PDB: 182 件ウェブページステータス検索Chemie searchBIRD

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7CKV	Crystal structure of Cyanobacteriochrome GAF domain in Pr state 分子名称: MAGNESIUM ION, PHYCOCYANOBILIN, RcaE 著者 Nagae, T, Koizumi, T, Hirose, Y, Mishima, M. 登録日 2020-07-19 公開日 2021-05-05 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE. Proc.Natl.Acad.Sci.USA, 118, 2021
1YKD	Crystal Structure of the Tandem GAF Domains from a Cyanobacterial Adenylyl Cyclase: Novel Modes of Ligand-Binding and Dimerization 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, adenylate cyclase 著者 Martinez, S.E, Bruder, S, Schultz, A, Zheng, N, Schultz, J.E, Beavo, J.A, Linder, J.U. 登録日 2005-01-17 公開日 2005-02-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of the tandem GAF domains from a cyanobacterial adenylyl cyclase: Modes of ligand binding and dimerization Proc.Natl.Acad.Sci.USA, 102, 2005
1F5M	STRUCTURE OF THE GAF DOMAIN 分子名称: BROMIDE ION, GAF 著者 Ho, Y.S, Burden, L.M, Hurley, J.H. 登録日 2000-06-15 公開日 2000-11-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor. EMBO J., 19, 2000
2KLI	Structural Basis for the Photoconversion of A Phytochrome to the Activated FAR-RED LIGHT-ABSORBING Form 分子名称: PHYCOCYANOBILIN, Sensor protein 著者 Cornilescu, C.C, Cornilescu, G, Ulijasz, A.T, Zhang, J, Rivera, M, Vierstra, R.D, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG) 登録日 2009-07-03 公開日 2009-11-03 最終更新日 2022-03-16 実験手法 SOLUTION NMR 主引用文献 Structural basis for the photoconversion of a phytochrome to the activated Pfr form Nature, 463, 2010
3CI6	Crystal structure of the GAF domain from Acinetobacter phosphoenolpyruvate-protein phosphotransferase 分子名称: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Cuff, M.E, Shackelford, G, Kim, Y, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-03-10 公開日 2008-05-13 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structure of the GAF domain from Acinetobacter phosphoenolpyruvate-protein phosphotransferase. TO BE PUBLISHED
2KOI	Refined solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state 分子名称: PHYCOCYANOBILIN, Sensor protein 著者 Cornilescu, C.C, Cornilescu, G, Ulijasz, A.T, Vierstra, R.D, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG) 登録日 2009-09-22 公開日 2009-11-03 最終更新日 2011-07-13 実験手法 SOLUTION NMR 主引用文献 Structural basis for the photoconversion of a phytochrome to the activated Pfr form Nature, 463, 2010
3DBA	Crystal structure of the cGMP-bound GAF a domain from the photoreceptor phosphodiesterase 6C 分子名称: Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha', GLYCEROL, GUANOSINE-3',5'-MONOPHOSPHATE 著者 Martinez, S.E, Heikaus, C.C, Klevit, R.E, Beavo, J.A. 登録日 2008-05-30 公開日 2008-07-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 The Structure of the GAF A Domain from Phosphodiesterase 6C Reveals Determinants of cGMP Binding, a Conserved Binding Surface, and a Large cGMP-dependent Conformational Change. J.Biol.Chem., 283, 2008
2K31	Solution Structure of cGMP-binding GAF domain of Phosphodiesterase 5 分子名称: GUANOSINE-3',5'-MONOPHOSPHATE, Phosphodiesterase 5A, cGMP-specific 著者 Heikaus, C.C, Stout, J.R, Sekharan, M.R, Eakin, C.M, Rajagopal, P, Brzovic, P.S, Beavo, J.A, Klevit, R.E. 登録日 2008-04-16 公開日 2008-06-03 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Solution Structure of the cGMP Binding GAF Domain from Phosphodiesterase 5: Insights into Nucleotide Selectivity, Dimerization, and cGMP-Dependent Conformational Change. J.Biol.Chem., 283, 2008
