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7YYJ
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Tetragonal crystal structure of YTHDF1 YTH domain (544AVV546 mutant)
分子名称: 1,2-ETHANEDIOL, THIOCYANATE ION, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-18
公開日2023-03-01
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
6HUE
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ParkinS65N
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
著者McWilliams, T.G, Barini, E, Pohjolan-Pirhonen, R, Brooks, S.P, Singh, F, Burel, S, Balk, K, Kumar, A, Montava-Garriga, L, Prescott, A.R, Hassoun, S.M, Mouton-Liger, F, Ball, G, Hills, R, Knebel, A, Ulusoy, A, Di Monte, D.A, Tamjar, J, Antico, O, Fears, K, Smith, L, Brambilla, R, Palin, E, Valori, M, Eerola-Rautio, J, Tienari, P, Corti, O, Dunnett, S.B, Ganley, I.G, Suomalainen, A, Muqit, M.M.K.
登録日2018-10-07
公開日2018-10-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Phosphorylation of Parkin at serine 65 is essential for its activation in vivo .
Open Biology, 8, 2018
8RV7
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BU of 8rv7 by Molmil
SARS-CoV-2 nsp16-nsp10 in complex with SAM derivative inhibitor 4
分子名称: 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(3-oxidanylprop-1-ynyl)benzoic acid, ...
著者Kalnins, G.
登録日2024-01-31
公開日2024-02-14
最終更新日2024-10-02
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for inhibition of the SARS-CoV-2 nsp16 by substrate-based dual site inhibitors.
Chemmedchem, 2024
6ZYN
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BU of 6zyn by Molmil
Structure of VIM-2 with 2-Mercaptomethyl-thiazolidine L-anti-1b
分子名称: (2~{S},4~{R})-2-ethoxycarbonyl-5,5-dimethyl-2-(sulfanylmethyl)-1,3-thiazolidine-4-carboxylic acid, Beta-lactamase VIM-2, FORMIC ACID, ...
著者Hinchliffe, P, Spencer, J.
登録日2020-08-02
公開日2021-01-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.4000138 Å)
主引用文献2-Mercaptomethyl-thiazolidines use conserved aromatic-S interactions to achieve broad-range inhibition of metallo-beta-lactamases.
Chem Sci, 12, 2021
7YZ8
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BU of 7yz8 by Molmil
Triclinic crystal structure of YTHDF1 YTH domain (544AVV546 mutant)
分子名称: THIOCYANATE ION, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-19
公開日2023-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
8RV6
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BU of 8rv6 by Molmil
SARS-CoV-2 nsp16-nsp10 in complex with SAM derivative inhibitor 2
分子名称: 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(4-hydroxyphenyl)benzoic acid, ...
著者Kalnins, G.
登録日2024-01-31
公開日2024-02-14
最終更新日2024-10-02
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural basis for inhibition of the SARS-CoV-2 nsp16 by substrate-based dual site inhibitors.
Chemmedchem, 2024
7AAY
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Crystal structure of MerTK kinase domain in complex with Merestinib
分子名称: CHLORIDE ION, N-(3-fluoro-4-{[1-methyl-6-(1H-pyrazol-4-yl)-1H-indazol-5-yl]oxy}phenyl)-1-(4-fluorophenyl)-6-methyl-2-oxo-1,2-dihydropyridine-3-carboxamide, Tyrosine-protein kinase Mer
著者Schimpl, M, Pflug, A, McCoull, W, Nissink, J.W.M, Overman, R.C, Rawlins, P.B, Truman, C, Underwood, E, Warwicker, J, Winter-Holt, J.
登録日2020-09-05
公開日2020-10-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding.
Biochem.J., 477, 2020
8RVA
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SARS-CoV-2 nsp16-nsp10 in complex with SAM derivative inhibitor 7
分子名称: 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]benzoic acid, ...
著者Kalnins, G.
