PDB: 13252 件ウェブページステータス検索Chemie searchBIRD

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6D3P	Crystal structure of an exoribonuclease-resistant RNA from Sweet clover necrotic mosaic virus (SCNMV) 分子名称: IRIDIUM HEXAMMINE ION, RNA (45-MER) 著者 Steckelberg, A.-L, Akiyama, B.M, Costantino, D.A, Sit, T.L, Nix, J.C, Kieft, J.S. 登録日 2018-04-16 公開日 2018-06-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1F84	SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID 分子名称: HCV-1B IRES RNA DOMAIN IIID 著者 Lukavsky, P.J, Otto, G.A, Lancaster, A.M, Sarnow, P, Puglisi, J.D. 登録日 2000-06-28 公開日 2000-11-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat.Struct.Biol., 7, 2000
2QE5	Structure of HCV NS5B Bound to an Anthranilic Acid Inhibitor 分子名称: 2-{[(4-CHLOROPHENOXY)ACETYL]AMINO}BENZOIC ACID, RNA-directed RNA polymerase 著者 Chopra, R, Svenson, K, Bard, J. 登録日 2007-06-22 公開日 2007-10-02 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Identification of Anthranilic Acid Derivatives as a Novel Class of Allosteric Inhibitors of Hepatitis C NS5B Polymerase J.Med.Chem., 50, 2007
2QE2	Structure of HCV NS5B Bound to an Anthranilic Acid Inhibitor 分子名称: 2-{[N-(2-ACETYL-5-CHLORO-4-FLUOROPHENYL)GLYCYL]AMINO}BENZOIC ACID, RNA-directed RNA polymerase 著者 Chopra, R, Svenson, K, Bard, J. 登録日 2007-06-22 公開日 2007-10-02 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Identification of Anthranilic Acid Derivatives as a Novel Class of Allosteric Inhibitors of Hepatitis C NS5B Polymerase J.Med.Chem., 50, 2007
1HC8	CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX 分子名称: 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN, MAGNESIUM ION, OSMIUM ION, ... 著者 Conn, G.L, Draper, D.E, Lattman, E.E, Gittis, A.G. 登録日 2001-04-27 公開日 2002-05-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A Compact RNA Tertiary Structure Contains a Buried Backbone-K+ Complex J.Mol.Biol., 318, 2002
2PCW	Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA 分子名称: U65 box H/ACA snoRNA, rRNA substrate of U65 box H/ACA snoRNA 著者 Jin, H, Loria, J.P, Moore, P.B. 登録日 2007-03-30 公開日 2007-05-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA. Mol.Cell, 26, 2007
1F85	SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIIE 分子名称: HCV-1B IRES RNA DOMAIN IIIE 著者 Lukavsky, P.J, Otto, G.A, Lancaster, A.M, Sarnow, P, Puglisi, J.D. 登録日 2000-06-28 公開日 2000-11-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat.Struct.Biol., 7, 2000
2PCV	Solution Structure of an rRNA Substrate Bound to the Pseudouridylation Pocket of a Box H/ACA snoRNA 分子名称: U65 Box H/ACA snoRNA 著者 Jin, H, Loria, J.P, Moore, P.B. 登録日 2007-03-30 公開日 2007-05-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an rRNA substrate bound to the pseudouridylation pocket of a box H/ACA snoRNA. Mol.Cell, 26, 2007
2GTT	Crystal structure of the rabies virus nucleoprotein-RNA complex 分子名称: Nucleoprotein, PHOSPHATE ION, RNA (99-MER) 著者 Albertini, A.A.V, Wernimont, A.K, Muziol, T, Ravelli, R.B.G, Weissenhorn, W, Ruigrok, R.W.H. 登録日 2006-04-28 公開日 2006-09-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.49 Å) 主引用文献 Crystal Structure of the Rabies Virus Nucleoprotein-RNA Complex Science, 313, 2006
6D12	Crystal structure of C-terminal xRRM domain of human Larp7 bound to 7SK stem-loop 4 RNA 分子名称: La-related protein 7, human 7SK RNA stem-loop 4 著者 Eichhorn, C.D, Cascio, D, Sawaya, M.R, Feigon, J. 登録日 2018-04-11 公開日 2018-06-27 最終更新日 2020-01-15 実験手法 X-RAY DIFFRACTION (2.205 Å) 主引用文献 Structural basis for recognition of human 7SK long noncoding RNA by the La-related protein Larp7. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3MMY	Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Nuclear pore complex protein Nup98, mRNA export factor 著者 Hoelz, A, Ren, Y. 登録日 2010-04-20 公開日 2010-06-02 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1. Proc.Natl.Acad.Sci.USA, 107, 2010
4I9L	Crystal structure of the D714A mutant of RB69 DNA polymerase 分子名称: CHLORIDE ION, DNA polymerase, GUANOSINE, ... 著者 Jacewicz, A, Trzemecka, A, Guja, K.E, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. 登録日 2012-12-05 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
2JDQ	C-terminal domain of influenza A virus polymerase PB2 subunit in complex with human importin alpha5 分子名称: IMPORTIN ALPHA-1 SUBUNIT, POLYMERASE BASIC PROTEIN 2 著者 Tarendeau, F, Guilligay, D, Mas, P, Boulo, S, Baudin, F, Ruigrok, R.W.H, Hart, D.J, Cusack, S. 登録日 2007-01-11 公開日 2007-02-27 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure and Nuclear Import Function of the C- Terminal Domain of Influenza Virus Polymerase Pb2 Subunit Nat.Struct.Mol.Biol., 14, 2007