2K2N	Solution structure of a cyanobacterial phytochrome GAF domain in the red light-absorbing ground state 分子名称: PHYCOCYANOBILIN, Sensor protein 著者 Cornilescu, C.C, Cornilescu, G, Ulijasz, A.T, Vierstra, R.D, Markley, J.L. 登録日 2008-04-04 公開日 2008-09-23 最終更新日 2022-03-16 実験手法 SOLUTION NMR 主引用文献 Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. J.Mol.Biol., 383, 2008
6OZB	Crystal structure of the phycoerythrobilin-bound GAF domain from a cyanobacterial phytochrome 分子名称: PHYCOERYTHROBILIN, Two-component sensor histidine kinase 著者 Heewhan, S, Xiaoli, Z, Yafang, S, Zhong, R, Wolfgang, G, Kai, H.Z, Xiaojing, Y. 登録日 2019-05-15 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome. Proc.Natl.Acad.Sci.USA, 117, 2020
6P58	Dark and Steady State-Illuminated Crystal Structure of Cyanobacteriochrome Receptor PixJ at 150K 分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Methyl-accepting chemotaxis protein, ... 著者 Clinger, J.A, Miller, M.D, Buirgie, E.S, Vierstra, R.D, Phillips Jr, G.N. 登録日 2019-05-29 公開日 2019-12-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.499 Å) 主引用文献 Photoreversible interconversion of a phytochrome photosensory module in the crystalline state. Proc.Natl.Acad.Sci.USA, 117, 2020
6OZA	Crystal structure of the phycocyanobilin-bound GAF domain from a cyanobacterial phytochrome 分子名称: PHYCOCYANOBILIN, Two-component sensor histidine kinase 著者 Heewhan, S, Xiaoli, Z, Yafang, S, Zhong, R, Wolfgang, G, Kai, H.Z, Xiaojing, Y. 登録日 2019-05-15 公開日 2020-05-20 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (3.002 Å) 主引用文献 The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome. Proc.Natl.Acad.Sci.USA, 117, 2020
5W10	Lcd1 GAF domain in complex with cAMP ligand 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, cGMP-specific phosphodiesterase 著者 Guzzo, C.R, Maciel, N.K, Barbosa, A.S, Farah, C.S. 登録日 2017-06-01 公開日 2017-06-28 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural and Enzymatic Characterization of a cAMP-Dependent Diguanylate Cyclase from Pathogenic Leptospira Species. J. Mol. Biol., 429, 2017
5HL6	Crystal Structure of a Putative GAF sensor protein from Burkholderia vietnamiensis 分子名称: 1,2-ETHANEDIOL, Putative GAF sensor protein 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-01-14 公開日 2016-01-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8499 Å) 主引用文献 Crystal Structure of a Putative GAF sensor protein from Burkholderia vietnamiensis to be published
5DFY	Structure of the parental state of GAF3 from Slr1393 of Synechocystis sp. PCC6803 (in vitro assembled protein/chromophore) 分子名称: Histidine kinase, PHYCOCYANOBILIN 著者 Xu, X.-L, Zhao, K.-H, Gaertner, W, Hoeppner, A. 登録日 2015-08-27 公開日 2016-09-14 最終更新日 2020-01-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural elements regulating the photochromicity in a cyanobacteriochrome Proc.Natl.Acad.Sci.USA, 2020
5DFX	Structure of the parental state of GAF3 from Slr1393 of Synechocystis sp. PCC6803 (in vivo assembled protein/chromophore) 分子名称: Histidine kinase, PHYCOCYANOBILIN 著者 Xu, X.-L, Zhao, K.-H, Gaertner, W, Hoeppner, A. 登録日 2015-08-27 公開日 2016-09-14 最終更新日 2020-01-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural elements regulating the photochromicity in a cyanobacteriochrome Proc.Natl.Acad.Sci.USA, 2020
