PDB: 11035 件ウェブページステータス検索Chemie searchBIRD

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5WGC	propionyl-DpsC in complex with oxetane-bearing probe 分子名称: (3-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}oxetan-3-yl)acetic acid, Daunorubicin-doxorubicin polyketide synthase 著者 Milligan, J.C, Ellis, B.D, White, A.R, Vanderwal, C.D, Tsai, S.C. 登録日 2017-07-13 公開日 2018-04-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 An Oxetane-Based Polyketide Surrogate To Probe Substrate Binding in a Polyketide Synthase. J. Am. Chem. Soc., 140, 2018
7D93	Crystal Structure of the Na+,K+-ATPase in the E2P state with bound Mg2+ and anthroylouabain (P2(1)2(1)2(1) symmetry) 分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C. 登録日 2020-10-12 公開日 2021-01-27 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.65 Å) 主引用文献 Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
6KXA	Galectin-3 CRD binds to GalA dimer 分子名称: Galectin-3, alpha-D-galactopyranuronic acid-(1-4)-beta-D-galactopyranuronic acid 著者 Su, J. 登録日 2019-09-10 公開日 2020-08-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.23 Å) 主引用文献 Topsy-turvy binding of negatively charged homogalacturonan oligosaccharides to galectin-3. Glycobiology, 31, 2021
5B25	Crystal structure of human PDE1B with inhibitor 3 分子名称: (11R,15S)-4-{[4-(6-fluoropyridin-2-yl)phenyl]methyl}-8-methyl-5-(phenylamino)-1,3,4,8,10-pentaazatetracyclo[7.6.0.02,6.011,15]pentadeca-2,5,9-trien-7-one, Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B, GLYCEROL, ... 著者 Ida, K, Lane, W, Snell, G, Sogabe, S. 登録日 2016-01-07 公開日 2016-02-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Discovery of Potent and Selective Inhibitors of Phosphodiesterase 1 for the Treatment of Cognitive Impairment Associated with Neurodegenerative and Neuropsychiatric Diseases J.Med.Chem., 59, 2016
5XP8	Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand 分子名称: DNA (5'-D(*AP*GP*T)-3'), DNA (5'-D(*CP*AP*AP*CP*C*AP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(P*TP*GP*AP*GP*AP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), ... 著者 Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, J.D, Wang, Y. 登録日 2017-06-01 公開日 2018-04-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes. Nucleic Acids Res., 45, 2017
6AA0	Crystal Structure of Toxoplasma gondii Prolyl tRNA Synthetase (TgPRS) in Apo Form 分子名称: GLYCEROL, Prolyl-tRNA synthetase (ProRS) 著者 Mishra, S, Kumari, S, Sharma, A, Yogavel, M. 登録日 2018-07-16 公開日 2019-10-23 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Conformational heterogeneity in apo and drug-bound structures of Toxoplasma gondii prolyl-tRNA synthetase. Acta Crystallogr.,Sect.F, 75, 2019
7DKD	Stenotrophomonas maltophilia DPP7 in complex with Asn-Tyr 分子名称: ASPARAGINE, Dipeptidyl-peptidase, GLYCEROL, ... 著者 Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. 登録日 2020-11-23 公開日 2021-11-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
7DKC	Stenotrophomonas maltophilia DPP7 in complex with Tyr-Tyr 分子名称: Dipeptidyl-peptidase, GLYCEROL, TYROSINE 著者 Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. 登録日 2020-11-23 公開日 2021-11-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
7DKE	Stenotrophomonas maltophilia DPP7 in complex with Phe-Tyr 分子名称: Dipeptidyl-peptidase, GLYCEROL, PHENYLALANINE, ... 著者 Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. 登録日 2020-11-23 公開日 2021-11-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
7DKB	Stenotrophomonas maltophilia DPP7 in complex with Val-Tyr 分子名称: Dipeptidyl-peptidase, TYROSINE, VALINE 著者 Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. 登録日 2020-11-23 公開日 2021-11-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
5XQ2	Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 5A6 on the guide strand 分子名称: DNA (5'-D(*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(*AP*GP*T)-3'), DNA (5'-D(P*TP*GP*AP*AP*GP*AP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), ... 著者 Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, D, Wang, Y. 登録日 2017-06-06 公開日 2017-10-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.33 Å) 主引用文献 Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes Nucleic Acids Res., 45, 2017
5X6U	Crystal structure of human heteropentameric complex 分子名称: Ragulator complex protein LAMTOR1, Ragulator complex protein LAMTOR2, Ragulator complex protein LAMTOR3, ... 著者 Yonehara, R, Nada, S, Nakai, T, Nakai, M, Kitamura, A, Ogawa, A, Nakatsumi, H, Nakayama, K.I, Li, S, Standley, D.M, Yamashita, E, Nakagawa, A, Okada, M. 登録日 2017-02-23 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural basis for the assembly of the Ragulator-Rag GTPase complex. Nat Commun, 8, 2017
6KXB	Galectin-3 CRD binds to GalA trimer 分子名称: Galectin-3, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-beta-D-galactopyranuronic acid 著者 Su, J. 登録日 2019-09-10 公開日 2020-08-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Topsy-turvy binding of negatively charged homogalacturonan oligosaccharides to galectin-3. Glycobiology, 31, 2021
