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2F3S
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Crystal Structure of the glycogen phosphorylase B / ethyl-N-(beta-D-glucopyranosyl)oxamate complex
分子名称: Glycogen phosphorylase, muscle form, N-[ethoxy(oxo)acetyl]-beta-D-glucopyranosylamine, ...
著者Oikonomakos, N.G, Leonidas, D.D.
登録日2005-11-22
公開日2006-05-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Binding of oxalyl derivatives of beta-d-glucopyranosylamine to muscle glycogen phosphorylase b.
Bioorg.Med.Chem., 14, 2006
1QMU
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BU of 1qmu by Molmil
Duck carboxypeptidase D domain II
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBOXYPEPTIDASE GP180 RESIDUES 503-882, SULFATE ION, ...
著者Gomis-Rueth, F.X, Coll, M, Aviles, F.X, Vendrell, J, Fricker, L.D.
登録日1999-10-06
公開日2000-10-13
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of Avian Carboxypeptidase D Domain II : A Prototype for the Regulatory Metallocarboxypeptidase Subfamily
Embo J., 18, 1999
2F3Q
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BU of 2f3q by Molmil
Crystal structure of the glycogen phosphorylase B / methyl-N-(beta-D-glucopyranosyl)oxamate complex
分子名称: Glycogen phosphorylase, muscle form, N-[methoxy(oxo)acetyl]-beta-D-glucopyranosylamine, ...
著者Oikonomakos, N.G, Leonidas, D.D.
登録日2005-11-22
公開日2006-05-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Binding of oxalyl derivatives of beta-d-glucopyranosylamine to muscle glycogen phosphorylase b.
Bioorg.Med.Chem., 14, 2006
2F3P
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BU of 2f3p by Molmil
Crystal Structure of the glycogen phosphorylase B / N-(beta-D-glucopyranosyl)oxamic acid complex
分子名称: Glycogen phosphorylase, muscle form, N-(carboxycarbonyl)-beta-D-glucopyranosylamine, ...
著者Oikonomakos, N.G, Leonidas, D.D.
登録日2005-11-22
公開日2006-05-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Binding of oxalyl derivatives of beta-d-glucopyranosylamine to muscle glycogen phosphorylase b.
Bioorg.Med.Chem., 14, 2006
2FFR
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BU of 2ffr by Molmil
Crystallographic studies on N-azido-beta-D-glucopyranosylamine, an inhibitor of glycogen phosphorylase: comparison with N-acetyl-beta-D-glucopyranosylamine
分子名称: Glycogen phosphorylase, muscle form, N-(azidoacetyl)-beta-D-glucopyranosylamine, ...
著者Petsalakis, E.I, Chrysina, E.D, Tiraidis, C, Hadjiloi, T, Leonidas, D.D, Oikonomakos, N.G, Aich, U, Varghese, B, Loganathan, D.
登録日2005-12-20
公開日2006-06-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Crystallographic studies on N-azidoacetyl-beta-d-glucopyranosylamine, an inhibitor of glycogen phosphorylase: Comparison with N-acetyl-beta-d-glucopyranosylamine.
Bioorg.Med.Chem., 14, 2006
6G1F
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BU of 6g1f by Molmil
Crystal structure of D-phenylglycine aninotransferase (D-PhgAT) from Pseudomonas stutzeri with PLP internal aldimine
分子名称: D-phenylglycine aminotransferase
著者Serpico, A, Marles-Wright, J, Campopiano, D.J.
登録日2018-03-21
公開日2019-04-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.248 Å)
主引用文献D-Phenylglycine aminotransferase (D-PhgAT) – substrate scope and structural insights of a stereo-inverting biocatalyst used in the preparation of aromatic amino acids
Catalysis Science And Technology, 2020
8TM9
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BU of 8tm9 by Molmil
Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x bound to peptide
分子名称: D_3_633_8x peptide bound, MC1, N-PROPANOL, ...
著者Kennedy, M.A, Stoddard, B.L, Hicks, D.R.
