingolani, G. Deposit date: 2023-08-30 Release date: 2023-11-22 Last modified: 2023-11-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery. J.Mol.Biol., 435, 2023
8U0Z	CRYSTAL STRUCTURE OF THE OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE DOMAIN OF Coffea arabica UMP SYNTHASE Descriptor: 1,2-ETHANEDIOL, ANY 5'-MONOPHOSPHATE NUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ... Authors: Hinojosa-Cruz, A, Diaz-Vilchis, A, Gonzalez-Segura, L. Deposit date: 2023-08-29 Release date: 2024-01-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.399 Å) Cite: Structural and functional properties of uridine 5'-monophosphate synthase from Coffea arabica. Int.J.Biol.Macromol., 259, 2024

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