PDB: 45118 件ウェブページステータス検索Chemie searchBIRD

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6W1I	Re-interpretation of ppGpp (G4P) electron density in the deposited crystal structure of Xanthine phosphoribosyltransferase (XPRT) (1Y0B). 分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, SODIUM ION, Xanthine phosphoribosyltransferase 著者 Satyshur, K.A, Anderson, B.W, Keck, J.L, Midwest Center for Structural Genomics (MCSG) 登録日 2020-03-04 公開日 2020-07-29 最終更新日 2021-04-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Molecular Mechanism of Regulation of the Purine Salvage Enzyme XPRT by the Alarmones pppGpp, ppGpp, and pGpp. J.Mol.Biol., 432, 2020
5IY5	Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution 分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... 著者 Shimada, S, Baba, J, Aoe, S, Shimada, A, Yamashita, E, Tsukihara, T. 登録日 2016-03-24 公開日 2017-01-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Complex structure of cytochrome c-cytochrome c oxidase reveals a novel protein-protein interaction mode EMBO J., 36, 2017
5MIW	X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uracil at 1.28 A. 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... 著者 Prokofev, I.I, Lashkov, A.A, Balaev, V.V, Gabdoulkhakov, A.G, Betzel, C, Mikhailov, A.M. 登録日 2016-11-29 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uracil at 1.28 A. To Be Published
3K39	Crystal Structure of B/Perth Neuraminidase D197E mutant in complex with Peramivir 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID, CALCIUM ION, ... 著者 Oakley, A.J, McKimm-Breschkin, J.L. 登録日 2009-10-02 公開日 2010-09-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Structural and Functional Basis of Resistance to Neuraminidase Inhibitors of Influenza B Viruses. J.Med.Chem., 2010
3K38	Crystal Structure of B/Perth Neuraminidase D197E mutant 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neuraminidase, ... 著者 Oakley, A.J, McKimm-Breschkin, J.L. 登録日 2009-10-02 公開日 2010-09-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural and Functional Basis of Resistance to Neuraminidase Inhibitors of Influenza B Viruses. J.Med.Chem., 2010
3K3A	Crystal Structure of B/Perth Neuraminidase D197E mutant in complex with Oseltamivir 分子名称: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Oakley, A.J, McKimm-Breschkin, J.L. 登録日 2009-10-02 公開日 2010-09-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Structural and Functional Basis of Resistance to Neuraminidase Inhibitors of Influenza B Viruses. J.Med.Chem., 2010
5NEX	The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine 分子名称: AGMATINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION 著者 Huang, L, Wang, J, Lilley, D.M.J. 登録日 2017-03-13 公開日 2017-05-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 The Structure of the Guanidine-II Riboswitch. Cell Chem Biol, 24, 2017
5J0Y	Binary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus 分子名称: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... 著者 Batra, V.K, Wilson, S.H. 登録日 2016-03-28 公開日 2016-10-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
3G6E	Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit 分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 23S ribosomal RNA, 50S ribosomal protein L10E, ... 著者 Gurel, G, Blaha, G, Moore, P.B, Steitz, T.A. 登録日 2009-02-06 公開日 2009-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome. J.Mol.Biol., 389, 2009
5JYD	Crystal Structure of a Putative Short Chain Dehydrogenase from Burkholderia cenocepacia 分子名称: 1,2-ETHANEDIOL, IODIDE ION, MAGNESIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-05-13 公開日 2016-06-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 TBD to be published
5JXJ	Structure of the proprotein convertase furin complexed to meta-guanidinomethyl-Phac-RVR-Amba in presence of EDTA 分子名称: 2UC-ARG-VAL-ARG-00S, CALCIUM ION, CHLORIDE ION, ... 著者 Dahms, S.O, Arciniega, M, Steinmetzer, T, Huber, R, Than, M.E. 登録日 2016-05-13 公開日 2016-10-05 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the unliganded form of the proprotein convertase furin suggests activation by a substrate-induced mechanism. Proc.Natl.Acad.Sci.USA, 113, 2016
5GTL	NADPH complex structure of Aldehyde Dehydrogenase from Bacillus cereus 分子名称: Betaine-aldehyde dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SODIUM ION 著者 Ngo, H.P.T, Hong, S.H, Ho, T.H, Oh, D.K, Kang, L.W. 登録日 2016-08-21 公開日 2017-09-06 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of aldehyde dehydrogenase from Bacillus cereus having atypical bidirectional oxidizing and reducing activities for all-trans-retinal To Be Published
3G71	Co-crystal structure of Bruceantin bound to the large ribosomal subunit 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... 著者 Gurel, G, Blaha, G, Moore, P.B, Steitz, T.A. 登録日 2009-02-09 公開日 2009-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome. J.Mol.Biol., 389, 2009