登録日2023-07-28
公開日2024-12-11
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x bound to peptide
To Be Published
4Y4V
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Structure of Helicobacter pylori Csd6 in the D-Ala-bound state
分子名称: Conserved hypothetical secreted protein, D-ALANINE, GLYCEROL
著者Kim, H.S, Im, H.N, Yoon, H.J, Suh, S.W.
登録日2015-02-11
公開日2015-09-02
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献The Cell Shape-determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of l,d-Carboxypeptidase
J.Biol.Chem., 290, 2015
5L34
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Calculated solution structure of [D-Trp3]-Contryphan-Vc2
分子名称: [D-Trp3]-Contryphan-Vc2
著者Drane, S.B, Chhabra, S, MacRaild, C.A.
登録日2016-08-03
公開日2017-03-08
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Structure and activity of contryphan-Vc2: Importance of the d-amino acid residue.
Toxicon, 129, 2017
6CKG
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BU of 6ckg by Molmil
D-glycerate 3-kinase from Cryptococcus neoformans var. grubii serotype A (H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
分子名称: 1,2-ETHANEDIOL, D-glycerate 3-kinase
著者Horanyi, P.S, Abendroth, J, Lorimer, D.D, Edwards, T.E, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2018-02-28
公開日2018-04-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献D-glycerate 3-kinase from Cryptococcus neoformans var. grubii serotype A (H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
To be Published
1ALZ
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BU of 1alz by Molmil
GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)
分子名称: ETHANOL, ILE-GRAMICIDIN C, VAL-GRAMICIDIN A
著者Burkhart, B.M, Pangborn, W.A, Duax, W.L, Langs, D.A.
登録日1997-06-06
公開日1998-03-04
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Heterodimer Formation and Crystal Nucleation of Gramicidin D
Biophys.J., 75, 1998
432D
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BU of 432d by Molmil
D(GGCCAATTGG) COMPLEXED WITH DAPI
分子名称: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3')
著者Vlieghe, D, Van Meervelt, L.
登録日1998-10-14
公開日1999-12-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Crystal structure of d(GGCCAATTGG) complexed with DAPI reveals novel binding mode.
Biochemistry, 38, 1999
1ALX
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GRAMICIDIN D FROM BACILLUS BREVIS (METHANOL SOLVATE)
分子名称: GRAMICIDIN A, METHANOL
著者Burkhart, B.M, Langs, D.A, Smith, G.D, Courseille, C, Precigoux, G, Hospital, M, Pangborn, W.A, Duax, W.L.
登録日1997-06-05
公開日1998-03-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Heterodimer Formation and Crystal Nucleation of Gramicidin D
Biophys.J., 75, 1998
2XPC
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BU of 2xpc by Molmil
Second-generation sulfonamide inhibitors of MurD: Activity optimisation with conformationally rigid analogues of D-glutamic acid
分子名称: (1R,3R,4S)-4-[({6-[(4-CYANO-2-FLUOROBENZYL)OXY]NAPHTHALEN-2-YL}SULFONYL)AMINO]CYCLOHEXANE-1,3-DICARBOXYLIC ACID, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Sosic, I, Barreteau, H, Simcic, M, Sink, R, Cesar, J, Golic-Grdadolnik, S, Contreras-Martel, C, Dessen, A, Amoroso, A, Joris, B, Blanot, D, Gobec, S.
登録日2010-08-26
公開日2011-05-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Second-Generation Sulfonamide Inhibitors of D- Glutamic Acid-Adding Enzyme: Activity Optimisation with Conformationally Rigid Analogues of D- Glutamic Acid.
Eur.J.Med.Chem, 46, 2011
7KJN
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BU of 7kjn by Molmil
CRYSTAL STRUCTURE OF HUMAN MDMX IN COMPLEX WITH D-PEPTIDE INHIBITOR (DPMI-OMEGA)
分子名称: D-PMI-omega, Protein Mdm4
著者Tolbert, W.D, Pazgier, M.
登録日2020-10-26
公開日2021-11-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献CRYSTAL STRUCTURE OF HUMAN MDMX IN COMPLEX WITH D-PEPTIDE INHIBITOR (DPMI-OMEGA)
To Be Published
1ZUE
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BU of 1zue by Molmil
Revised Solution Structure of DLP-2
分子名称: Defensin-like peptide 2/4
著者Torres, A.M, Tsampazi, C, Geraghty, D.P, Bansal, P.S, Alewood, P.F, Kuchel, P.W.
