PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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336D	INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE 著者 Ohishi, H, Terasoma, N, Nakanishi, I, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Hakoshima, T, Tomita, K.-I. 登録日 1997-06-24 公開日 1998-04-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Interaction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex. FEBS Lett., 398, 1996
307D	Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis 分子名称: DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3') 著者 Han, G.W, Kopka, M.L, Cascio, D, Grzeskowiak, K, Dickerson, R.E. 登録日 1997-01-07 公開日 1997-01-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis. J.Mol.Biol., 269, 1997
6OZW	Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from Streptococcus mutans 分子名称: DNA topoisomerase 1, FORMIC ACID, MAGNESIUM ION 著者 Jones, J.A, Hevener, K.E. 登録日 2019-05-16 公開日 2019-06-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.063 Å) 主引用文献 Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from the gram-positive model organism Streptococcus mutans. Biochem.Biophys.Res.Commun., 516, 2019
2XNK	Structure and function of the Rad9-binding region of the DNA damage checkpoint adaptor TopBP1 分子名称: DNA TOPOISOMERASE 2-BINDING PROTEIN 1, GLYCEROL 著者 Rappas, M, Oliver, A.W, Pearl, L.H. 登録日 2010-08-03 公開日 2010-09-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure and Function of the Rad9-Binding Region of the DNA-Damage Checkpoint Adaptor Topbp1. Nucleic Acids Res., 39, 2011
5MJX	2'F-ANA/DNA Chimeric TBA Quadruplex structure 分子名称: DNA (5'-D(*GP*GP*(FT)P*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') 著者 Lietard, J, Abou Assi, H, Gomez-Pinto, I, Gonzalez, C, Somoza, M.M, Damha, M.J. 登録日 2016-12-02 公開日 2017-02-01 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Mapping the affinity landscape of Thrombin-binding aptamers on 2 F-ANA/DNA chimeric G-Quadruplex microarrays. Nucleic Acids Res., 45, 2017
7KWK	DNA-DB1879 complex: The DNA sequence 5'-CGCGAATTCGCG-3' presents a binding site for the heterocyclic small molecule (DB1879). 分子名称: 2-[5-(4-carbamimidoylphenyl)thiophen-2-yl]-1H-indole-6-carboximidamide, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Ogbonna, E, Fang, Z, Wilson, D.W. 登録日 2020-12-01 公開日 2021-12-08 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.37 Å) 主引用文献 Drug design and DNA structural research inspired by the Neidle laboratory: DNA minor groove binding and transcription factor inhibition by thiophene diamidines. Bioorg.Med.Chem., 68, 2022
3UXO	Crystal Structure of Rat DNA Polymerase Beta Mutator I260Q Apoenzyme 分子名称: DNA polymerase beta 著者 Gridley, C.L, Jaeger, J. 登録日 2011-12-05 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Changes in the Hydrophobic Hinge Region Adversely Affect the Activity and Fidelity of the I260Q Mutator DNA Polymerase beta. Biochemistry, 52, 2013
2XNH	Structure and function of the Rad9-binding region of the DNA damage checkpoint adaptor TopBP1 分子名称: DNA TOPOISOMERASE 2-BINDING PROTEIN 1, IODIDE ION 著者 Rappas, M, Oliver, A.W, Pearl, L.H. 登録日 2010-08-02 公開日 2010-09-01 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure and Function of the Rad9-Binding Region of the DNA-Damage Checkpoint Adaptor Topbp1. Nucleic Acids Res., 39, 2011
1D02	CRYSTAL STRUCTURE OF MUNI RESTRICTION ENDONUCLEASE IN COMPLEX WITH COGNATE DNA 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*TP*TP*GP*GP*C)-3'), TYPE II RESTRICTION ENZYME MUNI 著者 Deibert, M, Grazulis, S, Janulaitis, A, Siksnys, V, Huber, R. 登録日 1999-09-08 公開日 2000-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 A resolution. EMBO J., 18, 1999
8OLX	MutSbeta bound to (CAG)2 DNA (canonical form) 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (25-MER), DNA mismatch repair protein Msh2, ... 著者 Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. 登録日 2023-03-30 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 MutSbeta bound to (CAG)2 DNA (canonical form) To Be Published
7UGW	M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin 分子名称: DNA (46-MER), DNA gyrase subunit A, DNA gyrase subunit B, ... 著者 Hauk, G, Imai, Y, Lewis, K, Berger, J.M. 登録日 2022-03-25 公開日 2022-08-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis. Nat.Chem.Biol., 18, 2022
3UXN	Crystal Structure of Rat DNA Polymerase Beta, Wild Type Apoenzyme 分子名称: DNA polymerase beta 著者 Gridley, C.L, Firbank, S, Jaeger, J. 登録日 2011-12-05 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural Changes in the Hydrophobic Hinge Region Adversely Affect the Activity and Fidelity of the I260Q Mutator DNA Polymerase beta. Biochemistry, 52, 2013
