PDB: 3581 件ウェブページステータス検索Chemie searchBIRD

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4V6F	Elongation complex of the 70S ribosome with three tRNAs and mRNA. 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 23S RRNA, ... 著者 Jenner, L.B, Yusupova, G, Yusupov, M. 登録日 2009-07-09 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat.Struct.Mol.Biol., 17, 2010
4V7U	Crystal structure of the E. coli ribosome bound to erythromycin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Dunkle, J.A, Xiong, L, Mankin, A.S, Cate, J.H.D. 登録日 2010-08-15 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action. Proc.Natl.Acad.Sci.USA, 107, 2010
4V8B	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2011-12-06 公開日 2014-07-09 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012
4V9N	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 分子名称: 16S rRNA (1504-MER), 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Santos, N, Zhu, J, Donohue, J.P, Korostelev, A.A, Noller, H.F. 登録日 2013-04-26 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal Structure of the 70S Ribosome Bound with the Q253P Mutant Form of Release Factor RF2. Structure, 21, 2013
4V7K	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E. 登録日 2009-11-02 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell(Cambridge,Mass.), 139, 2009
4WCE	The crystal structure of the large ribosomal subunit of Staphylococcus aureus 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 23S rRNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Eyal, Z, Matzov, D, Krupkin, M, Wekselman, I, Zimmerman, E, Rozenberg, H, Bashan, A, Yonath, A. 登録日 2014-09-04 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.526 Å) 主引用文献 Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. Proc.Natl.Acad.Sci.USA, 112, 2015
4V5B	Structure of PDF binding helix in complex with the ribosome. 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Bingel-Erlenmeyer, R, Kohler, R, Kramer, G, Sandikci, A, Antolic, S, Maier, T, Schaffitzel, C, Wiedmann, B, Bukau, B, Ban, N. 登録日 2007-11-22 公開日 2014-07-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.74 Å) 主引用文献 A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing. Nature, 452, 2008
4V6A	Structure of EF-P bound to the 70S ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Stanley, R.E, Blaha, G. 登録日 2009-06-15 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science, 325, 2009
4V83	Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
4W2G	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ... 著者 Polikanov, Y.S, Osterman, I.A, Szal, T, Tashlitsky, V.N, Serebryakova, M.V, Kusochek, P, Bulkley, D, Malanicheva, I.A, Efimenko, T.A, Efremenkova, O.V, Konevega, A.L, Shaw, K.J, Bogdanov, A.A, Rodnina, M.V, Dontsova, O.A, Mankin, A.S, Steitz, T.A, Sergiev, P.V. 登録日 2014-09-12 公開日 2014-10-15 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome. Mol.Cell, 56, 2014
4V9A	Crystal Structure of the 70S ribosome with tetracycline. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Jenner, L, Yusupov, M, Yusupova, G. 登録日 2012-07-18 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.2999 Å) 主引用文献 Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis. Proc.Natl.Acad.Sci.USA, 110, 2013
4W2E	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Lin, J, Steitz, T.A. 登録日 2014-06-04 公開日 2014-10-01 最終更新日 2023-07-26 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of elongation factor 4 bound to a clockwise ratcheted ribosome. Science, 345, 2014
4V55	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-17 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
4V5K	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Ng, C.L, Lang, K, Meenan, N.A.G, Sharma, A, Kelley, A.C, Kleanthous, C, Ramakrishnan, V. 登録日 2010-05-29 公開日 2014-07-09 最終更新日 2019-07-31 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural Basis for 16S Ribosomal RNA Cleavage by the Cytotoxic Domain of Colicin E3. Nat.Struct.Mol.Biol., 17, 2010
3CMA	The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui 分子名称: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... 著者 Simonovic, M, Steitz, T.A. 登録日 2008-03-21 公開日 2008-09-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA. Rna, 14, 2008
3I55	Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... 著者 Gurel, G, Blaha, G, Steitz, T.A, Moore, P.B. 登録日 2009-07-03 公開日 2010-03-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui. Antimicrob.Agents Chemother., 53, 2009
6QUL	Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Scaiola, A, Leibundgut, M, Boehringer, D, Ritz, D. 登録日 2019-02-27 公開日 2019-04-10 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic. Sci Rep, 9, 2019
6QZP	High-resolution cryo-EM structure of the human 80S ribosome 分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 18S rRNA (1740-MER), 28S rRNA (3773-MER), ... 著者 Natchiar, S.K, Myasnikov, A.G, Kratzat, H, Hazemann, I, Klaholz, B.P. 登録日 2019-03-12 公開日 2019-04-24 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Visualization of chemical modifications in the human 80S ribosome structure. Nature, 551, 2017
6RVV	Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges. 分子名称: GOLD ION, Transcription attenuation protein MtrB 著者 Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G. 登録日 2019-06-03 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 An ultra-stable gold-coordinated protein cage displaying reversible assembly. Nature, 569, 2019
6TCL	Photosystem I tetramer 分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... 著者 Chen, M, Perez-Boerema, A, Li, S, Amunts, A. 登録日 2019-11-06 公開日 2020-02-19 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Distinct structural modulation of photosystem I and lipid environment stabilizes its tetrameric assembly. Nat.Plants, 6, 2020
6R6G	Structure of XBP1u-paused ribosome nascent chain complex with SRP. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R. 登録日 2019-03-27 公開日 2019-07-10 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
6R7Q	Structure of XBP1u-paused ribosome nascent chain complex with Sec61. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R. 登録日 2019-03-29 公開日 2019-07-10 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
6SGC	Rabbit 80S ribosome stalled on a poly(A) tail 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Chandrasekaran, V, Juszkiewicz, S, Choi, J, Puglisi, J.D, Brown, A, Shao, S, Ramakrishnan, V, Hegde, R.S. 登録日 2019-08-03 公開日 2019-12-04 最終更新日 2022-03-30 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Mechanism of ribosome stalling during translation of a poly(A) tail. Nat.Struct.Mol.Biol., 26, 2019
6T4Q	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Tesina, P, Buschauer, R, Cheng, J, Berninghausen, O, Becker, R, Beckmann, R. 登録日 2019-10-14 公開日 2019-12-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts. Embo J., 39, 2020
6R5Q	Structure of XBP1u-paused ribosome nascent chain complex (post-state) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2019-03-25 公開日 2019-07-10 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019

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