PDB: 187313 件ウェブページステータス検索Chemie searchBIRD

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4MUY	IspH in complex with pyridin-4-ylmethyl diphosphate 分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-4-ylmethyl trihydrogen diphosphate 著者 Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
8UTJ	E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ... 著者 Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. 登録日 2023-10-31 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
8UX8	E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame 分子名称: 16S ribosomal RNA, 23S rRNA, 30S ribosomal protein S11, ... 著者 Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. 登録日 2023-11-09 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
4MV0	IspH in complex with pyridin-2-ylmethyl diphosphate 分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-2-ylmethyl trihydrogen diphosphate 著者 Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
4XKT	E coli BFR variant Y149F 分子名称: Bacterioferritin, SULFATE ION 著者 Bradley, J.M, Hemmings, A.M, Le Brun, N.E. 登録日 2015-01-12 公開日 2015-12-16 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 Three Aromatic Residues are Required for Electron Transfer during Iron Mineralization in Bacterioferritin. Angew.Chem.Int.Ed.Engl., 54, 2015
6XZ2	Crystal structure of E. Coli purine nucleoside phosphorylase mutant Y160W with SO4 and Formycin A 分子名称: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, Purine nucleoside phosphorylase DeoD-type, SULFATE ION 著者 Narczyk, M, Bzowska, A. 登録日 2020-01-31 公開日 2021-02-10 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.65000308 Å) 主引用文献 Single tryptophan Y160W mutant of homooligomeric E. coli purine nucleoside phosphorylase implies that dimers forming the hexamer are functionally not equivalent. Sci Rep, 11, 2021
8FTN	E. coli ArnA dehydrogenase domain mutant - N492A 分子名称: Bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, SULFATE ION 著者 Sousa, M.C, Mitchell, M.E. 登録日 2023-01-12 公開日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Targeting the Conformational Change in ArnA Dehydrogenase for Selective Inhibition of Polymyxin Resistance. Biochemistry, 62, 2023
4MV5	IspH in complex with 6-chloropyridin-3-ylmethyl diphosphate 分子名称: (6-chloropyridin-3-yl)methyl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER 著者 Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
8SU9	E. coli SIR2-HerA complex (hexamer HerA bound with dodecamer Sir2) 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ... 著者 Shen, Z.F, Lin, Q.P, Fu, T.M. 登録日 2023-05-11 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense. Mol.Cell, 83, 2023
9CKT	X-ray diffraction structure of papain co-crystallized with E-64 分子名称: METHANOL, N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE, Papain 著者 Vlahakis, N.W, Rodriguez, J.A. 登録日 2024-07-09 公開日 2025-06-04 最終更新日 2025-06-11 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Enzymatic combinatorial synthesis of E-64 and related cysteine protease inhibitors. Nat.Chem.Biol., 2025
6DNC	E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Demo, G, Korostelev, A.A. 登録日 2018-06-06 公開日 2018-07-04 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Mechanism of premature translation termination on a sense codon. J. Biol. Chem., 293, 2018
8UAF	E. coli Sir2_HerA complex (12:6) bound with NAD+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Shen, Z.F, Lin, Q.P, Fu, T.M. 登録日 2023-09-20 公開日 2023-12-27 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense. Mol.Cell, 83, 2023
4MUX	IspH in complex with pyridin-3-ylmethyl diphosphate 分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, IRON/SULFUR CLUSTER, pyridin-3-ylmethyl trihydrogen diphosphate 著者 Span, I, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
2NBS	Backbone 1H, 13C, and 15N Chemical Shift Assignments for designed protein E_1r26 分子名称: E_1r26 著者 Zhou, X. 登録日 2016-03-12 公開日 2016-10-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Backbone 1H, 13C, and 15N Chemical Shift Assignments for designed protein E_1r26 To be Published