1J8L	Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNA 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3'), MAGNESIUM ION 著者 Hossain, M.T, Sunami, T, Tsunoda, M, Hikima, T, Chatake, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2001-05-22 公開日 2001-09-28 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic studies on damaged DNAs IV. N(4)-methoxycytosine shows a second face for Watson-Crick base-pairing, leading to purine transition mutagenesis. Nucleic Acids Res., 29, 2001
4HW1	Multiple Crystal structures of an all-AT DNA dodecamer stabilized by weak interactions. 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*AP*TP*TP*TP*AP*TP*T)-3'), MAGNESIUM ION 著者 Acosta-Reyes, F, Subirana, J.A, Pous, J, Condom, N, Malinina, L, Campos, J.L. 登録日 2012-11-07 公開日 2013-11-20 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Polymorphic crystal structures of an all-AT DNA dodecamer. Biopolymers, 103, 2015
1YTF	YEAST TFIIA/TBP/DNA COMPLEX 分子名称: DNA (5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*GP*TP*AP*TP*AP*TP*AP*AP*AP*AP*C)-3'), PROTEIN (TATA BINDING PROTEIN (TBP)), ... 著者 Tan, S, Hunziker, Y, Sargent, D.F, Richmond, T.J. 登録日 1996-04-05 公開日 1996-06-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature, 381, 1996
4R89	Crystal structure of paFAN1 - 5' flap DNA complex with Manganase 分子名称: DNA (5'-D(P*AP*CP*CP*AP*GP*AP*CP*AP*CP*AP*CP*AP*TP*TP*C)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*C)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ... 著者 Cho, Y, Gwon, G.H, Kim, Y.R. 登録日 2014-08-30 公開日 2014-10-29 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (4.002 Å) 主引用文献 Crystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1 Genes Dev., 28, 2014
383D	Hydration and recognition of methylated CPG steps in DNA 分子名称: DNA (5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3'), MAGNESIUM ION 著者 Mayer-Jung, C, Moras, D, Timsit, Y. 登録日 1998-03-02 公開日 1998-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Hydration and Recognition of Methylated Cpg Steps in DNA Embo J., 17, 1998
1SRS	SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA 分子名称: DNA (5'-D(*CP*CP*(5IU)P*TP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*TP*GP*GP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*A P*AP*G)-3'), PROTEIN (SERUM RESPONSE FACTOR (SRF)) 著者 Pellegrini, L, Tan, S, Richmond, T.J. 登録日 1995-07-28 公開日 1995-07-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure of serum response factor core bound to DNA. Nature, 376, 1995
1D60	THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM 分子名称: DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), MAGNESIUM ION 著者 Lipanov, A, Kopka, M.L, Kaczor-Grzeskowiak, M, Quintana, J, Dickerson, R.E. 登録日 1992-02-26 公開日 1993-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA. Biochemistry, 32, 1993
2LKX	NMR structure of the homeodomain of Pitx2 in complex with a TAATCC DNA binding site 分子名称: DNA (5'-D(*CP*GP*GP*GP*GP*AP*TP*TP*AP*GP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*CP*TP*AP*AP*TP*CP*CP*CP*CP*G)-3'), Pituitary homeobox 3 著者 Baird-Titus, J.M, Doerdelmann, T, Chaney, B.A, Clark-Baldwin, K, Dave, V, Ma, J. 登録日 2011-10-21 公開日 2012-05-02 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the K50 class homeodomain PITX2 bound to DNA and implications for mutations that cause Rieger syndrome Biochemistry, 44, 2005
3AV6	Crystal structure of mouse DNA methyltransferase 1 with AdoMet 分子名称: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYLMETHIONINE, ZINC ION 著者 Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S. 登録日 2011-02-22 公開日 2011-05-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1). Proc.Natl.Acad.Sci.USA, 108, 2011
3AV5	Crystal structure of mouse DNA methyltransferase 1 with AdoHcy 分子名称: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S. 登録日 2011-02-22 公開日 2011-05-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1). Proc.Natl.Acad.Sci.USA, 108, 2011
3S4Z	Structure of a Y DNA-FANCI complex 分子名称: dna repair 1 著者 Pavletich, N.P. 登録日 2011-05-20 公開日 2011-07-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (7.8 Å) 主引用文献 Structure of the FANCI-FANCD2 complex: insights into the Fanconi anemia DNA repair pathway. Science, 333, 2011
8AV6	CryoEM structure of INO80 core nucleosome complex in closed grappler conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DASH complex subunit DAD4, ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-08-26 公開日 2022-12-14 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4.68 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8ATF	Nucleosome-bound Ino80 ATPase 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (226-MER), DNA (227-MER), ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-08-23 公開日 2022-12-14 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022

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