PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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7AP4	Thermus thermophilus Aspartyl-tRNA Synthetase in Complex with Compound AspS7HMDDA 分子名称: (3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid, Aspartate--tRNA(Asp) ligase 著者 De Graef, S, Pang, L, Strelkov, S.V, Weeks, S.D. 登録日 2020-10-15 公開日 2020-12-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Synthesis and Biological Evaluation of 1,3-Dideazapurine-Like 7-Amino-5-Hydroxymethyl-Benzimidazole Ribonucleoside Analogues as Aminoacyl-tRNA Synthetase Inhibitors. Molecules, 25, 2020
7AP2	Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Compound LeuS7HMDDA 分子名称: 1,2-ETHANEDIOL, Leucine--tRNA ligase, MAGNESIUM ION, ... 著者 Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D. 登録日 2020-10-15 公開日 2020-10-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Synthesis and Biological Evaluation of 1,3-Dideazapurine-Like 7-Amino-5-Hydroxymethyl-Benzimidazole Ribonucleoside Analogues as Aminoacyl-tRNA Synthetase Inhibitors. Molecules, 25, 2020
7AP3	Crystal structure of E. coli tyrosyl-tRNA synthetase in complex with TyrS7HMDDA 分子名称: SODIUM ION, Tyrosine--tRNA ligase, [(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-(4-hydroxyphenyl)propanoyl]sulfamate 著者 De Graef, S, Pang, L, Strelkov, S.V, Weeks, S.D. 登録日 2020-10-15 公開日 2020-10-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Synthesis and Biological Evaluation of 1,3-Dideazapurine-Like 7-Amino-5-Hydroxymethyl-Benzimidazole Ribonucleoside Analogues as Aminoacyl-tRNA Synthetase Inhibitors. Molecules, 25, 2020
7AP1	Klebsiella pneumoniae Seryl-tRNA synthetase in Complex with Compound SerS7HMDDA 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Serine-tRNA ligase, ... 著者 Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D. 登録日 2020-10-15 公開日 2020-11-11 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Synthesis and Biological Evaluation of 1,3-Dideazapurine-Like 7-Amino-5-Hydroxymethyl-Benzimidazole Ribonucleoside Analogues as Aminoacyl-tRNA Synthetase Inhibitors. Molecules, 25, 2020
5LOS	Piriformospora indica PIIN_05872 分子名称: PIIN_05872, SULFATE ION, ZINC ION 著者 Hartmann, M.D, Albrecht, R, Martin, J, Lupas, A.N. 登録日 2016-08-09 公開日 2018-05-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A secreted fungal histidine- and alanine-rich protein regulates metal ion homeostasis and oxidative stress. New Phytol., 227, 2020
7TSR	Room temperature rsEospa Cis-state structure at pH 8.4 分子名称: Cis-state rsEospa 著者 Baxter, J.M, van Thor, J.J. 登録日 2022-01-31 公開日 2022-11-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Observation of Cation Chromophore Photoisomerization of a Fluorescent Protein Using Millisecond Synchrotron Serial Crystallography and Infrared Vibrational and Visible Spectroscopy. J.Phys.Chem.B, 126, 2022
7TSU	Room temperature rsEospa Cis-state structure at pH 5.5 分子名称: Cis-state rsEospa 著者 Baxter, J.M, van Thor, J.J. 登録日 2022-01-31 公開日 2022-12-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Observation of Cation Chromophore Photoisomerization of a Fluorescent Protein Using Millisecond Synchrotron Serial Crystallography and Infrared Vibrational and Visible Spectroscopy. J.Phys.Chem.B, 126, 2022
7TSS	Room temperature rsEospa Trans-state structure at pH 8.4 分子名称: Trans-state rsEospa 著者 Baxter, J.M, van Thor, J.J. 登録日 2022-01-31 公開日 2022-12-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Observation of Cation Chromophore Photoisomerization of a Fluorescent Protein Using Millisecond Synchrotron Serial Crystallography and Infrared Vibrational and Visible Spectroscopy. J.Phys.Chem.B, 126, 2022
2OG5	Crystal structure of asparagine oxygenase (AsnO) 分子名称: ACETIC ACID, Putative oxygenase, SODIUM ION 著者 Essen, L.O, Strieker, M. 登録日 2007-01-05 公開日 2007-03-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Mechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide. Acs Chem.Biol., 2, 2007
4IQX	Mutant P44S P169S M296I of Foot-and-mouth disease Virus RNA-dependent RNA polymerase 分子名称: 3D polymerase, RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*C)-3') 著者 Ferrer-Orta, C, Verdaguer, N, Agudo, R, Perez-Luque, R. 登録日 2013-01-14 公開日 2013-02-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape. Plos Pathog., 6, 2010
7TSV	Room temperature rsEospa Trans-state structure at pH 5.5 分子名称: Trans-state rsEospa 著者 Baxter, J.M, van Thor, J.J. 登録日 2022-01-31 公開日 2023-01-11 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Observation of Cation Chromophore Photoisomerization of a Fluorescent Protein Using Millisecond Synchrotron Serial Crystallography and Infrared Vibrational and Visible Spectroscopy. J.Phys.Chem.B, 126, 2022
