PDB: 199 件ウェブページステータス検索Chemie searchBIRD

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1MH3	maltose binding-a1 homeodomain protein chimera, crystal form I 分子名称: maltose binding-a1 homeodomain protein chimera 著者 Ke, A, Wolberger, C. 登録日 2002-08-19 公開日 2002-09-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Insights into binding cooperativity of MATa1/MATalpha2 from the crystal structure of a MATa1 homeodomain-maltose binding protein chimera Protein Sci., 12, 2003
5EG0	HOXB13-MEIS1 heterodimer bound to DNA 分子名称: DNA (5'-D(*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3'), DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*G)-3'), Homeobox protein Hox-B13, ... 著者 Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. 登録日 2015-10-26 公開日 2016-11-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.101 Å) 主引用文献 Molecular basis of recognition of two distinct DNA sequences by a single transcription factor To Be Published
1MH4	maltose binding-a1 homeodomain protein chimera, crystal form II 分子名称: maltose binding-a1 homeodomain protein chimera 著者 Ke, A, Wolberger, C. 登録日 2002-08-19 公開日 2002-09-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Insights into binding cooperativity of MATa1/MATalpha2 from the crystal structure of a MATa1 homeodomain-maltose binding protein chimera Protein Sci., 12, 2003
8G88	Human Oct4 bound to nucleosome with human nMatn1 sequence 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. 登録日 2023-02-17 公開日 2023-03-22 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G87	Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of Oct4 bound region) 分子名称: POU domain, class 5, transcription factor 1, ... 著者 Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. 登録日 2023-02-17 公開日 2023-03-22 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (8.1 Å) 主引用文献 Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8B	Nucleosome with human nMatn1 sequence in complex with Human Oct4 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. 登録日 2023-02-17 公開日 2023-03-22 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8G	Interaction of H3 tail in LIN28B nucleosome with Oct4 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. 登録日 2023-02-17 公開日 2023-03-22 最終更新日 2023-12-13 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8E	Human Oct4 bound to nucleosome with human LIN28B sequence 分子名称: LIN28B DNA (32-MER), POU domain, class 5, ... 著者 Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. 登録日 2023-02-17 公開日 2023-03-22 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
1AU7	PIT-1 MUTANT/DNA COMPLEX 分子名称: CONSENSUS DNA 25-MER, DNA (5'-D(*CP*TP*TP*CP*CP*TP*CP*AP*TP*GP*TP*AP*TP*AP*TP*AP*C P*AP*TP*GP*AP*GP* GP*A)-3'), PROTEIN PIT-1 著者 Jacobson, E.M, Li, P, Leon-Del-Rio, A, Rosenfeld, M.G, Aggarwal, A.K. 登録日 1997-09-12 公開日 1998-01-28 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility. Genes Dev., 11, 1997
1B8I	STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX 分子名称: DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE), ... 著者 Passner, J.M, Ryoo, H.-D, Shen, L, Mann, R.S, Aggarwal, A.K. 登録日 1999-02-01 公開日 1999-04-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex. Nature, 397, 1999
2R5Y	Structure of Scr/Exd complex bound to a consensus Hox-Exd site 分子名称: DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3'), Homeobox protein extradenticle, ... 著者 Aggarwal, A.K, Passner, J.M, Jain, R. 登録日 2007-09-04 公開日 2008-02-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Functional specificity of a Hox protein mediated by the recognition of minor groove structure Cell(Cambridge,Mass.), 131, 2007
2R5Z	Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene 分子名称: DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DAP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DTP*DTP*DAP*DGP*DAP*DG)-3'), Homeobox protein extradenticle, ... 著者 Aggarwal, A.K, Passner, J.M, Jain, R. 登録日 2007-09-04 公開日 2008-02-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Functional specificity of a Hox protein mediated by the recognition of minor groove structure Cell(Cambridge,Mass.), 131, 2007
1HF0	Crystal structure of the DNA-binding domain of Oct-1 bound to DNA as a dimer 分子名称: DNA 5'-D(*CP*AP*CP*AP*TP*TP*TP*GP*AP*AP*AP*GP*GP* CP*AP*AP*AP*TP*GP*GP*AP*G)-3', DNA 5'-D(*CP*TP*CP*CP*AP*TP*TP*TP*GP*CP*CP*TP*TP* TP*CP*AP*AP*AP*TP*GP*TP*G)-3', OCTAMER-BINDING TRANSCRIPTION FACTOR 1 著者 Remenyi, A, Tomilin, A, Pohl, E, Scholer, H.R, Wilmanns, M. 登録日 2000-11-27 公開日 2001-11-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Differential Dimer Activities of the Transcription Factor Oct-1 by DNA-Induced Interface Swapping Mol.Cell, 8, 2001