2FEY	The structure of stem loop IV of Tetrahymena telomerase RNA 分子名称: stem-loop IV of Tetrahymena telomerase RNA 著者 Chen, Y, Fender, J, Legassie, J.D, Jarstfer, M.B, Bryan, T.M, Varani, G. 登録日 2005-12-16 公開日 2006-06-27 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of stem-loop IV of Tetrahymena telomerase RNA. Embo J., 25, 2006
3IN5	Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*C*CP*TP*AP*(8OG)P*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*(DOC))-3'), ... 著者 Silverstein, T.D, Vasquez-Del Carpio, R, Aggarwal, A.K. 登録日 2009-08-11 公開日 2009-09-08 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion PLOS ONE, 4, 2009
1IDV	NMR structure of HCV ires RNA domain IIIC 分子名称: HEPATITIS C IRES RNA DOMAIN IIIC 著者 Kaluarachchi, K, Rijnbrand, R, Lemon, S.M, Gorenstein, D.G. 登録日 2001-04-05 公開日 2001-10-05 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Mutational and structural analysis of stem-loop IIIC of the hepatitis C virus and GB virus B internal ribosome entry sites J.Mol.Biol., 343, 2004
1QA6	CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX 分子名称: 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN, MAGNESIUM ION, OSMIUM ION, ... 著者 Conn, G.L, Draper, D.E, Lattman, E.E, Gittis, A.G. 登録日 1999-04-15 公開日 1999-05-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of a conserved ribosomal protein-RNA complex. Science, 284, 1999
4Q8E	Human DNA polymerase eta inserting dCMPNPP opposite a phenanthriplatin adducted G 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3', 5'-D(*CP*AP*TP*GP*CP*TP*CP*AP*CP*AP*CP*T)-3', ... 著者 Gregory, M.T, Yang, W. 登録日 2014-04-26 公開日 2014-07-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.549 Å) 主引用文献 Structural and mechanistic studies of polymerase eta bypass of phenanthriplatin DNA damage. Proc.Natl.Acad.Sci.USA, 111, 2014
4Q8F	Human DNA polymerase eta extending primer immediately after a phenanthriplatin adducted G 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, 5'-D(*AP*GP*TP*GP*TP*GP*AP*C)-3', 5'-D(*CP*AP*TP*CP*GP*TP*CP*AP*CP*AP*CP*T)-3', ... 著者 Gregory, M.T, Yang, W. 登録日 2014-04-26 公開日 2014-07-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.797 Å) 主引用文献 Structural and mechanistic studies of polymerase eta bypass of phenanthriplatin DNA damage. Proc.Natl.Acad.Sci.USA, 111, 2014
3V7E	Crystal structure of YbxF bound to the SAM-I riboswitch aptamer 分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, Ribosome-associated protein L7Ae-like, ... 著者 Baird, N.J, Zhang, J, Hamma, T, Ferre-D'Amare, A.R. 登録日 2011-12-21 公開日 2012-03-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops. Rna, 18, 2012
2A9X	TAR RNA recognition by a cyclic peptidomimetic of Tat protein 分子名称: BIV TAR RNA, BIV-2 cyclic peptide 著者 Leeper, T.C, Athanassiou, Z, Dias, R.L, Robinson, J.A, Varani, G. 登録日 2005-07-12 公開日 2005-11-01 最終更新日 2022-03-09 実験手法 SOLUTION NMR 主引用文献 TAR RNA recognition by a cyclic peptidomimetic of Tat protein. Biochemistry, 44, 2005
4AIL	Crystal Structure of an Evolved Replicating DNA Polymerase 分子名称: 5'-D(*AP*CP*GP*GP*GP*TP*AP*AP*GP*CP*AP)-3', 5'-D(*TP*GP*CP*TP*TP*AP*CP*DOCP)-3', DNA POLYMERASE 著者 Wynne, S.A, Holliger, P, Leslie, A.G.W. 登録日 2012-02-10 公開日 2012-03-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structures of an Apo and a Binary Complex of an Evolved Archeal B Family DNA Polymerase Capable of Synthesising Highly Cy-Dye Labelled DNA. Plos One, 8, 2013
283D	A CURVED RNA HELIX INCORPORATING AN INTERNAL LOOP WITH G-A AND A-A NON-WATSON-CRICK BASE PAIRING 分子名称: MANGANESE (II) ION, RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)-3') 著者 Baeyens, K.J, De Bondt, H.L, Pardi, A, Holbrook, S.R. 登録日 1996-09-03 公開日 1996-09-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing. Proc.Natl.Acad.Sci.USA, 93, 1996
4KTQ	BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA 分子名称: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), PROTEIN (LARGE FRAGMENT OF DNA POLYMERASE I) 著者 Li, Y, Waksman, G. 登録日 1998-09-09 公開日 1999-01-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J., 17, 1998
4AHC	Crystal Structure of an Evolved Replicating DNA Polymerase 分子名称: DNA POLYMERASE, GLYCEROL 著者 Wynne, S.A, Holliger, P, Leslie, A.G.W. 登録日 2012-02-06 公開日 2012-03-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of an Apo and a Binary Complex of an Evolved Archeal B Family DNA Polymerase Capable of Synthesising Highly Cy-Dye Labelled DNA. Plos One, 8, 2013

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