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PDB: 36 results

3GXU
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Crystal structure of Eph receptor and ephrin complex
Descriptor: Ephrin type-A receptor 4, Ephrin-B2
Authors:Qin, H.N, Song, J.X.
Deposit date:2009-04-03
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of the EphA4-ephrin-B2 complex reveals new features enabling Eph-ephrin binding promiscuity
J.Biol.Chem., 2009
2LW8
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BU of 2lw8 by Molmil
NMR solution structure of Eph receptor
Descriptor: Ephrin type-A receptor 4
Authors:Qin, H, Song, J.
Deposit date:2012-07-24
Release date:2013-07-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR solution structure of Eph receptor
To be Published
2N6E
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BU of 2n6e by Molmil
NMR structure of a DUF1491 family protein (CC_1065) from Caulobacter crescentus CB15
Descriptor: Uncharacterized protein
Authors:Qin, H, Serrano, P, Wuthrich, K, Joint Center for Structural Genomics (JCSG)
Deposit date:2015-08-19
Release date:2015-10-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of a DUF1491 family protein (CC_1065) from Caulobacter crescentus CB15
To be Published
2OP7
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BU of 2op7 by Molmil
WW4
Descriptor: NEDD4-like E3 ubiquitin-protein ligase WWP1
Authors:Qin, H.N, Li, M.F, Pu, H, Sankaran, S, Ahmed, S, Song, J.X.
Deposit date:2007-01-27
Release date:2007-12-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of the forth WW domain of WWP1
To be Published
3WG6
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BU of 3wg6 by Molmil
Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH
Descriptor: Conjugated polyketone reductase C1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
Deposit date:2013-07-28
Release date:2013-08-21
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH.
Proteins, 81, 2013
5GMT
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Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai
Descriptor: Alginate lyase
Authors:Qin, H.-M, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2016-07-16
Release date:2017-01-04
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure and Polymannuronate Specificity of a Eukaryotic Member of Polysaccharide Lyase Family 14.
J. Biol. Chem., 292, 2017
4H8N
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BU of 4h8n by Molmil
Crystal structure of conjugated polyketone reductase C2 from candida parapsilosis complexed with NADPH
Descriptor: Conjugated polyketone reductase C2, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
Deposit date:2012-09-23
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding
Appl.Microbiol.Biotechnol., 98, 2014
2MDK
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BU of 2mdk by Molmil
NMR Solution Structure of MSP-P56S Domain/VAPB in DPC
Descriptor: Vesicle-associated membrane protein-associated protein B/C
Authors:Qin, H, Lim, L, Song, J.
Deposit date:2013-09-11
Release date:2013-10-30
Method:SOLUTION NMR
Cite:MSP-P56S Domain, VAPB in DPC
To be Published
3WGB
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BU of 3wgb by Molmil
Crystal structure of aeromonas jandaei L-allo-threonine aldolase
Descriptor: GLYCINE, L-allo-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
Authors:Qin, H.M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Ohtsuka, J, Hou, F, Nagata, K, Shimizu, S, Tanokura, M.
Deposit date:2013-08-03
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity.
Acta Crystallogr.,Sect.D, 70, 2014
3WGC
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BU of 3wgc by Molmil
Aeromonas jandaei L-allo-threonine aldolase H128Y/S292R double mutant
Descriptor: L-allo-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
Authors:Qin, H.M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Ohtsuka, J, Hou, F, Nagata, K, Shimizu, S, Tanokura, M.
Deposit date:2013-08-03
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity.
Acta Crystallogr.,Sect.D, 70, 2014
2KOU
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BU of 2kou by Molmil
DICER LIKE protein
Descriptor: Dicer-like protein 4
Authors:Qin, H, Song, J, Yuan, Y.A.
Deposit date:2009-09-30
Release date:2010-02-16
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Structure of the Arabidopsis thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction
Rna, 2010
5WUT
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BU of 5wut by Molmil
Crystal structure of laminarinase from Flavobacterium sp. UMI-01
Descriptor: ULam111
Authors:Qin, H.M, Miyakawa, Y, Nakamura, A, Tanokura, M.
Deposit date:2016-12-21
Release date:2018-01-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of laminarinase from Flavobacterium sp. UMI-01
To Be Published
3VXG
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BU of 3vxg by Molmil
Crystal structure of conjugated polyketone reductase C2 from Candida Parapsilosis
Descriptor: Conjugated polyketone reductase C2
Authors:Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
Deposit date:2012-09-13
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding
Appl.Microbiol.Biotechnol., 98, 2014
3W20
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BU of 3w20 by Molmil
Crystal Structure of a Novel N-Substituted L-Amino Acid Dioxygenase from Burkholderia ambifaria AMMD
Descriptor: Putative uncharacterized protein, ZINC ION
Authors:Qin, H.M, Miyakawa, T, Jia, M.Z, Nakamura, A, Ohtsuka, J, Xue, Y.L, Kawashima, T, Kasahara, T, Hibi, M, Ogawa, J, Tanokura, M.
