PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6FB2	Crystal Structure of a Tailored I-CreI Homing Endonuclease Protein (3115 variant) in complex with its target DNA (Haemoglobin beta subunit gene) in the presence of Manganese 分子名称: DNA (5'-D(*TP*CP*AP*GP*AP*CP*TP*TP*CP*TP*CP*CP*AP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*CP*TP*CP*CP*TP*GP*TP*GP*G)-3'), DNA (5'-D(P*AP*GP*AP*AP*GP*TP*CP*TP*GP*A)-3'), ... 著者 Molina, R, Prieto, J. 登録日 2017-12-18 公開日 2018-07-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Understanding the indirect DNA read-out specificity of I-CreI Meganuclease. Sci Rep, 8, 2018
1ZS4	Structure of bacteriophage lambda cII protein in complex with DNA 分子名称: DNA - 27mer, Regulatory protein CII 著者 Jain, D, Kim, Y, Maxwell, K.L, Beasley, S, Gussin, G.N, Edwards, A.M, Darst, S.A. 登録日 2005-05-23 公開日 2005-08-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal Structure of Bacteriophage lambdacII and Its DNA Complex. Mol.Cell, 19, 2005
6FB1	Crystal Structure of a Tailored I-CreI Homing Endonuclease Protein (3115 variant) in complex with its target DNA (Haemoglobin beta subunit gene) in the presence of Magnesium 分子名称: DNA (5'-D(*TP*CP*AP*GP*AP*CP*TP*TP*CP*TP*CP*CP*AP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*CP*TP*CP*CP*TP*GP*TP*GP*G)-3'), DNA (5'-D(P*AP*GP*AP*AP*GP*TP*CP*TP*GP*A)-3'), ... 著者 Molina, R, Prieto, J. 登録日 2017-12-18 公開日 2018-07-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.024 Å) 主引用文献 Understanding the indirect DNA read-out specificity of I-CreI Meganuclease. Sci Rep, 8, 2018
131D	THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SODIUM ION, SPERMINE 著者 Bancroft, D, Williams, L.D, Rich, A, Egli, M. 登録日 1993-06-18 公開日 1993-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove. Biochemistry, 33, 1994
7WWV	DNA bound-ICP1 Csy complex 分子名称: Csy1, Csy2, Csy3, ... 著者 Zhang, M, Peng, R. 登録日 2022-02-14 公開日 2023-04-26 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanistic insights into DNA binding and cleavage by a compact type I-F CRISPR-Cas system in bacteriophage. Proc.Natl.Acad.Sci.USA, 120, 2023
145D	Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) 分子名称: DNA (5'-D(*(5CM)P*DGP*DGP*DGP*(5CM)P*DG)-3'), DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3'), DNA (5'-D(*(MCY)P*GP*GP*GP*(5CM)P*G)-3') 著者 Schroth, G.P, Kagawa, T.F, Shing Ho, P. 登録日 1993-11-11 公開日 1994-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG). Biochemistry, 32, 1993
6HC3	TFAM bound to Site-X 分子名称: DNA (5'-D(*TP*TP*TP*GP*GP*TP*GP*GP*AP*AP*AP*TP*TP*TP*TP*TP*TP*GP*TP*TP*AP*G)-3'), DNA/RNA (5'-D(*TP*AP*AP*CP*AP*AP*AP*AP*AP*AP*TP*TP*TP*CP*CP*AP*CP*CP*AP*AP*AP*C)-3'), L(+)-TARTARIC ACID, ... 著者 Fernandez-Millan, P, Cuppari, A, Tarres-Sole, A, Rubio-Cosials, A, Lyonnais, S, Sola, M. 登録日 2018-08-13 公開日 2019-06-05 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region. Nucleic Acids Res., 47, 2019
180D	SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) 分子名称: DNA (5'-D(*CP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*GP*CP*G)-3') 著者 Sadasivan, C, Gautham, N. 登録日 1994-07-19 公開日 1995-07-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J.Mol.Biol., 248, 1995
187D	HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION 分子名称: DNA (5'-D(*CP*CP*CP*CP*GP*GP*GP*G)-3') 著者 Eisenstein, M, Shakked, Z. 登録日 1994-09-02 公開日 1995-02-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. J.Mol.Biol., 248, 1995
1D13	MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) 分子名称: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') 著者 Frederick, C.A, Quigley, G.J, Teng, M.-K, Coll, M, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J. 登録日 1989-10-20 公開日 1990-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular structure of an A-DNA decamer d(ACCGGCCGGT). Eur.J.Biochem., 181, 1989
6KIJ	Crystal structure of yedK with ssDNA containing an abasic site 分子名称: DNA (5'-D(*GP*AP*TP*TP*CP*GP*TP*CP*G)-3'), GLYCEROL, PENTANE-3,4-DIOL-5-PHOSPHATE, ... 著者 Wang, N, Bao, H, Huang, H. 登録日 2019-07-18 公開日 2019-08-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. Nucleic Acids Res., 47, 2019
181D	SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) 分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') 著者 Sadasivan, C, Gautham, N. 登録日 1994-07-22 公開日 1995-07-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J.Mol.Biol., 248, 1995
5D3G	Structure of HIV-1 Reverse Transcriptase Bound to a Novel 38-mer Hairpin Template-Primer DNA Aptamer 分子名称: DNA aptamer (38-MER), GLYCEROL, HIV-1 REVERSE TRANSCRIPTASE P51 subunit, ... 著者 Miller, M.T, Tuske, S, Das, K, Arnold, E. 登録日 2015-08-06 公開日 2015-09-30 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of HIV-1 reverse transcriptase bound to a novel 38-mer hairpin template-primer DNA aptamer. Protein Sci., 25, 2016
