Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HK1
DownloadVisualize
BU of 6hk1 by Molmil
Crystal structure of the Thiazole synthase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, SODIUM ION, ...
著者Engilberge, S, Wagner, T, Santoni, G, Breyton, C, Shima, S, Franzetti, B, Riobe, F, Maury, O, Girard, E.
登録日2018-09-05
公開日2019-06-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Protein crystal structure determination with the crystallophore, a nucleating and phasing agent.
J.Appl.Crystallogr., 52, 2019
6N9I
DownloadVisualize
BU of 6n9i by Molmil
Structure of the Quorum Quenching lactonase from Parageobacillus caldoxylosilyticus - free
分子名称: 1,2-ETHANEDIOL, ACETATE ION, COBALT (II) ION, ...
著者Bergonzi, C, Schwab, M, Elias, M.
登録日2018-12-03
公開日2019-04-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Structural Determinants Accounting for the Broad Substrate Specificity of the Quorum Quenching Lactonase GcL.
Chembiochem, 20, 2019
6N9Q
DownloadVisualize
BU of 6n9q by Molmil
Structure of the Quorum Quenching lactonase from Parageobacillus caldoxylosilyticus bind to substrate C4-AHL
分子名称: 1,2-ETHANEDIOL, ACETATE ION, COBALT (II) ION, ...
著者Bergonzi, C, Schwab, M, Elias, M.
登録日2018-12-03
公開日2019-04-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The Structural Determinants Accounting for the Broad Substrate Specificity of the Quorum Quenching Lactonase GcL.
Chembiochem, 20, 2019
6FRQ
DownloadVisualize
BU of 6frq by Molmil
Structure of tetragonal Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM Potassium sodium tartrate tetrahydrate.
分子名称: CHLORIDE ION, Lysozyme C, TERBIUM(III) ION
著者Engilberge, S, Riobe, F, Di Pietro, S, Wagner, T, Shima, S, Girard, E, Dumont, E, Maury, O.
登録日2018-02-16
公開日2018-10-03
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
1ZD6
DownloadVisualize
BU of 1zd6 by Molmil
Crystal structure of human transthyretin with bound chloride
分子名称: CHLORIDE ION, Transthyretin
著者Hornberg, A, Hultdin, U.W, Olofsson, A, Sauer-Eriksson, A.E.
登録日2005-04-14
公開日2005-07-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The effect of iodide and chloride on transthyretin structure and stability
Biochemistry, 44, 2005
7SN4
DownloadVisualize
BU of 7sn4 by Molmil
Cryo-EM structure of the enterohemorrhagic E. coli O157:H7 flagellar filament
分子名称: Flagellin
著者Kreutzberger, M.A.B, Wang, F, Egelman, E.H.
登録日2021-10-27
公開日2022-03-16
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
1Y26
DownloadVisualize
BU of 1y26 by Molmil
A-riboswitch-adenine complex
分子名称: ADENINE, MAGNESIUM ION, Vibrio vulnificus A-riboswitch
著者Serganov, A, Yuan, Y.R, Patel, D.J.
登録日2004-11-20
公開日2004-12-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs
Chem.Biol., 11, 2004
6HXR
DownloadVisualize
BU of 6hxr by Molmil
Human PARP16 (ARTD15) IN COMPLEX WITH EB-47
分子名称: 2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide, Mono [ADP-ribose] polymerase PARP16
著者Karlberg, T, Pinto, A.F, Thorsell, A.G, Schuler, H.
登録日2018-10-18
公開日2019-10-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Human PARP16 (ARTD15) IN COMPLEX WITH EB-47
To Be Published
6HXS
DownloadVisualize
BU of 6hxs by Molmil
Human PARP16 (ARTD15) IN COMPLEX WITH CARBA-NAD
分子名称: ADENOSINE, CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, GLYCEROL, ...
著者Karlberg, T, Pinto, A.F, Thorsell, A.G, Schuler, H.
登録日2018-10-18
公開日2019-10-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Human PARP16 (ARTD15) IN COMPLEX WITH CARBA-NAD
To Be Published
6FRO
DownloadVisualize
BU of 6fro by Molmil
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium iodide.
分子名称: IODIDE ION, Lysozyme C, SODIUM ION, ...
著者Engilberge, S, Riobe, F, Di Pietro, S, Girard, E, Dumont, E, Maury, O.
登録日2018-02-16
公開日2018-10-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
1Z79
DownloadVisualize
BU of 1z79 by Molmil
Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)
分子名称: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'
著者Gherghe, C.M, Krahn, J.M, Weeks, K.M.
登録日2005-03-24
公開日2005-10-18
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA.
J.Am.Chem.Soc., 127, 2005
1YY0
DownloadVisualize
BU of 1yy0 by Molmil
Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch
分子名称: 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', CALCIUM ION
著者Gherghe, C.M, Krahn, J.M, Weeks, K.M.
登録日2005-02-23
公開日2005-10-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA.
J.Am.Chem.Soc., 127, 2005
6O0B
DownloadVisualize
BU of 6o0b by Molmil
Structural and Mechanistic Insights into CO2 Activation by Nitrogenase Iron Protein
分子名称: IRON/SULFUR CLUSTER, Nitrogenase iron protein
著者Rettberg, L.A, Stiebritz, M.T, Kang, W, Lee, C.C, Ribbe, M.W, Hu, Y.
