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PDB: 249 results

4B02
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BU of 4b02 by Molmil
The C-terminal Priming Domain is Strongly Associated with the Main Body of Bacteriophage phi6 RNA-Dependent RNA Polymerase
Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Sarin, L.P, Wright, S, Chen, Q, Degerth, L.H, Stuart, D.I, Grimes, J.M, Bamford, D.H, Poranen, M.M.
Deposit date:2012-06-27
Release date:2012-08-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The C-Terminal Priming Domain is Strongly Associated with the Main Body of Bacteriophage Phi6 RNA-Dependent RNA Polymerase.
Virology, 432, 2012
2B43
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BU of 2b43 by Molmil
Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
Descriptor: non-structural polyprotein
Authors:Hogbom, M, Rohayem, J, Unge, T, Jones, T.A.
Deposit date:2005-09-22
Release date:2005-10-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
To be Published
5TSN
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BU of 5tsn by Molmil
Crystal structures of Norwalk virus polymerase bound to an RNA primer-template duplex
Descriptor: MANGANESE (II) ION, Norwalk virus polymerase, RNA (5'-R(*UP*GP*CP*CP*CP*GP*GP*G)-3')
Authors:Shaik, M.M, Ng, K.K.
Deposit date:2016-10-30
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Norovirus RNA-dependent RNA polymerase: A computational study of metal-binding preferences.
Proteins, 85, 2017
6GVY
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BU of 6gvy by Molmil
Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with an template -primer RNA
Descriptor: GLYCEROL, Genome polyprotein, RNA (5'-R(P*CP*CP*GP*GP*G)-3'), ...
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2018-06-21
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis.
J. Virol., 92, 2018
6GVV
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BU of 6gvv by Molmil
Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus
Descriptor: GLYCEROL, RNA polymerase 3D
Authors:Verdaguer, N, Ferrer Orta, C.
Deposit date:2018-06-21
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis.
J.Virol., 92, 2018
1RA7
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BU of 1ra7 by Molmil
Poliovirus Polymerase with GTP
Descriptor: ACETIC ACID, GUANOSINE-5'-TRIPHOSPHATE, Genome polyprotein
Authors:Thompson, A.A, Peersen, O.B.
Deposit date:2003-10-31
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase.
Embo J., 23, 2004
1RAJ
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BU of 1raj by Molmil
Poliovirus Polymerase with a 68 residue N-terminal truncation
Descriptor: Genome polyprotein
Authors:Thompson, A.A, Peersen, O.B.
Deposit date:2003-10-31
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase.
Embo J., 23, 2004
8C2P
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BU of 8c2p by Molmil
FMDV 3D polymerase in complex with 3B3
Descriptor: Protein 3B-3, RNA-directed RNA polymerase 3D-POL
Authors:Ferrer-Orta, C, Veraguer, N.
Deposit date:2022-12-22
Release date:2023-04-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Dual role of the foot-and-mouth disease virus 3B1 protein in the replication complex: As protein primer and as an essential component to recruit 3Dpol to membranes.
Plos Pathog., 19, 2023
8C1N
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BU of 8c1n by Molmil
FMDV 3D polymerase in complex with 3B1 protein solved in P212121 space group
Descriptor: ACETATE ION, GLYCEROL, Protein 3B-1, ...
Authors:Ferrer-Orta, C, Veraguer, N.
Deposit date:2022-12-20
Release date:2023-04-26
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dual role of the foot-and-mouth disease virus 3B1 protein in the replication complex: As protein primer and as an essential component to recruit 3Dpol to membranes.
Plos Pathog., 19, 2023
4WFZ
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BU of 4wfz by Molmil
Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase - NaCl Crystal Form
Descriptor: RNA-directed RNA polymerase, SODIUM ION
Authors:Peersen, O.B, McDonald, S.M.
Deposit date:2014-09-17
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases.
J.Virol., 89, 2015
4WFY
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BU of 4wfy by Molmil
Coxsackievirus B3 Polymerase - F232L Mutant - AmSO4 Crystal Form
Descriptor: GLYCEROL, RNA-directed RNA polymerase, SULFATE ION
Authors:Peersen, O.B, McDonald, S.M.
Deposit date:2014-09-17
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure-Function Relationships Underlying the Replication Fidelity of Viral RNA-Dependent RNA Polymerases.
J.Virol., 89, 2015
4R0E
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BU of 4r0e by Molmil
Crystal Structure of the Poliovirus RNA-Dependent RNA Polymerase Low-Fidelity Mutant 3Dpol H273R
Descriptor: RNA-directed RNA polymerase
Authors:Marcotte, L.L, Gohara, D.W, Filman, D.J, Hogle, J.M.
Deposit date:2014-07-30
Release date:2014-11-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Dynamics as a Contributor to Error-prone Replication by an RNA-dependent RNA Polymerase.
J.Biol.Chem., 289, 2014
4QPX
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BU of 4qpx by Molmil
NV polymerase post-incorporation-like complex
Descriptor: GLYCEROL, MANGANESE (II) ION, Polyprotein, ...
Authors:Zamyatkin, D.F, Parra, F, Grochulski, P, Ng, K.K.S.
Deposit date:2014-06-25
Release date:2015-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of a backtracked state reveals conformational changes similar to the state following nucleotide incorporation in human norovirus polymerase.
Acta Crystallogr.,Sect.D, 70, 2014
5N8X
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BU of 5n8x by Molmil