4FR8	Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Aldehyde dehydrogenase, ... 著者 Lang, B.S, Gruber, K. 登録日 2012-06-26 公開日 2012-09-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Vascular Bioactivation of Nitroglycerin by Aldehyde Dehydrogenase-2: REACTION INTERMEDIATES REVEALED BY CRYSTALLOGRAPHY AND MASS SPECTROMETRY. J.Biol.Chem., 287, 2012
3G4S	Co-crystal structure of Tiamulin bound to the large ribosomal subunit 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L10e, ... 著者 Gurel, G, Blaha, G, Moore, P.B, Steitz, T.A. 登録日 2009-02-04 公開日 2009-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome. J.Mol.Biol., 389, 2009
4CDB	Crystal structure of listeriolysin O 分子名称: ACETATE ION, LISTERIOLYSIN O, SODIUM ION, ... 著者 Koester, S, Yildiz, O. 登録日 2013-10-30 公開日 2014-04-23 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structure of Listeriolysin O Reveals Molecular Details of Oligomerization and Pore Formation Nat.Commun., 5, 2014
4TUR	Human DNA polymerase beta inserting dCMPNPP opposite the 5'G of cisplatin crosslinked Gs (Pt-GG2) 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, Cisplatin, DNA (5'-D(*CP*CP*CP*AP*CP*GP*GP*CP*CP*CP*AP*TP*CP*AP*CP*C)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2014-06-24 公開日 2014-10-01 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.169 Å) 主引用文献 Structural Basis for the Inefficient Nucleotide Incorporation Opposite Cisplatin-DNA Lesion by Human DNA Polymerase beta. J.Biol.Chem., 289, 2014
3HK7	Crystal structure of uronate isomerase from Bacillus halodurans complexed with zinc and D-Arabinarate, monoclinic crystal form 分子名称: CARBONATE ION, CHLORIDE ION, D-arabinaric acid, ... 著者 Fedorov, A.A, Fedorov, E.V, Nguyen, T.T, Raushel, F.M, Almo, S.C. 登録日 2009-05-22 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The mechanism of the reaction catalyzed by uronate isomerase illustrates how an isomerase may have evolved from a hydrolase within the amidohydrolase superfamily. Biochemistry, 48, 2009
4YY2	Computationally designed left-handed alpha/alpha toroid with 3 repeats in space group P212121 分子名称: SODIUM ION, dTor_3x33L 著者 Hallinan, J.P, Bradley, P, Stoddard, B.L. 登録日 2015-03-23 公開日 2015-12-16 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.854 Å) 主引用文献 Rational design of alpha-helical tandem repeat proteins with closed architectures. Nature, 528, 2015
4GDI	A subtype N10 neuraminidase-like protein of A/little yellow-shouldered bat/Guatemala/164/2009 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Zhu, X, Wilson, I.A. 登録日 2012-07-31 公開日 2012-09-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structures of two subtype N10 neuraminidase-like proteins from bat influenza A viruses reveal a diverged putative active site. Proc.Natl.Acad.Sci.USA, 109, 2012
4TUS	Human DNA polymerase beta inserting dCMPNPP opposite the 5'G of cisplatin crosslinked Gs (Pt-GG2) WITH MANGANESE IN THE ACTIVE SITE. 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, Cisplatin, DNA (5'-D(*CP*CP*CP*AP*CP*GP*GP*CP*CP*CP*AP*TP*CP*AP*CP*C)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2014-06-24 公開日 2014-10-01 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 Structural Basis for the Inefficient Nucleotide Incorporation Opposite Cisplatin-DNA Lesion by Human DNA Polymerase beta. J.Biol.Chem., 289, 2014
4TUQ	Human DNA polymerase beta inserting dCMPNPP opposite GG template (GG0b). 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*CP*AP*CP*GP*GP*CP*CP*CP*AP*TP*CP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*GP*AP*TP*GP*GP*GP*C)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2014-06-24 公開日 2014-10-01 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.367 Å) 主引用文献 Structural Basis for the Inefficient Nucleotide Incorporation Opposite Cisplatin-DNA Lesion by Human DNA Polymerase beta. J.Biol.Chem., 289, 2014
4TXO	Crystal structure of the mixed disulfide complex of thioredoxin-like TlpAs(C110S) and copper chaperone ScoIs(C74S) 分子名称: Blr1131 protein, DI(HYDROXYETHYL)ETHER, SODIUM ION, ... 著者 Scharer, M.A, Abicht, H.K, Glockshuber, R, Hennecke, H. 登録日 2014-07-04 公開日 2014-10-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 How Periplasmic Thioredoxin TlpA Reduces Bacterial Copper Chaperone ScoI and Cytochrome Oxidase Subunit II (CoxB) Prior to Metallation. J.Biol.Chem., 289, 2014
6O4Z	Structure of HLA-A2:01 with peptide MM92 分子名称: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ... 著者 Ying, G, Bitra, A, Zajonc, D.M. 登録日 2019-03-01 公開日 2020-01-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Anin silico-in vitroPipeline Identifying an HLA-A*02:01+KRAS G12V+Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients. Front Immunol, 10, 2019
6DXU	Crystal Structure of Parabacteroides merdae Beta-Glucuronidase (GUS) 分子名称: BICINE, Glycosyl hydrolase family 2, TIM barrel domain protein, ... 著者 Little, M.S, Redinbo, M.R. 登録日 2018-06-30 公開日 2019-02-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Active site flexibility revealed in crystal structures of Parabacteroides merdae beta-glucuronidase from the human gut microbiome. Protein Sci., 27, 2018

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