登録日2005-05-30
公開日2005-08-02
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献D-amino acid residue in a defensin-like peptide from platypus venom: effect on structure and chromatographic properties.
Biochem.J., 391, 2005
4Q3F
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BU of 4q3f by Molmil
Human D-DT complexed with tartrate
分子名称: D-dopachrome decarboxylase, L(+)-TARTARIC ACID
著者Rajasekaran, D, Lolis, E.
登録日2014-04-11
公開日2014-06-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Targeting distinct tautomerase sites of D-DT and MIF with a single molecule for inhibition of neutrophil lung recruitment.
Faseb J., 28, 2014
7U9K
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Staphylococcus aureus D-alanine-D-alanine ligase in complex with ATP, D-ala-D-ala, Mg2+ and K+
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanine ligase, ...
著者Pederick, J.L, Bruning, J.B.
登録日2022-03-10
公開日2023-03-15
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-guided design and synthesis of ATP-competitive N-acyl-substituted sulfamide d-alanine-d-alanine ligase inhibitors.
Bioorg.Med.Chem., 96, 2023
1UNO
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BU of 1uno by Molmil
Crystal structure of a d,l-alternating peptide
分子名称: H-(L-TYR-D-TYR)4-LYS-OH
著者Alexopoulos, E, Kuesel, A, Uson, I, Diederichsen, U, Sheldrick, G.M.
登録日2003-09-11
公開日2004-09-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Solution and Structure of an Alternating D,L-Peptide
Acta Crystallogr.,Sect.D, 60, 2004
1BQG
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BU of 1bqg by Molmil
THE STRUCTURE OF THE D-GLUCARATE DEHYDRATASE PROTEIN FROM PSEUDOMONAS PUTIDA
分子名称: D-GLUCARATE DEHYDRATASE
著者Gulick, A.M, Palmer, D.R.J, Babbitt, P.C, Gerlt, J.A, Rayment, I.
登録日1998-08-15
公開日1999-05-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Evolution of enzymatic activities in the enolase superfamily: crystal structure of (D)-glucarate dehydratase from Pseudomonas putida.
Biochemistry, 37, 1998
1XIB
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MODES OF BINDING SUBSTRATES AND THEIR ANALOGUES TO THE ENZYME D-XYLOSE ISOMERASE
分子名称: D-XYLOSE ISOMERASE, MANGANESE (II) ION
著者Carrell, H.L, Glusker, J.P.
登録日1994-03-07
公開日1994-06-22
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Modes of binding substrates and their analogues to the enzyme D-xylose isomerase.
Acta Crystallogr.,Sect.D, 50, 1994
3L8L
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Gramicidin D complex with sodium iodide
分子名称: GRAMICIDIN D, IODIDE ION, METHANOL, ...
著者Olczak, A, Glowka, M.L, Szczesio, M, Bojarska, J, Wawrzak, Z, Duax, W.L.
登録日2009-12-31
公開日2010-07-28
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献The first crystal structure of a gramicidin complex with sodium: high-resolution study of a nonstoichiometric gramicidin D-NaI complex.
Acta Crystallogr.,Sect.D, 66, 2010
1XLE
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MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT
分子名称: D-XYLOSE ISOMERASE, MANGANESE (II) ION
著者Collyer, C.A, Henrick, K, Blow, D.M.
登録日1991-10-09
公開日1993-07-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift.
J.Mol.Biol., 212, 1990
1XLB
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MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT
分子名称: D-XYLOSE ISOMERASE, MAGNESIUM ION
著者Collyer, C.A, Henrick, K, Blow, D.M.
登録日1991-10-09
公開日1993-07-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift.
J.Mol.Biol., 212, 1990
1XLK
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MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT
分子名称: D-XYLOSE ISOMERASE, MANGANESE (II) ION
著者Collyer, C.A, Henrick, K, Blow, D.M.
登録日1991-10-09
公開日1993-07-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift.
J.Mol.Biol., 212, 1990

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