Trigonal structure of mutant V173I of 3D polymerase from Foot-and-Mouth Disease Virus
Descriptor: 3D polymerase, GLYCEROL, MANGANESE (II) ION
Authors:Ferrer-Orta, C, Verdaguer, N.
Deposit date:2017-02-24
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular and Functional Bases of Selection against a Mutation Bias in an RNA Virus.
Genome Biol Evol, 9, 2017
5N95
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BU of 5n95 by Molmil
Tetragonal structure of mutant V173I of 3D polymerase from Foot-and-Mouth Disease Virus
Descriptor: 3D polymerase, TRIPHOSPHATE
Authors:Ferrer-Orta, C, Verdaguer, N.
Deposit date:2017-02-24
Release date:2017-05-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular and Functional Bases of Selection against a Mutation Bias in an RNA Virus.
Genome Biol Evol, 9, 2017
3QID
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BU of 3qid by Molmil
Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase
Descriptor: GLYCEROL, MANGANESE (III) ION, RNA dependent RNA polymerase, ...
Authors:Kim, K.H, Intekhab, A, Lee, J.H.
Deposit date:2011-01-27
Release date:2011-12-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of murine norovirus-1 RNA-dependent RNA polymerase.
J.Gen.Virol., 92, 2011
6QWT
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BU of 6qwt by Molmil
Sicinivirus 3Dpol RNA dependent RNA polymerase
Descriptor: Genome polyprotein
Authors:Dubankova, A, Boura, E.
Deposit date:2019-03-06
Release date:2019-10-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of kobuviral and siciniviral polymerases reveal conserved mechanism of picornaviral polymerase activation.
J.Struct.Biol., 208, 2019
6R1I
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BU of 6r1i by Molmil
Structure of porcine Aichi virus polymerase
Descriptor: Genome polyprotein
Authors:Dubankova, A, Boura, E.
Deposit date:2019-03-14
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.634 Å)
Cite:Structures of kobuviral and siciniviral polymerases reveal conserved mechanism of picornaviral polymerase activation.
J.Struct.Biol., 208, 2019
5I62
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BU of 5i62 by Molmil
Crystal structure of the insertion loop deletion mutant of the RNA-dependent RNA polymerase of a human picorbirnavirus
Descriptor: Potential RNA-dependent RNA polymerase
Authors:Collier, A.M, Guo, Y.R, Tao, Y.J.
Deposit date:2016-02-15
Release date:2016-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Initiation of RNA Polymerization and Polymerase Encapsidation by a Small dsRNA Virus.
Plos Pathog., 12, 2016
6S2L
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BU of 6s2l by Molmil
FMDV 3D polymerase crystallized in presence of (F)uridylylated VPg peptide
Descriptor: GLYCEROL, Genome polyprotein
Authors:Verdaguer, N, Ferrer-Orta, C.
Deposit date:2019-06-21
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:(F)uridylylated Peptides Linked to VPg1 of Foot-and- Mouth Disease Virus (FMDV): Design, Synthesis and X-Ray Crystallography of the Complexes with FMDV RNA-Dependent RNA Polymerase.
Molecules, 24, 2019
3SFU
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BU of 3sfu by Molmil
crystal structure of murine norovirus RNA dependent RNA polymerase in complex with ribavirin
Descriptor: 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide, GLYCEROL, MAGNESIUM ION, ...
Authors:Kim, K.H, Alam, I.
Deposit date:2011-06-14
Release date:2012-05-09
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Crystal structures of murine norovirus-1 RNA-dependent RNA polymerase in complex with 2-thiouridine or ribavirin.
Virology, 426, 2012
1KHV
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BU of 1khv by Molmil
Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Lu3+
Descriptor: LUTETIUM (III) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Ng, K.K, Cherney, M.M, Vazquez, A.L, Machin, A, Alonso, J.M, Parra, F, James, M.N.
Deposit date:2001-12-01
Release date:2002-01-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase.
J.Biol.Chem., 277, 2002
3DDK
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BU of 3ddk by Molmil
Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase
Descriptor: RNA polymerase B3 3Dpol, SODIUM ION, SULFATE ION
Authors:Campagnola, G, Weygandt, M.H, Scoggin, K.E, Peersen, O.B.
Deposit date:2008-06-05
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Coxsackievirus B3 3Dpol Highlights Functional Importance of Residue 5 in Picornaviral Polymerases
J.Virol., 82, 2008
2UUT
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BU of 2uut by Molmil
The 2.4 angstrom resolution structure of the D346G mutant of the Sapporo Virus RdRp polymerase
Descriptor: RNA-DIRECTED RNA POLYMERASE
Authors:Fullerton, S.W.B, Robel, I, Schuldt, L, Gebhardt, J, Tucker, P, Rohayem, J.
Deposit date:2007-03-07
Release date:2007-05-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The 2.4 Angstrom Resolution Structure of the D346G Mutant of the Sapporo Virus Rdrp Polymerase
To be Published
8IIC
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BU of 8iic by Molmil
Crystal structure of Israeli acute paralysis virus RNA-dependent RNA polymerase delta40 mutant (residues 41-546)
Descriptor: Polymerase polyprotein
Authors:Fang, X, Lu, G, Hou, C, Gong, P.
Deposit date:2023-02-24
Release date:2023-06-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Unusual substructure conformations observed in crystal structures of a dicistrovirus RNA-dependent RNA polymerase suggest contribution of the N-terminal extension in proper folding.
Virol Sin, 38, 2023

223790

건을2024-08-14부터공개중

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