Deposit date:2012-11-26
Release date:2013-07-17
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of a Novel N-Substituted L-Amino Acid Dioxygenase from Burkholderia ambifaria AMMD
Plos One, 8, 2013
3W21
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BU of 3w21 by Molmil
Crystal Structure of a Novel N-Substituted L-Amino Acid Dioxygenase in complex with alpha-KG from Burkholderia ambifaria AMMD
Descriptor: 2-OXOGLUTARIC ACID, Putative uncharacterized protein, ZINC ION
Authors:Qin, H.M, Miyakawa, T, Jia, M.Z, Nakamura, A, Ohtsuka, J, Xue, Y.L, Kawashima, T, Kasahara, T, Hibi, M, Ogawa, J, Tanokura, M.
Deposit date:2012-11-26
Release date:2013-07-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal Structure of a Novel N-Substituted L-Amino Acid Dioxygenase from Burkholderia ambifaria AMMD
Plos One, 8, 2013
3WLX
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BU of 3wlx by Molmil
Crystal structure of low-specificity L-threonine aldolase from Escherichia coli
Descriptor: Low specificity L-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
Authors:Qin, H.-M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Hou, F, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
Deposit date:2013-11-15
Release date:2014-12-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure analysis of L-threonine aldolase from Escherichia coli unravels the low-specificity and thermostability
To be Published
3YGS
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BU of 3ygs by Molmil
APAF-1 CARD IN COMPLEX WITH PRODOMAIN OF PROCASPASE-9
Descriptor: APOPTOTIC PROTEASE ACTIVATING FACTOR 1, PROCASPASE 9
Authors:Qin, H, Srinivasula, S, Wu, G, Fernandes-Alnemri, T, Alnemri, E, Shi, Y.
Deposit date:1999-05-08
Release date:2000-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1.
Nature, 399, 1999
5Y33
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BU of 5y33 by Molmil
Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals polymannuronate specificity
Descriptor: Alginate lyase
Authors:Qin, H.-M, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2017-07-27
Release date:2018-07-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural basis for controlling the enzymatic properties of polymannuronate preferred alginate lyase FlAlyA from the PL-7 family.
Chem. Commun. (Camb.), 54, 2018
6JQ9
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BU of 6jq9 by Molmil
Crystal structure of a lyase from Alteromonas sp.
Descriptor: CALCIUM ION, SULFATE ION, Short ulvan lyase
Authors:Qin, H.M, Guo, Q.Q.
Deposit date:2019-03-29
Release date:2020-04-01
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Biochemical characterization and structural analysis of ulvan lyase from marine Alteromonas sp. reveals the basis for its salt tolerance.
Int.J.Biol.Macromol., 147, 2020
6JQX
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BU of 6jqx by Molmil
Crystal structure of a hydrogenase from Trichosporon moniliiforme
Descriptor: 2-HYDROXYBENZOIC ACID, Salicylate decarboxylase, ZINC ION
Authors:Qin, H.M, Chen, X.T.
Deposit date:2019-04-01
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.672 Å)
Cite:Structural Basis of Salicylic Acid Decarboxylase Reveals a Unique Substrate Recognition Mode and Access Channel.
J.Agric.Food Chem., 69, 2021
5ZSY
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BU of 5zsy by Molmil
RBM10-RRM2 domain and its lung cancer related mutant
Descriptor: RNA-binding protein 10
Authors:Qin, H.
Deposit date:2018-04-30
Release date:2019-06-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural, dynamics, and RNA binding comparison between RBM10-RRM2 domain and its lung cancer related mutation.
To be published
5ZSW
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BU of 5zsw by Molmil
RBM10-RRM2 domain and its lung cancer related mutant
Descriptor: RNA-binding protein 10
Authors:Qin, H.
Deposit date:2018-04-30
Release date:2019-05-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural, dynamics, and RNA binding comparison between RBM10-RRM2 domain and its lung cancer related mutation.
To be published
6JQW
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BU of 6jqw by Molmil
Crystal structure of a hydrogenase from Trichosporon moniliiforme
Descriptor: Salicylate decarboxylase, ZINC ION
Authors:Qin, H.M, Chen, X.T.
Deposit date:2019-04-01
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.437 Å)
Cite:Structural Basis of Salicylic Acid Decarboxylase Reveals a Unique Substrate Recognition Mode and Access Channel.
J.Agric.Food Chem., 69, 2021
8U1T
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BU of 8u1t by Molmil
SARS-CoV-2 Envelope Protein Transmembrane Domain: Dimeric Structure Determined by Solid-State NMR
Descriptor: Envelope small membrane protein
Authors:Zhang, R, Qin, H, Prasad, R, Fu, R, Zhou, H.X, Cross, T.
Deposit date:2023-09-02
Release date:2023-11-15
Method:SOLID-STATE NMR
Cite:Dimeric Transmembrane Structure of the SARS-CoV-2 E Protein.
Commun Biol, 6, 2023
2L0J
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BU of 2l0j by Molmil
Solid State NMR structure of the M2 proton channel from Influenza A Virus in hydrated lipid bilayer
Descriptor: Matrix protein 2
Authors:Sharma, M, Yi, M, Dong, H, Qin, H, Peterson, E, Busath, D.D, Zhou, H.X, Cross, T.A.
Deposit date:2010-07-08
Release date:2010-11-03
Last modified:2011-07-13
Method:SOLID-STATE NMR
Cite:Insight into the mechanism of the influenza a proton channel from a structure in a lipid bilayer.
Science, 330, 2010

 

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