2BND	The structure of E. coli UMP kinase in complex with UDP 分子名称: GLYCEROL, PYROPHOSPHATE 2-, URIDINE-5'-DIPHOSPHATE, ... 著者 Briozzo, P, Evrin, C, Meyer, P, Assairi, L, Joly, N, Barzu, O, Gilles, A.M. 登録日 2005-03-23 公開日 2005-04-27 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation. J.Biol.Chem., 280, 2005
6QW6	Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ... 著者 Charenton, C, Wilkinson, M.E, Nagai, K. 登録日 2019-03-05 公開日 2019-04-17 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Mechanism of 5' splice site transfer for human spliceosome activation. Science, 364, 2019
3MHF	Tagatose-1,6-bisphosphate aldolase from Streptococcus pyogenes 分子名称: CALCIUM ION, Tagatose 1,6-diphosphate aldolase 2 著者 LowKam, C. 登録日 2010-04-07 公開日 2010-04-28 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Structure of a class I tagatose-1,6-bisphosphate aldolase: investigation into an apparent loss of stereospecificity. J.Biol.Chem., 285, 2010
1PB1	A four location model to explain the stereospecificity of proteins. 分子名称: GLYCEROL, ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], ... 著者 Mesecar, A.D, Koshland Jr, D.E. 登録日 2003-05-14 公開日 2003-06-17 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural Biology: A New Model for Protein Stereospecificity. Nature, 403, 2000
3KD6	Crystal Structure of Nucleoside Kinase from Chlorobium tepidum in Complex with AMP 分子名称: ADENOSINE MONOPHOSPHATE, Carbohydrate kinase, PfkB family, ... 著者 Satyanarayana, L, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2009-10-22 公開日 2009-11-03 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal Structure of Nucleoside Kinase from Chlorobium tepidum in Complex with AMP To be Published
6J6H	Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom 分子名称: ACT1 pre-mRNA, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ... 著者 Wan, R, Bai, R, Yan, C, Lei, J, Shi, Y. 登録日 2019-01-15 公開日 2019-04-24 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching. Cell, 177, 2019
6ESF	Nucleosome : Class 1 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
2BNE	The structure of E. coli UMP kinase in complex with UMP 分子名称: GLYCEROL, URIDINE-5'-MONOPHOSPHATE, URIDYLATE KINASE 著者 Briozzo, P, Evrin, C, Meyer, P, Assairi, L, Joly, N, Barzu, O, Gilles, A.M. 登録日 2005-03-23 公開日 2005-04-25 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation. J.Biol.Chem., 280, 2005
6J6Q	Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom 分子名称: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION, ... 著者 Wan, R, Bai, R, Yan, C, Lei, J, Shi, Y. 登録日 2019-01-15 公開日 2019-04-24 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching. Cell, 177, 2019
5T1F	Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala 分子名称: ACETIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Uncharacterized protein 著者 Yoshida, H, Shimasaki, T, Kamitori, S, Sode, K. 登録日 2016-08-19 公開日 2017-06-28 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction Sci Rep, 7, 2017
6J6N	Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom 分子名称: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION, ... 著者 Wan, R, Bai, R, Yan, C, Lei, J, Shi, Y. 登録日 2019-01-15 公開日 2019-04-24 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.86 Å) 主引用文献 Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching. Cell, 177, 2019
5T1E	Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase 分子名称: ACETIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Uncharacterized protein 著者 Yoshida, H, Shimasaki, T, Kamitori, S, Sode, K. 登録日 2016-08-19 公開日 2017-06-28 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction Sci Rep, 7, 2017
3NL0	Mutant P44S M296I of Foot-and-mouth disease Virus RNA-dependent RNA polymerase 分子名称: 3D polymerase, 5'-R(*G*GP*GP*CP*CP*C)-3', 5'-R(P*UP*GP*GP*GP*CP*CP*C)-3', ... 著者 Agudo, R, Ferrer-Orta, C, Arias, A, Perez-Luque, R, Verdaguer, N, Domingo, E. 登録日 2010-06-21 公開日 2011-07-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape. Plos Pathog., 6, 2010
3MNN	A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core 分子名称: 1,3,5-triaza-7-phosphatricyclo[3.3.1.1~3,7~]decane, 1-methyl-4-(1-methylethyl)benzene, DNA (145-MER), ... 著者 Ong, M.S, Davey, C.A. 登録日 2010-04-22 公開日 2011-04-06 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A ruthenium antimetastasis agent forms specific histone protein adducts in the nucleosome core Chemistry, 17, 2011

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