1GT0	Crystal structure of a POU/HMG/DNA ternary complex 分子名称: 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3', OCTAMER-BINDING TRANSCRIPTION FACTOR 1, ... 著者 Remenyi, A, Wilmanns, M. 登録日 2002-01-09 公開日 2003-01-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structure of a POU/Hmg/DNA Ternary Complex Suggests Differential Assembly of Oct4 and Sox2 on Two Enhancers Genes Dev., 17, 2003
5ZJT	Structure of AbdB/Exd complex bound to a 'Black14' DNA sequence 分子名称: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*AP*AP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*TP*TP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... 著者 Zeiske, T, Baburajendran, N, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. 登録日 2018-03-22 公開日 2018-08-29 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
5ZJS	Structure of AbdB/Exd complex bound to a 'Blue14' DNA sequence 分子名称: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*TP*AP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*TP*AP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... 著者 Baburajendran, N, Zeiske, T, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. 登録日 2018-03-22 公開日 2018-08-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.896 Å) 主引用文献 Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
5WC9	Human Pit-1 and 4xCATT DNA complex 分子名称: DNA (5'-D(*CP*CP*AP*TP*TP*CP*AP*TP*TP*CP*AP*TP*TP*CP*AP*TP*TP*CP*GP*GP*A)-3'), DNA (5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*AP*TP*GP*AP*AP*TP*GP*AP*AP*TP*GP*GP*T)-3'), Pituitary-specific positive transcription factor 1 著者 Agarwal, S, Cho, T.Y. 登録日 2017-06-29 公開日 2017-11-22 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Biochemical and structural characterization of a novel cooperative binding mode by Pit-1 with CATT repeats in the macrophage migration inhibitory factor promoter. Nucleic Acids Res., 46, 2018
5ZJR	Structure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence 分子名称: DNA (5'-D(*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*C)-3'), Homeobox protein abdominal-B, ... 著者 Zeiske, T, Baburajendran, N, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. 登録日 2018-03-22 公開日 2018-08-29 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (3.03 Å) 主引用文献 Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
1O4X	TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT 分子名称: 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3', Transcription factor SOX-2, ... 著者 Clore, G.M, Williams, D.C. 登録日 2003-07-17 公開日 2004-01-27 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. J.Biol.Chem., 279, 2004
1OCT	CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES 分子名称: DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), PROTEIN (OCT-1 POU DOMAIN) 著者 Klemm, J.D, Rould, M.A, Aurora, R, Herr, W, Pabo, C.O. 登録日 1994-05-09 公開日 1994-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules. Cell(Cambridge,Mass.), 77, 1994
1S7E	Solution structure of HNF-6 分子名称: Hepatocyte nuclear factor 6 著者 Liao, X, Sheng, W. 登録日 2004-01-29 公開日 2004-12-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the hepatocyte nuclear factor 6alpha and its interaction with DNA. J.Biol.Chem., 279, 2004
2D5V	Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter 分子名称: 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... 著者 Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. 登録日 2005-11-07 公開日 2006-12-05 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6 Structure, 15, 2007
8OTS	OCT4 and MYC-MAX co-bound to a nucleosome 分子名称: DNA (127-MER), Green fluorescent protein,POU domain, class 5, ... 著者 Michael, A.K, Stoos, L, Kempf, G, Cavadini, S, Thoma, N. 登録日 2023-04-21 公開日 2023-05-24 最終更新日 2023-07-26 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cooperation between bHLH transcription factors and histones for DNA access. Nature, 619, 2023
8OSB	TWIST1-TCF4-ALX4 complex on specific DNA 分子名称: DNA (25-MER), Homeobox protein aristaless-like 4, Transcription factor 4, ... 著者 Morgunova, E, Kim, S, Popov, A, Wysocka, J, Taipale, J. 登録日 2023-04-18 公開日 2024-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 DNA-guided transcription factor cooperativity shapes face and limb mesenchyme. Cell, 187, 2024

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