登録日2019-02-15
公開日2019-09-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and Mechanistic Insights into CO2Activation by Nitrogenase Iron Protein.
Chemistry, 25, 2019
7S86
DownloadVisualize
BU of 7s86 by Molmil
Crystal structure of hydrophobin SC16, C2221
分子名称: 1,2-ETHANEDIOL, Hydrophobin, SODIUM ION
著者Vergunst, K.L, Langelaan, D.N.
登録日2021-09-17
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The N-terminal tail of the hydrophobin SC16 is not required for rodlet formation
Sci Rep, 12, 2022
6NWS
DownloadVisualize
BU of 6nws by Molmil
RORgamma Ligand Binding Domain
分子名称: 2-chloro-6-fluoro-N-(1-{[3-(trifluoromethyl)phenyl]sulfonyl}-2,3-dihydro-1H-indol-6-yl)benzamide, Nuclear receptor ROR-gamma
著者Strutzenberg, T.S, Park, H.J, Griffin, P.R.
登録日2019-02-07
公開日2019-07-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献HDX-MS reveals structural determinants for ROR gamma hyperactivation by synthetic agonists.
Elife, 8, 2019
7S7S
DownloadVisualize
BU of 7s7s by Molmil
Crystal structure of hydrophobin SC16, P21212
分子名称: Hydrophobin
著者Vergunst, K.L, Langelaan, D.N.
登録日2021-09-17
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The N-terminal tail of the hydrophobin SC16 is not required for rodlet formation.
Sci Rep, 12, 2022
1YLS
DownloadVisualize
BU of 1yls by Molmil
Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
分子名称: (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A-TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE-1,3(2H)-DIONE, MAGNESIUM ION, RNA Diels-Alder ribozyme
著者Serganov, A, Keiper, S, Malinina, L, Tereshko, V, Skripkin, E, Hobartner, C, Polonskaia, A, Phan, A.T, Wombacher, R, Micura, R, Dauter, Z, Jaschke, A, Patel, D.J.
登録日2005-01-19
公開日2005-02-22
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation.
Nat.Struct.Mol.Biol., 12, 2005
6N9R
DownloadVisualize
BU of 6n9r by Molmil
Structure of the Quorum Quenching lactonase from Parageobacillus caldoxylosilyticus bound to substrate 3-oxo-C12-AHL
分子名称: 1,2-ETHANEDIOL, ACETATE ION, COBALT (II) ION, ...
著者Bergonzi, C, Schwab, M, Elias, M.
登録日2018-12-03
公開日2019-04-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The Structural Determinants Accounting for the Broad Substrate Specificity of the Quorum Quenching Lactonase GcL.
Chembiochem, 20, 2019
1Y27
DownloadVisualize
BU of 1y27 by Molmil
G-riboswitch-guanine complex
分子名称: Bacillus subtilis xpt, GUANINE
著者Serganov, A, Yuan, Y.R, Patel, D.J.
登録日2004-11-20
公開日2004-12-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs
Chem.Biol., 11, 2004
7BKW
DownloadVisualize
BU of 7bkw by Molmil
Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
登録日2021-01-17
公開日2022-03-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
To Be Published
1Y1V
DownloadVisualize
BU of 1y1v by Molmil
Refined RNA Polymerase II-TFIIS complex
分子名称: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ...
著者Kettenberger, H, Armache, K.-J, Cramer, P.
登録日2004-11-19
公開日2004-12-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS.
Mol.Cell, 16, 2004
6NWU
DownloadVisualize
BU of 6nwu by Molmil
RORgamma Ligand Binding Domain
分子名称: 6-[(3,5-dichloropyridin-4-yl)methoxy]-1-{[3-(trifluoromethyl)phenyl]sulfonyl}-2,3-dihydro-1H-indole, Nuclear receptor ROR-gamma
著者Strutzenberg, T.S, Park, H, Griffin, P.R.
登録日2019-02-07
公開日2019-07-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献HDX-MS reveals structural determinants for ROR gamma hyperactivation by synthetic agonists.
Elife, 8, 2019
6NWT
DownloadVisualize
BU of 6nwt by Molmil
RORgamma Ligand Binding Domain
分子名称: 1,1,1,3,3,3-hexafluoro-2-[2-fluoro-4'-({4-[(pyridin-4-yl)methyl]piperazin-1-yl}methyl)[1,1'-biphenyl]-4-yl]propan-2-ol, Nuclear receptor ROR-gamma
著者Strutzenberg, T.S, Park, H, Griffin, P.R.
登録日2019-02-07
公開日2019-07-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献HDX-MS reveals structural determinants for ROR gamma hyperactivation by synthetic agonists.
Elife, 8, 2019
1Y77
DownloadVisualize
BU of 1y77 by Molmil
Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
分子名称: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ...
著者Kettenberger, H, Armache, K.-J, Cramer, P.
登録日2004-12-08
公開日2005-01-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS
Mol.Cell, 16, 2004
1Z7F
DownloadVisualize
BU of 1z7f by Molmil
Crystal structure of 16 base pair RNA duplex containing a C-A mismatch
分子名称: 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', STRONTIUM ION
著者Gherghe, C.M, Krahn, J.M, Weeks, K.M.
登録日2005-03-24
公開日2005-10-18
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA.
J.Am.Chem.Soc., 127, 2005

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon