PDB: 47065 件ウェブページステータス検索Chemie searchBIRD

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2AL0	Crystal structure of nitrophorin 2 ferrous aqua complex 分子名称: CITRIC ACID, Nitrophorin 2, PROTOPORPHYRIN IX CONTAINING FE 著者 Weichsel, A, Berry, R.E, Walker, F.A, Montfort, W.R. 登録日 2005-08-04 公開日 2006-07-18 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structures, ligand induced conformational change and heme deformation in complexes of nitrophorin 2, a nitric oxide transport protein from rhodnius prolixus To be Published
2AL6	FERM domain of Focal Adhesion Kinase 分子名称: Focal adhesion kinase 1 著者 Ceccarelli, D.F, Song, H.K, Poy, F, Schaller, M.D, Eck, M.J. 登録日 2005-08-04 公開日 2005-10-18 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal Structure of the FERM Domain of Focal Adhesion Kinase J.Biol.Chem., 281, 2006
4CCJ	60S ribosomal protein L8 histidine hydroxylase (NO66) in apo form 分子名称: 1,2-ETHANEDIOL, BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HISTIDYL-HYDROXYLASE NO66 著者 Chowdhury, R, Ge, W, Clifton, I.J, Schofield, C.J. 登録日 2013-10-23 公開日 2014-05-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Ribosomal oxygenases are structurally conserved from prokaryotes to humans. Nature, 510, 2014
4ZJS	Crystal structure of a chimeric acetylcholine binding protein from Aplysia Californica (Ac-AChBP) containing the main immunogenic region (MIR) from the human alpha 1 subunit of the muscle nicotinic acetylcholine receptor in complex with anatoxin-A. 分子名称: 1-[(1R,6R)-9-azabicyclo[4.2.1]non-2-en-2-yl]ethanone, Acetylcholine receptor subunit alpha,Soluble acetylcholine receptor,Acetylcholine receptor subunit alpha,Soluble acetylcholine receptor 著者 Talley, T.T, Bobango, J, Wu, J, Park, J.F, Luo, J, Lindsatrom, J, Taylor, P. 登録日 2015-04-29 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.2301 Å) 主引用文献 Main immunogenic region structure promotes binding of conformation-dependent myasthenia gravis autoantibodies, nicotinic acetylcholine receptor conformation maturation, and agonist sensitivity. J. Neurosci., 29, 2009
4C57	Structure of GAK kinase in complex with a nanobody 分子名称: (2Z,3E)-2,3'-BIINDOLE-2',3(1H,1'H)-DIONE 3-{O-[(3R)-3,4-DIHYDROXYBUTYL]OXIME}, 1,2-ETHANEDIOL, Cyclin-G-associated kinase, ... 著者 Chaikuad, A, Keates, T, Krojer, T, Allerston, C.K, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Muller-Knapp, S. 登録日 2013-09-10 公開日 2013-10-09 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structure of Cyclin G-Associated Kinase (Gak) Trapped in Different Conformations Using Nanobodies. Biochem.J., 459, 2014
3UIO	Complex between human RanGAP1-SUMO2, UBC9 and the IR1 domain from RanBP2 containing IR2 Motif II 分子名称: E3 SUMO-protein ligase RanBP2, Ran GTPase-activating protein 1, SUMO-conjugating enzyme UBC9, ... 著者 Gareau, J.R, Reverter, D, Lima, C.D. 登録日 2011-11-05 公開日 2011-12-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.602 Å) 主引用文献 Determinants of small ubiquitin-like modifier 1 (SUMO1) protein specificity, E3 ligase, and SUMO-RanGAP1 binding activities of nucleoporin RanBP2. J.Biol.Chem., 287, 2012
3UJ1	Crystal structure of the third thioredoxin domain of human ERp46 分子名称: Thioredoxin domain-containing protein 5 著者 Parthier, C, Funkner, A, Ferrari, D.M, Stubbs, M.T. 登録日 2011-11-07 公開日 2012-11-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.651 Å) 主引用文献 Peptide Binding by Catalytic Domains of the Protein Disulfide Isomerase-Related Protein ERp46. J.Mol.Biol., 425, 2013
4CCM	60S ribosomal protein L8 histidine hydroxylase (NO66) in complex with Mn(II), N-oxalylglycine (NOG) and 60S ribosomal protein L8 (RPL8 G220C) peptide fragment (complex-1) 分子名称: 1,2-ETHANEDIOL, 60S RIBOSOMAL PROTEIN L8, BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HISTIDYL-HYDROXYLASE NO66, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2013-10-23 公開日 2014-05-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Ribosomal oxygenases are structurally conserved from prokaryotes to humans. Nature, 510, 2014
4Z6F	Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(6OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2015-04-04 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.444 Å) 主引用文献 Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta. Biochem. J., 475, 2018
4Z6M	Structure of H200Q variant of Homoprotocatechuate 2,3-Dioxygenase from B.fuscum at 1.35 Ang resolution 分子名称: CALCIUM ION, CHLORIDE ION, FE (II) ION, ... 著者 Kovaleva, E.G, Lipscomb, J.D. 登録日 2015-04-06 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structural Basis for Substrate and Oxygen Activation in Homoprotocatechuate 2,3-Dioxygenase: Roles of Conserved Active Site Histidine 200. Biochemistry, 54, 2015