登録日2024-01-31
公開日2024-02-14
最終更新日2024-10-02
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for inhibition of the SARS-CoV-2 nsp16 by substrate-based dual site inhibitors.
Chemmedchem, 2024
7PZ1
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Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH8535
分子名称: 1,2-ETHANEDIOL, 4-(4-bromanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(3-methoxy-4-methyl-phenyl)piperidine-1-carboxamide, GLYCEROL, ...
著者Scaletti, E.R, Helleday, T, Stenmark, P.
登録日2021-10-11
公開日2022-11-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Optimization of N-Piperidinyl-Benzimidazolone Derivatives as Potent and Selective Inhibitors of 8-Oxo-Guanine DNA Glycosylase 1.
Chemmedchem, 18, 2023
6B7B
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BU of 6b7b by Molmil
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with 5-methoxy-2-methyl-1H-indole
分子名称: 5-methoxy-2-methyl-1H-indole, DIMETHYL SULFOXIDE, PYROPHOSPHATE 2-, ...
著者Proudfoot, A.W, Bussiere, D, Lingel, A.
登録日2017-10-03
公開日2017-12-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.981 Å)
主引用文献High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization.
J. Am. Chem. Soc., 139, 2017
6HOX
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BU of 6hox by Molmil
Crystal structure of the binding domain of Paraclostridial Mosquitocidal Protein 1
分子名称: ACETATE ION, Binding domain (Hc) of Paraclostridial Mosquitocidal Protein 1, DI(HYDROXYETHYL)ETHER
著者Masuyer, G, Stenmark, P.
登録日2018-09-18
公開日2019-07-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A neurotoxin that specifically targets Anopheles mosquitoes.
Nat Commun, 10, 2019
6HV6
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BU of 6hv6 by Molmil
Crystal structure of PatoxP, a cysteine protease-like domain of Photorhabdus asymbiotica toxin PaTox
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Toxin PAU_02230
著者Bogdanovic, X, Wirth, C, Hunte, C.
登録日2018-10-10
公開日2018-12-05
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献A cysteine protease-like domain enhances the cytotoxic effects of thePhotorhabdus asymbioticatoxin PaTox.
J. Biol. Chem., 294, 2019
6B7T
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BU of 6b7t by Molmil
Truncated strand 10-less green fluorescent protein
分子名称: Green fluorescent protein,Green fluorescent protein
著者Deng, A, Boxer, S.G.
登録日2017-10-05
公開日2017-12-27
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural Insight into the Photochemistry of Split Green Fluorescent Proteins: A Unique Role for a His-Tag.
J. Am. Chem. Soc., 140, 2018
7Q10
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BU of 7q10 by Molmil
Acetyltrasferase(3) type IIIa in complex with 3-N-methyl-nemycin B
分子名称: 3N methyl nemycin B, ACETATE ION, Aminoglycoside N(3)-acetyltransferase III, ...
著者Pontillo, N, Guskov, A.
登録日2021-10-17
公開日2022-11-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献3-N-alkylation in aminoglycoside antibiotic neomycin B overcomes bacterial resistance mediated by acetyltransferase (3) IIIa
To Be Published
7Z1G
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BU of 7z1g by Molmil
Crystal structure of nonphosphorylated (Tyr216) GSK3b in complex with CX-4945
分子名称: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid, Glycogen synthase kinase-3 beta, IMIDAZOLE, ...
著者Grygier, P, Pustelny, K, Dubin, G, Czarna, A.
登録日2022-02-24
公開日2023-03-08
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal structure of nonphosphorylated (Tyr216) GSK3b kinase in complex with CX-4945
To Be Published
6ZSQ
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BU of 6zsq by Molmil
Crystal structure of the Cisplatin beta-Lactoglobulin adduct formed after 18 h of soaking
分子名称: AMMONIA, Beta-lactoglobulin, PLATINUM (II) ION, ...
