PDB: 2682 件ウェブページステータス検索Chemie searchBIRD

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5Z3G	Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) 分子名称: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... 著者 Zhu, X, Zhou, D, Ye, K. 登録日 2018-01-06 公開日 2018-04-11 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.65 Å) 主引用文献 Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate. Protein Cell, 10, 2019
5HKV	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 23s ribosomal RNA, 50S ribosomal protein L13, ... 著者 Yonath, A, Matzov, D, Eyal, Z, Ben Hamou, R, Zimmerman, E, Rozenberg, H, Bashan, A, Fridman, M. 登録日 2016-01-14 公開日 2017-05-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.66 Å) 主引用文献 Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus. Nucleic Acids Res., 45, 2017
5LZX	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.67 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
8PHJ	cA4-bound Cami1 in complex with 70S ribosome 分子名称: 16S rRNA, 23S rRNA (2862-MER), 5S rRNA, ... 著者 Tamulaitiene, G, Mogila, I, Sasnauskas, G, Tamulaitis, G. 登録日 2023-06-20 公開日 2023-12-13 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.67 Å) 主引用文献 Ribosomal stalk-captured CARF-RelE ribonuclease inhibits translation following CRISPR signaling. Science, 382, 2023
6O8X	Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Jogl, G, Khayat, R. 登録日 2019-03-12 公開日 2020-09-23 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.68 Å) 主引用文献 Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
6BZ7	Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.68 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6N3Q	Cryo-EM structure of the yeast Sec complex 分子名称: Protein translocation protein SEC63, Protein transport protein SBH1, Protein transport protein SEC61, ... 著者 Park, E, Itskanov, S. 登録日 2018-11-16 公開日 2018-12-19 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.68 Å) 主引用文献 Structure of the posttranslational Sec protein-translocation channel complex from yeast. Science, 363, 2019
8BA0	Drosophila melanogaster complex I in the Twisted state (Dm2) 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Agip, A.N.A, Chung, I, Sanchez-Martinez, A, Whitworth, A.J, Hirst, J. 登録日 2022-10-10 公開日 2023-01-18 実験手法 ELECTRON MICROSCOPY (3.68 Å) 主引用文献 Cryo-EM structures of mitochondrial respiratory complex I from Drosophila melanogaster. Elife, 12, 2023
4V89	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Zhou, J, Lancaster, L, Trakhanov, S, Noller, H.F. 登録日 2011-11-17 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome. Rna, 18, 2012
6Q9A	Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rae, C.D. 登録日 2018-12-17 公開日 2019-04-17 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 How a circularized tmRNA moves through the ribosome. Science, 363, 2019
6Q95	Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ... 著者 Rae, C.D. 登録日 2018-12-17 公開日 2019-02-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 How a circularized tmRNA moves through the ribosome. Science, 363, 2019
6YSU	Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V. 登録日 2020-04-23 公開日 2020-08-19 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nat Commun, 11, 2020
5L3P	Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Arenz, S, Wilson, D.N. 登録日 2016-05-24 公開日 2016-07-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis. Nucleic Acids Res., 44, 2016
6OM7	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Li, W, Cate, J.H.D. 登録日 2019-04-18 公開日 2019-06-19 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule. Nat.Struct.Mol.Biol., 26, 2019
8ETI	Fkbp39 associated 60S nascent ribosome State 1 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
5ND8	Hibernating ribosome from Staphylococcus aureus (Unrotated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Khusainov, I, Vicens, Q, Ayupov, R, Usachev, K, Myasnikov, A, Simonetti, A, Validov, S, Kieffer, B, Yusupova, G, Yusupov, M, Hashem, Y. 登録日 2017-03-07 公開日 2017-06-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF. EMBO J., 36, 2017
6OUO	RF2 accommodated state bound 70S complex at long incubation time 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J. 登録日 2019-05-05 公開日 2019-06-19 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy. Nat Commun, 10, 2019
7B0N	A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM. 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, CARDIOLIPIN, ... 著者 Hirst, J, Grba, D. 登録日 2020-11-20 公開日 2021-03-10 最終更新日 2022-12-07 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A conserved arginine residue is critical for stabilizing the N2 FeS cluster in mitochondrial complex I. J.Biol.Chem., 296, 2021
7BL2	pre-50S-ObgE particle state 1 分子名称: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ... 著者 Hilal, T, Nikolay, R, Schmidt, S, Spahn, C.M.T. 登録日 2021-01-18 公開日 2021-05-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Mol.Cell, 81, 2021
7JSS	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-15 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT3	Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-17 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
6WD9	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Korostelev, A.A. 登録日 2020-03-31 公開日 2020-07-08 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature, 584, 2020
6VU3	Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R. 登録日 2020-02-14 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
7JSZ	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-16 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7NYV	Respiratory complex I from Escherichia coli - conformation 3 分子名称: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... 著者 Kolata, P, Efremov, R.G. 登録日 2021-03-23 公開日 2021-08-25 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation. Elife, 10, 2021

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