7CYC	Cryo-EM structures of Alphacoronavirus spike glycoprotein 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Song, X, Shi, Y, Ding, W, Liu, Z.J, Peng, G. 登録日 2020-09-03 公開日 2020-12-23 最終更新日 2021-06-02 実験手法 ELECTRON MICROSCOPY (3.21 Å) 主引用文献 Cryo-EM analysis of the HCoV-229E spike glycoprotein reveals dynamic prefusion conformational changes. Nat Commun, 12, 2021
6DU7	Glutathione reductase from Streptococcus pneumoniae 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Glutathione reductase, THIOCYANATE ION 著者 Maher, M.J, Sikanyika, M. 登録日 2018-06-19 公開日 2019-01-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 The structure and activity of the glutathione reductase from Streptococcus pneumoniae. Acta Crystallogr F Struct Biol Commun, 75, 2019
8EOE	Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_LG) 分子名称: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Vishwakarm, R.K, Murakami, K.S. 登録日 2022-10-03 公開日 2023-02-01 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
6DI7	Vps1 GTPase-BSE fusion complexed with GDP 分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative sorting protein 著者 Varlakhanova, N.V, Brady, T.M, Ford, M.G.J. 登録日 2018-05-22 公開日 2018-08-22 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol., 217, 2018
8EOS	M. tuberculosis RNAP elongation complex with NusG and CMPCPP 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (36-MER), DNA (38-MER), ... 著者 Vishwakarma, R.K, Murakami, K.S. 登録日 2022-10-04 公開日 2023-02-01 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
7D4A	The Crystal Structure of human JMJD2A Tudor domain from Biortus 分子名称: Lysine-specific demethylase 4A, SULFATE ION 著者 Wang, F, Lv, Z, Cheng, W, Lin, D, Ju, C, Bao, X, Zhu, B. 登録日 2020-09-23 公開日 2020-10-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 The Crystal Structure of human JMJD2A from Biortus. To Be Published
8EXY	M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP 分子名称: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Vishwakarma, R.K, Murakami, K.S. 登録日 2022-10-26 公開日 2023-02-01 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
8EM7	Cryo-EM structure of LRP2 at pH 5.2 分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Beenken, A, Cerutti, G, Fitzpatrick, A.W, Barasch, J, Shapiro, L. 登録日 2022-09-27 公開日 2023-02-08 最終更新日 2023-03-08 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Structures of LRP2 reveal a molecular machine for endocytosis. Cell, 186, 2023
8EOF	Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_PG) 分子名称: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Vishwakarm, R.K, Murakami, K.S. 登録日 2022-10-03 公開日 2023-02-01 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
4CCO	60S ribosomal protein L8 histidine hydroxylase (NO66 S373C) in complex with Mn(II), N-oxalylglycine (NOG) and 60S ribosomal protein L8 (RPL8 G214C) peptide fragment (complex-3) 分子名称: 1,2-ETHANEDIOL, 60S RIBOSOMAL PROTEIN L8, BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HISTIDYL-HYDROXYLASE NO66, ... 著者 Chowdhury, R, Schofield, C.J. 登録日 2013-10-23 公開日 2014-05-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Ribosomal oxygenases are structurally conserved from prokaryotes to humans. Nature, 510, 2014
4ZKK	The novel double-fold structure of d(GCATGCATGC) 分子名称: COBALT (II) ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*AP*TP*GP*C)-3') 著者 Thirugnanasambandam, A, Karthik, S, Mandal, P.K, Gautham, N. 登録日 2015-04-30 公開日 2015-10-14 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.801 Å) 主引用文献 The novel double-folded structure of d(GCATGCATGC): a possible model for triplet-repeat sequences Acta Crystallogr.,Sect.D, 71, 2015
8EM4	Cryo-EM structure of LRP2 at pH 7.5 分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Beenken, A, Cerutti, G, Brasch, J, Fitzpatrick, A.W, Barasch, J, Shapiro, L. 登録日 2022-09-26 公開日 2023-02-08 最終更新日 2023-03-08 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Structures of LRP2 reveal a molecular machine for endocytosis. Cell, 186, 2023
8EHQ	Mycobacterium tuberculosis paused transcription complex with Bacillus subtilis NusG 分子名称: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Vishwakarma, R.K, Murakami, K.S. 登録日 2022-09-14 公開日 2023-02-01 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
4ZG1	Crystal structure of a nanobody raised against KDM5B 分子名称: NB17 著者 Wiuf, A, Kristensen, O, Gajhede, M. 登録日 2015-04-22 公開日 2015-05-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure and binding properties of a cameloid nanobody raised against KDM5B. Acta Crystallogr.,Sect.F, 71, 2015
4ZGD	Mutant R157A of Fe-Type Nitrile Hydratase from Comamonas testosteroni Ni1 分子名称: FE (III) ION, Nitrile hydratase alpha subunit, Nitrile hydratase beta subunit 著者 Wu, R, Martinez, S, Holz, R, Liu, D. 登録日 2015-04-22 公開日 2015-07-01 最終更新日 2015-07-08 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Analyzing the catalytic role of active site residues in the Fe-type nitrile hydratase from Comamonas testosteroni Ni1. J.Biol.Inorg.Chem., 20, 2015

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