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PDB: 318 results

8D80
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BU of 8d80 by Molmil
Cereblon~DDB1 bound to Iberdomide and Ikaros ZF1-2-3
Descriptor: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, DNA damage-binding protein 1, DNA-binding protein Ikaros, ...
Authors:Watson, E.R, Lander, G.C.
Deposit date:2022-06-07
Release date:2022-07-20
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science, 378, 2022
8DEY
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BU of 8dey by Molmil
Ternary complex structure of Cereblon-DDB1 bound to IKZF2(ZF2,3) and the molecular glue DKY709
Descriptor: (3S)-3-[5-(1-benzylpiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, DNA damage-binding protein 1, Protein cereblon, ...
Authors:Ma, X, Ornelas, E, Clifton, M.C.
Deposit date:2022-06-21
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Discovery and characterization of a selective IKZF2 glue degrader for cancer immunotherapy.
Cell Chem Biol, 30, 2023
7LPS
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BU of 7lps by Molmil
Crystal structure of DDB1-CRBN-ALV1 complex bound to Helios (IKZF2 ZF2)
Descriptor: 3-[3-[[1-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-2,5-bis(oxidanylidene)pyrrol-3-yl]amino]phenyl]-~{N}-(3-chloranyl-4-methyl-phenyl)propanamide, DNA damage-binding protein 1, Protein cereblon, ...
Authors:Nowak, R.P, Fischer, E.S.
Deposit date:2021-02-12
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.78 Å)
Cite:Acute pharmacological degradation of Helios destabilizes regulatory T cells.
Nat.Chem.Biol., 17, 2021
8U16
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BU of 8u16 by Molmil
The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-short bound to Pomalidomide
Descriptor: 1,2-ETHANEDIOL, DNA damage-binding protein 1, Protein cereblon, ...
Authors:Clifton, M.C, Ma, X, Ornelas, E.
Deposit date:2023-08-30
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon.
Sci Rep, 13, 2023
8U17
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BU of 8u17 by Molmil
The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-long bound to Pomalidomide
Descriptor: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ...
Authors:Clifton, M.C, Ma, X, Ornelas, E.
Deposit date:2023-08-30
Release date:2023-12-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon.
Sci Rep, 13, 2023
8U15
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BU of 8u15 by Molmil
The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-short bound to CC-220
Descriptor: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, DDB1, Protein cereblon, ...
Authors:Clifton, M.C, Ma, X, Ornelas, E.
Deposit date:2023-08-30
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon.
Sci Rep, 13, 2023
8TNR
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BU of 8tnr by Molmil
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Descriptor: 2-[(3S)-2,6-dioxopiperidin-3-yl]-5-(morpholin-4-yl)-1H-isoindole-1,3(2H)-dione, DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, ...
Authors:Roy Burman, S.S, Hunkeler, M, Fischer, E.S.
Deposit date:2023-08-02
Release date:2024-03-13
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Continuous evolution of compact protein degradation tags regulated by selective molecular glues.
Science, 383, 2024
8TNQ
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BU of 8tnq by Molmil
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Descriptor: 2-[(3S)-2,6-dioxopiperidin-3-yl]-5-(morpholin-4-yl)-1H-isoindole-1,3(2H)-dione, DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, ...
Authors:Roy Burman, S.S, Hunkeler, M, Fischer, E.S.
Deposit date:2023-08-02
Release date:2024-03-13
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Continuous evolution of compact protein degradation tags regulated by selective molecular glues.
Science, 383, 2024
8TNP
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BU of 8tnp by Molmil
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Descriptor: DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, Protein cereblon, ...
Authors:Roy Burman, S.S, Hunkeler, M, Fischer, E.S.
Deposit date:2023-08-02
Release date:2024-03-13
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Continuous evolution of compact protein degradation tags regulated by selective molecular glues.
Science, 383, 2024
1UN6
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BU of 1un6 by Molmil
THE CRYSTAL STRUCTURE OF A ZINC FINGER - RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION
Descriptor: 5S RIBOSOMAL RNA, MAGNESIUM ION, TRANSCRIPTION FACTOR IIIA, ...
Authors:Lu, D, Searles, M.A, Klug, A.
Deposit date:2003-09-04
Release date:2003-11-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of a Zinc-Finger-RNA Complex Reveals Two Modes of Molecular Recognition
Nature, 426, 2003
2LVU
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BU of 2lvu by Molmil
Solution structure of Miz-1 zinc finger 10
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 17
Authors:Bedard, M, Maltais, L, Beaulieu, M, Bernard, D, Lavigne, P.
Deposit date:2012-07-11
Release date:2012-07-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure note: solution structure of human Miz-1 zinc fingers 8 to 10.
J.Biomol.Nmr, 54, 2012
2LVR
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BU of 2lvr by Molmil
Solution structure of Miz-1 zinc finger 8
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 17
Authors:Bedard, M, Maltais, L, Beaulieu, M, Bernard, D, Lavigne, P.
Deposit date:2012-07-10
Release date:2012-07-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure note: solution structure of human Miz-1 zinc fingers 8 to 10.
J.Biomol.Nmr, 54, 2012
2LVT
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BU of 2lvt by Molmil
Solution structure of Miz-1 zinc finger 9
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 17
Authors:Bedard, M, Maltais, L, Beaulieu, M, Bernard, D, Lavigne, P.
Deposit date:2012-07-11
Release date:2012-07-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure note: solution structure of human Miz-1 zinc fingers 8 to 10.
J.Biomol.Nmr, 54, 2012
2M0F
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BU of 2m0f by Molmil
Solution Structure of Miz-1 zinc finger 7
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 17
Authors:Bernard, D, Bedard, M, Bilodeau, J, Lavigne, P.
Deposit date:2012-10-24
Release date:2012-11-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Structure Note: Solution Structure of Miz-1 Zinc Fingers 5 to 7
To be Published
2J7J
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BU of 2j7j by Molmil
Invariance of the zinc finger module: a comparison of the free structure with those in nucleic-acid complexes
Descriptor: SULFATE ION, TRANSCRIPTION FACTOR IIIA, ZINC ION
Authors:Lu, D, Klug, A.
Deposit date:2006-10-10
Release date:2007-10-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Invariance of the Zinc Finger Module: A Comparison of the Free Structure with Those in Nucleic-Acid Complexes.
Proteins, 67, 2007
2M0E
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BU of 2m0e by Molmil
Solution Structure of Miz-1 zinc finger 6
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 17
Authors:Bernard, D, Bedard, M, Bilodeau, J, Lavigne, P.
Deposit date:2012-10-24
Release date:2012-11-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Structure Note: Solution Structure of Miz-1 Zinc Fingers 5 to 7
To be Published
2M0D
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BU of 2m0d by Molmil
Solution Structure of Miz-1 zinc finger 5
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 17
Authors:Bernard, D, Bedard, M, Bilodeau, J, Lavigne, P.
Deposit date:2012-10-24
Release date:2012-11-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Structure Note: Structure of Miz-1 Zinc Fingers 5 to 7
To be Published
2HGH
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BU of 2hgh by Molmil
Transcription Factor IIIA zinc fingers 4-6 bound to 5S rRNA 55mer (NMR structure)
Descriptor: 55-MER, Transcription factor IIIA, ZINC ION
Authors:Lee, B.M.
Deposit date:2006-06-27
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Induced Fit and 'Lock and Key' Recognition of 5 S RNA by Zinc Fingers of Transcription Factor IIIA
J.Mol.Biol., 357, 2006

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