3J6E	Energy minimized average structure of Microtubules stabilized by GmpCpp 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ... 著者 Alushin, G.M, Lander, G.C, Kellogg, E.H, Zhang, R, Baker, D, Nogales, E. 登録日 2014-02-18 公開日 2014-06-04 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 High-Resolution Microtubule Structures Reveal the Structural Transitions in alpha beta-Tubulin upon GTP Hydrolysis. Cell(Cambridge,Mass.), 157, 2014
3J6F	Minimized average structure of GDP-bound dynamic microtubules 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Alushin, G.M, Lander, G.C, Kellogg, E.H, Zhang, R, Baker, D, Nogales, E. 登録日 2014-02-19 公開日 2014-06-04 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 High-Resolution Microtubule Structures Reveal the Structural Transitions in alpha beta-Tubulin upon GTP Hydrolysis. Cell(Cambridge,Mass.), 157, 2014
3J7T	Calcium atpase structure with two bound calcium ions determined by electron crystallography of thin 3D crystals 分子名称: CALCIUM ION, SODIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 著者 Yonekura, K, Kato, K, Ogasawara, M, Tomita, M, Toyoshima, C. 登録日 2014-08-07 公開日 2015-02-18 最終更新日 2016-09-28 実験手法 ELECTRON CRYSTALLOGRAPHY (3.4 Å) 主引用文献 Electron crystallography of ultrathin 3D protein crystals: atomic model with charges Proc.Natl.Acad.Sci.USA, 112, 2015
6AL3	Lys49 PLA2 BPII derived from the venom of Protobothrops flavoviridis. 分子名称: Basic phospholipase A2 BP-II, SULFATE ION 著者 Matsui, T, Kamata, S, Suzuki, A, Oda-Ueda, N, Ogawa, T, Tanaka, Y. 登録日 2018-09-05 公開日 2019-01-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 SDS-induced oligomerization of Lys49-phospholipase A2from snake venom. Sci Rep, 9, 2019
5C5V	Recombinant Inorganic Pyrophosphatase from T brucei brucei 分子名称: 1,2-ETHANEDIOL, Acidocalcisomal pyrophosphatase, BROMIDE ION, ... 著者 Jamwal, A, Yogavel, M, Sharma, A. 登録日 2015-06-22 公開日 2015-11-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural and Functional Highlights of Vacuolar Soluble Protein 1 from Pathogen Trypanosoma brucei brucei J.Biol.Chem., 290, 2015
5X7V	Crystal structure of Nucleosome assembly protein S (PfNapS) from Plasmodium falciparum 分子名称: Nucleosome assembly protein 著者 Gill, J, Yogavel, M, Sharma, A. 登録日 2017-02-27 公開日 2017-03-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.802 Å) 主引用文献 Structure, localization and histone binding properties of nuclear-associated nucleosome assembly protein from Plasmodium falciparum. Malar. J., 9, 2010
5C5G	Crystal Structure of Aspergillus clavatus Sph3 分子名称: 1,2-ETHANEDIOL, spherulin-4 著者 Bamford, N.C, Little, D.J, Howell, P.L. 登録日 2015-06-19 公開日 2015-09-16 最終更新日 2020-01-08 実験手法 X-RAY DIFFRACTION (1.248 Å) 主引用文献 Sph3 Is a Glycoside Hydrolase Required for the Biosynthesis of Galactosaminogalactan in Aspergillus fumigatus. J.Biol.Chem., 290, 2015
5XPA	Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 9'U10' on the target strand 分子名称: DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), MAGNESIUM ION, RNA (5'-R(P*AP*UP*AP*CP*AP*AP*CP*CP*GP*UP*UP*CP*UP*AP*CP*UP*CP*CP*G)-3'), ... 著者 Sheng, G, Gogakos, T, Wang, J, Zhao, H, Serganov, A, Juranek, S, Tuschl, T, Patel, J.D, Wang, Y. 登録日 2017-06-01 公開日 2018-04-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes. Nucleic Acids Res., 45, 2017
5X5I	The X-ray crystal structure of a TetR family transcription regulator RcdA involved in the regulation of biofilm formation in Escherichia coli 分子名称: HTH-type transcriptional regulator RcdA 著者 Sugino, H, Usui, M, Shimada, T, Nakano, M, Ogasawara, H, Ishihama, A, Hirata, A. 登録日 2017-02-16 公開日 2017-12-27 実験手法 X-RAY DIFFRACTION (2.554 Å) 主引用文献 A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation. FEBS Lett., 591, 2017
5X6V	Crystal structure of human heteroheptameric complex 分子名称: ACETATE ION, Ragulator complex protein LAMTOR1, Ragulator complex protein LAMTOR2, ... 著者 Yonehara, R, Nada, S, Nakai, T, Nakai, M, Kitamura, A, Ogawa, A, Nakatsumi, H, Nakayama, K.I, Li, S, Standley, D.M, Yamashita, E, Nakagawa, A, Okada, M. 登録日 2017-02-23 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Structural basis for the assembly of the Ragulator-Rag GTPase complex. Nat Commun, 8, 2017
6L63	Human Coagulation Factor XIIa (FXIIa) bound with the macrocyclic peptide F3 containing two (1S,2S)-2-ACHC residues 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYL GROUP, ... 著者 Sengoku, T, Katoh, T, Hirata, K, Suga, H, Ogata, K. 登録日 2019-10-26 公開日 2020-09-02 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Ribosomal synthesis and de novo discovery of bioactive foldamer peptides containing cyclic beta-amino acids. Nat.Chem., 12, 2020
6LCQ	Crystal structure of rice defensin OsAFP1 分子名称: Defensin-like protein CAL1, PHOSPHATE ION 著者 Ochiai, A, Ogawa, K, Fukuda, M, Suzuki, M, Ito, K, Tanaka, T, Sagehashi, Y, Taniguchi, M. 登録日 2019-11-19 公開日 2020-04-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding. J.Biosci.Bioeng., 130, 2020

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