PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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2NX5	Crystal structure of ELS4 TCR bound to HLA-B*3501 presenting EBV peptide EPLPQGQLTAY at 1.7A 分子名称: Beta-2-microglobulin, EBV peptide, EPLPQGQLTAY, ... 著者 Tynan, F.E, Reid, H.H, Rossjohn, J. 登録日 2006-11-16 公開日 2007-02-27 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A T cell receptor flattens a bulged antigenic peptide presented by a major histocompatibility complex class I molecule Nat.Immunol., 8, 2007
4Y4O	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Polikanov, Y.S, Melnikov, S.V, Soll, D, Steitz, T.A. 登録日 2015-02-10 公開日 2015-03-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly. Nat.Struct.Mol.Biol., 22, 2015
6Q2X	TEAD4 (216-434) COMPLEXED WITH YAP PEPTIDE (60-100) AND MYRISTOATE (COVALENTLY BOUND) AT 2.1A (P41212 CRYSTAL FORM) 分子名称: GLYCEROL, MYRISTIC ACID, Transcriptional coactivator YAP1, ... 著者 Kallen, J. 登録日 2018-12-03 公開日 2019-07-03 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure-based design of potent linear peptide inhibitors of the YAP-TEAD protein-protein interaction derived from the YAP omega-loop sequence. Bioorg.Med.Chem.Lett., 29, 2019
2O6X	Crystal Structure of ProCathepsin L1 from Fasciola hepatica 分子名称: Secreted cathepsin L 1 著者 Brinen, L.S, Dalton, J.P, Geiger, S, Marion, R, Stack, C.M. 登録日 2006-12-08 公開日 2007-12-18 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural and functional relationships in the virulence-associated cathepsin L proteases of the parasitic liver fluke, Fasciola hepatica. J.Biol.Chem., 283, 2008
6JNF	Cryo-EM structure of the translocator of the outer mitochondrial membrane 分子名称: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate, Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, ... 著者 Araiso, Y, Tsutsumi, A, Suzuki, J, Yunoki, K, Kawano, S, Kikkawa, M, Endo, T. 登録日 2019-03-14 公開日 2019-10-16 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.81 Å) 主引用文献 Structure of the mitochondrial import gate reveals distinct preprotein paths. Nature, 575, 2019
7U02	Structure of the C. crescentus DriD C-domain bound to ssDNA 分子名称: DNA (5'-D(P*AP*CP*G)-3'), SULFATE ION, WYL domain-containing protein 著者 Schumacher, M.A. 登録日 2022-02-17 公開日 2022-06-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 ssDNA is an allosteric regulator of the C. crescentus SOS-independent DNA damage response transcription activator, DriD. Genes Dev., 36, 2022
7NYX	Cryo-EM structure of the MukBEF-MatP-DNA monomer (closed conformation) 分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
6Q8D	Structure of Fucosylated D-antimicrobial peptide SB15 in complex with the Fucose-binding lectin PA-IIL at 1.630 Angstrom resolution 分子名称: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin, ... 著者 Baeriswyl, S, Stocker, A, Reymond, J.-L. 登録日 2018-12-14 公開日 2019-03-20 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 X-ray Crystal Structures of Short Antimicrobial Peptides as Pseudomonas aeruginosa Lectin B Complexes. Acs Chem.Biol., 14, 2019
7NYY	Cryo-EM structure of the MukBEF monomer 分子名称: 4'-PHOSPHOPANTETHEINE, Acyl carrier protein, Chromosome partition protein MukB, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
2NWX	Crystal structure of GltPh in complex with L-aspartate and sodium ions 分子名称: 425aa long hypothetical proton glutamate symport protein, ASPARTIC ACID, PALMITIC ACID, ... 著者 Gouaux, E, Boudker, O, Ryan, R, Yernool, D, Shimamoto, K. 登録日 2006-11-16 公開日 2007-02-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.29 Å) 主引用文献 Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter. Nature, 445, 2007
7NZ4	Cryo-EM structure of the MukBEF dimer 分子名称: 4'-PHOSPHOPANTETHEINE, Acyl carrier protein, Chromosome partition protein MukB, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (13 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
4Y91	Crystal Structure of a Thermotoga maritima Hfq homolog 分子名称: RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), RNA-binding protein Hfq 著者 Randolph, P.S, Patterson, J, Mura, C. 登録日 2015-02-16 公開日 2016-03-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.656 Å) 主引用文献 Crystal Structure of a Thermotoga maritima Hfq homolog To be published