3KYL	Structure of the catalytic subunit of telomerase bound to its RNA template and telomeric DNA 分子名称: DNA/RNA (5'-R(*CP*UP*GP*AP*CP*CP*UP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*AP*GP*GP*TP*CP*AP*G)-3'), MAGNESIUM ION, Telomerase reverse transcriptase 著者 Skordalakes, E. 登録日 2009-12-06 公開日 2010-03-31 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for telomerase catalytic subunit TERT binding to RNA template and telomeric DNA. Nat.Struct.Mol.Biol., 17, 2010
1OKB	crystal structure of Uracil-DNA glycosylase from Atlantic cod (Gadus morhua) 分子名称: CHLORIDE ION, GLYCEROL, URACIL-DNA GLYCOSYLASE 著者 Leiros, I, Moe, E, Lanes, O, Smalas, A.O, Willassen, N.P. 登録日 2003-07-21 公開日 2004-04-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Crystal Structure of Uracil-DNA Glycosylase from Atlantic Cod (Gadus Morhua) Reveals Cold-Adaptation Features Acta Crystallogr.,Sect.D, 59, 2003
5UZI	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure 分子名称: DNA (5'-D(*CP*GP*AP*TP*TP*TP*TP*TP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*(M1A)P*AP*AP*AP*AP*AP*TP*CP*G)-3') 著者 Sathyamoorthy, B, Shi, H, Xue, Y, Al-Hashimi, H.M. 登録日 2017-02-26 公開日 2017-04-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A. Nucleic Acids Res., 45, 2017
6KCQ	Crystal structure of yedK with ssDNA containing an abasic site 分子名称: DNA (5'-D(P*AP*AP*AP*(PED)P*AP*A)-3'), SOS response-associated protein 著者 Wang, N, Bao, H, Huang, H. 登録日 2019-06-28 公開日 2019-07-10 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.701 Å) 主引用文献 Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. Nucleic Acids Res., 47, 2019
2AVT	Crystal structure of the beta subunit from DNA polymerase of Streptococcus pyogenes 分子名称: DNA polymerase III beta subunit 著者 Argiriadi, M.A, Goedken, E.R, Bruck, I, O'donnell, M, Kuriyan, J. 登録日 2005-08-30 公開日 2006-01-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. Bmc Struct.Biol., 6, 2006
6L75	Crystal structure of d(GTGGGCCGAC)2 DNA duplex 分子名称: DNA (5'-D(P*GP*TP*GP*GP*GP*CP*CP*GP*AP*C)-3') 著者 Hou, M.H, Satange, R.B, Zeng, J.Y. 登録日 2019-10-31 公開日 2021-01-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.578 Å) 主引用文献 Targeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction. Nucleic Acids Res., 49, 2021
7XUZ	Crystal structure of a HDAC4-MEF2A-DNA ternary complex 分子名称: DNA (5'-D(*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3'), DNA (5'-D(P*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*A)-3'), Histone deacetylase 4, ... 著者 Dai, S.Y, Guo, L, Dey, R, Guo, M, Bates, D, Cayford, J, Chen, X.J, Wei, X.D, Chen, L, Chen, Y.H. 登録日 2022-05-20 公開日 2023-11-29 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (3.591 Å) 主引用文献 Structural insights into the HDAC4-MEF2A-DNA complex and its implication in long-range transcriptional regulation. Nucleic Acids Res., 52, 2024
3N78	SgrAI bound to Secondary Site DNA and Mg(II) 分子名称: DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3'), MAGNESIUM ION, ... 著者 Horton, N.C, Little, E.J, Dunten, P.W. 登録日 2010-05-26 公開日 2010-11-24 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA. Acta Crystallogr.,Sect.D, 67, 2011
2O4A	Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA 分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1 著者 Yamasaki, K, Akiba, T, Harata, K. 登録日 2006-12-04 公開日 2007-08-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res., 35, 2007
3S6I	Schizosaccaromyces pombe 3-methyladenine DNA glycosylase (Mag1) in complex with abasic-DNA. 分子名称: (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3'), (5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3'), DNA-3-methyladenine glycosylase 1, ... 著者 Adhikary, S, Eichman, B.F. 登録日 2011-05-25 公開日 2011-12-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Analysis of substrate specificity of Schizosaccharomyces pombe Mag1 alkylpurine DNA glycosylase. Embo Rep., 12, 2011
2O49	Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA 分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1 著者 Yamasaki, K, Akiba, T, Harata, K. 登録日 2006-12-04 公開日 2007-08-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res., 35, 2007
3TQ1	Human DNA Polymerase eta in binary complex with DNA 分子名称: DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*TP*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta 著者 Ummat, A, Silverstein, T.D, Jain, R, Buku, A, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. 登録日 2011-09-08 公開日 2012-02-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.556 Å) 主引用文献 Human DNA Polymerase Eta Is Pre-Aligned for dNTP Binding and Catalysis. J.Mol.Biol., 415, 2012

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