4BWI	Structure of the phytochrome Cph2 from Synechocystis sp. PCC6803 分子名称: FORMIC ACID, GLUTAMIC ACID, GLYCEROL, ... 著者 Anders, K, Angerer, V, Widany, G.D, Mroginski, M.A, von Stetten, D, Essen, L.-O. 登録日 2013-07-03 公開日 2013-10-30 最終更新日 2019-05-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of the Cyanobacterial Phytochrome 2 Photosensor Implies a Tryptophan Switch for Phytochrome Signaling. J.Biol.Chem., 288, 2013
2Y79	STRUCTURE OF THE FIRST GAF DOMAIN E87A MUTANT OF MYCOBACTERIUM TUBERCULOSIS DOSS 分子名称: CALCIUM ION, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Cho, H.Y, Cho, H.J, Kang, B.S. 登録日 2011-01-30 公開日 2011-02-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Blockage of the Channel to Heme by the E87 Side Chain in the Gaf Domain of Mycobacterium Tuberculosis Doss Confers the Unique Sensitivity of Doss to Oxygen. FEBS Lett., 585, 2011
2XSS	Crystal structure of GAFb from the human phosphodiesterase 5 分子名称: CGMP-SPECIFIC 3', 5'-CYCLIC PHOSPHODIESTERASE 著者 Schlicker, C, Russwurm, M, Steegborn, C. 登録日 2010-09-30 公開日 2011-05-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of the Gaf-B Domain from Human Phosphodiesterase 5. Proteins, 79, 2011
2Y8H	STRUCTURE OF THE FIRST GAF DOMAIN E87G MUTANT OF MYCOBACTERIUM TUBERCULOSIS DOSS 分子名称: CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, TWO COMPONENT SENSOR HISTIDINE KINASE DEVS 著者 Cho, H.Y, Cho, H.J, Kang, B.S. 登録日 2011-02-07 公開日 2011-02-23 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Blockage of the Channel to Heme by the E87 Side Chain in the Gaf Domain of Mycobacterium Tuberculosis Doss Confers the Unique Sensitivity of Doss to Oxygen. FEBS Lett., 585, 2011
8W26	X-ray crystal structure of the GAF-PHY domains of SyB-Cph1 分子名称: 1,2-ETHANEDIOL, ACETATE ION, PHYCOCYANOBILIN, ... 著者 Burgie, E.S, Vierstra, R.D. 登録日 2024-02-20 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of the Photosensory Module from a PAS-Less Cyanobacterial Phytochrome Reveals a Hybrid Activated Conformation in the Dark-Adapted Pr State To Be Published
3KO6	Crystal structure of yeast free methionine-R-sulfoxide reductase Ykg9 in complex with the substrate 分子名称: METHIONINE SULFOXIDE, UPF0067 GAF domain-containing protein YKL069W 著者 Ma, X.-X, Guo, P.-C, Chen, Y, Zhou, C.-Z. 登録日 2009-11-13 公開日 2010-11-17 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of yeast free methionine-R-sulfoxide reductase Ykg9 in complex with the substrate To be Published
3P01	Crystal structure of two-component response regulator from Nostoc sp. PCC 7120 分子名称: Two-component response regulator 著者 Chang, C, Mack, J, Feldman, B, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2010-09-27 公開日 2010-10-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal structure of two-component response regulator from Nostoc sp. PCC 7120 TO BE PUBLISHED
4G3K	Crystal structure of a. aeolicus nlh1 gaf domain in an inactive state 分子名称: Transcriptional regulator nlh1 著者 Wemmer, D.E, Batchelor, J.D, Wang, A, Lee, P, Doucleff, M. 登録日 2012-07-14 公開日 2013-05-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural mechanism of GAF-regulated delta(54) activators from Aquifex aeolicus J.Mol.Biol., 425, 2013
4G3W	Crystal structure of a. aeolicus nlh1 gaf domain in an inactive state 分子名称: Transcriptional regulator nlh1 著者 Batchelor, J.D, Wang, A, Lee, P, Doucleff, M, Wemmer, D.E. 登録日 2012-07-15 公開日 2013-05-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural mechanism of GAF-regulated delta(54) activators from Aquifex aeolicus J.Mol.Biol., 425, 2013

 

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