2NYP	Structure of beta-lactamase II from Bacillus cereus. R121H, C221D doble mutant with two zinc ions. 分子名称: Beta-lactamase II, ZINC ION 著者 Medrano Martin, F.J, Vila, A.J, Gonzalez, J.M. 登録日 2006-11-21 公開日 2007-05-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 The Zn2 position in metallo-beta-lactamases is critical for activity: a study on chimeric metal sites on a conserved protein scaffold. J.Mol.Biol., 373, 2007
2NZF	Structure of beta-lactamase II from Bacillus cereus. R121H, C221S double mutant. Space group C2. 分子名称: Beta-lactamase II, ZINC ION 著者 Medrano Martin, F.J, Vila, A.J, Gonzalez, J.M. 登録日 2006-11-23 公開日 2007-05-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 The Zn2 position in metallo-beta-lactamases is critical for activity: a study on chimeric metal sites on a conserved protein scaffold. J.Mol.Biol., 373, 2007
7NYW	Cryo-EM structure of the MukBEF-MatP-DNA head module 分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
2O0C	Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to NO 分子名称: Alr2278 protein, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE 著者 Ma, X, van den Akker, F. 登録日 2006-11-27 公開日 2007-01-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 NO and CO differentially activate soluble guanylyl cyclase via a heme pivot-bend mechanism. Embo J., 26, 2007
7NWG	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. 分子名称: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S ribosomal protein S10, ... 著者 Powers, K.T, Yadav, S.K.N, Bufton, J.C, Schaffitzel, C. 登録日 2021-03-16 公開日 2021-07-07 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA. Nucleic Acids Res., 49, 2021
7TZV	Structure of DriD C-domain bound to 9mer ssDNA 分子名称: DNA (5'-D(*TP*AP*GP*TP*CP*TP*AP*CP*T)-3'), WYL domain-containing protein 著者 Schumacher, M.A, Laub, M. 登録日 2022-02-16 公開日 2022-06-01 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 ssDNA is an allosteric regulator of the C. crescentus SOS-independent DNA damage response transcription activator, DriD. Genes Dev., 36, 2022
7NYZ	Cryo-EM structure of the MukBEF-MatP-DNA monomer (partially open conformation) 分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (6.5 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
2O6D	Structure of native rTp34 from Treponema pallidum 分子名称: 1,2-ETHANEDIOL, 34 kDa membrane antigen, CHLORIDE ION, ... 著者 Machius, M, Brautigam, C.A, Deka, R.K, Tomchick, D.R, Lumpkins, S.B, Norgard, M.V. 登録日 2006-12-07 公開日 2006-12-26 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Crystal structure of the Tp34 (TP0971) lipoprotein of treponema pallidum: implications of its metal-bound state and affinity for human lactoferrin. J.Biol.Chem., 282, 2007
7NWI	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S 分子名称: 18S ribosomal RNA, 28S ribosomal RNA+BlaS, 40S ribosomal protein S11, ... 著者 Powers, K.T, Yadav, S.K.N, Bufton, J.C, Schaffitzel, C. 登録日 2021-03-16 公開日 2021-07-07 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.13 Å) 主引用文献 Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA. Nucleic Acids Res., 49, 2021
7NZ0	Cryo-EM structure of the MukBEF-MatP-DNA monomer (open conformation) 分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
7NZ3	Cryo-EM structure of apposed MukBEF-MatP monomers on DNA 分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (11 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
2O8Y	Apo IRAK4 Kinase Domain 分子名称: Interleukin-1 receptor-associated kinase 4 著者 Boriack-Sjodin, P.A, Mol, C. 登録日 2006-12-12 公開日 2007-12-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of the apo and inhibited IRAK4 kinase domain To be Published
2O6M	H98Q mutant of the homing endonuclease I-PPOI complexed with DNA 分子名称: 5'-D(*DTP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DAP*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DA)-3', Intron-encoded endonuclease I-PpoI, MAGNESIUM ION, ... 著者 Eastberg, J.H, Stoddard, B.L. 登録日 2006-12-07 公開日 2007-10-30 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mutability of an HNH nuclease imidazole general base and exchange of a deprotonation mechanism. Biochemistry, 46, 2007

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