著者Balasco, N, Ferraro, G, Merlino, A.
登録日2020-07-16
公開日2020-09-30
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Cisplatin binding to beta-lactoglobulin: a structural study.
Dalton Trans, 49, 2020
6ZSR
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BU of 6zsr by Molmil
Crystal structure of the Cisplatin beta-Lactoglobulin adduct formed after 72 h of soaking
分子名称: AMMONIA, Beta-lactoglobulin, PLATINUM (II) ION, ...
著者Balasco, N, Ferraro, G, Merlino, A.
登録日2020-07-16
公開日2020-09-30
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献Cisplatin binding to beta-lactoglobulin: a structural study.
Dalton Trans, 49, 2020
7YYE
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BU of 7yye by Molmil
Orthorombic crystal structure of YTHDF1 YTH domain (G459N mutant) form I
分子名称: 1,2-ETHANEDIOL, MALONIC ACID, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Lolli, G.
登録日2022-02-17
公開日2023-03-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Pliability in the m 6 A-Binding Region Extends Druggability of YTH Domains.
J.Chem.Inf.Model., 2024
6HPG
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BU of 6hpg by Molmil
Arabidopsis OM64 TPR domain
分子名称: Heat shock protein 90-4, Outer envelope protein 64, mitochondrial
著者Schwenkert, S.
登録日2018-09-20
公開日2018-10-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Phosphorylation of the outer membrane mitochondrial protein OM64 influences protein import into mitochondria.
Mitochondrion, 44, 2019
6BBW
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BU of 6bbw by Molmil
Structure of the major pilin protein (T3.2) from Streptococcus pyogenes serotype GAS13637
分子名称: CALCIUM ION, Major pilin backbone protein T-antigen, T3.2.
著者Young, P.G, Baker, E.N, Moreland, N.J.
登録日2017-10-19
公開日2018-10-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Group AStreptococcusT Antigens Have a Highly Conserved Structure Concealed under a Heterogeneous Surface That Has Implications for Vaccine Design.
Infect.Immun., 87, 2019
6HPS
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BU of 6hps by Molmil
Near-infrared dual bioluminescence imaging in vivo using infra-luciferin
分子名称: Luciferin 4-monooxygenase, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate
著者Parkinson, G.N, Stowe, C, Anderson, J.C.
登録日2018-09-21
公開日2019-10-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Near-infrared dual bioluminescence imaging in mouse models of cancer using infraluciferin.
Elife, 8, 2019
7PI6
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BU of 7pi6 by Molmil
Trypanosoma brucei ISG65 bound to human complement C3d
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 65 kDa invariant surface glycoprotein, Complement C3dg fragment, ...
著者Cook, A.D, Higgins, M.K.
登録日2021-08-19
公開日2022-07-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Invariant surface glycoprotein 65 of Trypanosoma brucei is a complement C3 receptor.
Nat Commun, 13, 2022
6HQ5
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Structure of EAL Enzyme Bd1971 - cAMP and cyclic-di-GMP bound form
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CALCIUM ION, ...
著者Lovering, A.L, Cadby, I.T.
登録日2018-09-24
公開日2019-07-31
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
6B87
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Crystal structure of transmembrane protein TMHC2_E
分子名称: TMHC2_E
著者Lu, P, DiMaio, F, Min, D, Wei, K.Y, Bowie, J, Baker, D.
登録日2017-10-05
公開日2018-03-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.947 Å)
主引用文献Accurate computational design of multipass transmembrane proteins.
Science, 359, 2018
6B8G
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Twice-Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid
分子名称: CALCIUM ION, FE (III) ION, Ferritin heavy chain
著者Zhang, L, Bailey, J.B, Subramanian, R, Tezcan, F.A.
登録日2017-10-07
公開日2018-05-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Hyperexpandable, self-healing macromolecular crystals with integrated polymer networks.
Nature, 557, 2018

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