5MMO	E. coli DNA Gyrase B 24 kDa ATPase domain in complex with [3-(3-ethyl-ureido)-5-(pyridin-4-yl)-isoquinolin-8-yl-methyl]-carbamic acid prop-2-ynyl ester 分子名称: DNA gyrase subunit B, PHOSPHATE ION, prop-2-ynyl ~{N}-[[3-(ethylcarbamoylamino)-5-pyridin-4-yl-isoquinolin-8-yl]methyl]carbamate 著者 Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G. 登録日 2016-12-12 公開日 2017-04-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents. J. Med. Chem., 60, 2017
1ZPR	E. COLI THYMIDYLATE SYNTHASE MUTANT E58Q IN COMPLEX WITH CB3717 AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP) 分子名称: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE 著者 Sage, C.R, Stout, T.J, Rutenber, E.E, Stroud, R.M. 登録日 1996-10-15 公開日 1997-07-07 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 An essential role for water in an enzyme reaction mechanism: the crystal structure of the thymidylate synthase mutant E58Q. Biochemistry, 35, 1996
2PJJ	E. coli lytic transglycosylase MltA-D308A in apo-1 form 分子名称: Membrane-bound lytic murein transglycosylase A 著者 van Straaten, K.E, Dijkstra, B.W, Thunnissen, A.M.W.H. 登録日 2007-04-16 公開日 2007-05-08 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Structure of Escherichia coli Lytic transglycosylase MltA with bound chitohexaose: implications for peptidoglycan binding and cleavage J.Biol.Chem., 282, 2007
9DDM	E. coli TolAQR conformation I 分子名称: Tol-Pal system protein TolA, Tol-Pal system protein TolQ, Tol-Pal system protein TolR 著者 Celia, H, Botos, I. 登録日 2024-08-28 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Cryo-EM structures of the E. coli Ton and Tol motor complexes Nat Commun, 16, 2025
8URM	E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site 分子名称: 13S ribosomal RNA, 16S ribosomal RNA, 30S ribosomal protein S11, ... 著者 Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. 登録日 2023-10-26 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
9DDN	E. coli TolAQR conformation II 分子名称: Tol-Pal system protein TolA, Tol-Pal system protein TolQ, Tol-Pal system protein TolR 著者 Celia, H, Botos, I. 登録日 2024-08-28 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 Cryo-EM structures of the E. coli Ton and Tol motor complexes Nat Commun, 16, 2025
9DDO	E. coli TonB-ExbBD TonB bound to ExbB chain C 分子名称: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Biopolymer transport protein ExbB, Biopolymer transport protein ExbD, ... 著者 Celia, H, Botos, I. 登録日 2024-08-28 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Cryo-EM structures of the E. coli Ton and Tol motor complexes Nat Commun, 16, 2025
9DDP	E. coli TonB-ExbBD TonB bound to ExbB chain E 分子名称: Biopolymer transport protein ExbB, Biopolymer transport protein ExbD, Protein TonB 著者 Celia, H, Botos, I. 登録日 2024-08-28 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.16 Å) 主引用文献 Cryo-EM structures of the E. coli Ton and Tol motor complexes Nat Commun, 16, 2025
9DDQ	E. coli TonB-ExbBD TonB bound to ExbB chain A 分子名称: Biopolymer transport protein ExbB, Biopolymer transport protein ExbD, Protein TonB 著者 Celia, H, Botos, I. 登録日 2024-08-28 公開日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.19 Å) 主引用文献 Cryo-EM structures of the E. coli Ton and Tol motor complexes Nat Commun, 16, 2025
9CJN	Ligase Cp1B 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE, DI(HYDROXYETHYL)ETHER, ... 著者 Xin, Z, Yi, T. 登録日 2024-07-07 公開日 2025-05-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Enzymatic combinatorial synthesis of E-64 and related cysteine protease inhibitors. Nat.Chem.Biol., 2025
8SUW	E. coli SIR2-HerA complex (dodecamer SIR2 bound 4 protomers of HerA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ... 著者 Shen, Z.F, Lin, Q.P, Fu, T.M. 登録日 2023-05-13 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.15 Å) 主引用文献 Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense. Mol.Cell, 83, 2023

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