PDB: 217686 件ウェブページステータス検索Chemie searchBIRD

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4TLN	BINDING OF HYDROXAMIC ACID INHIBITORS TO CRYSTALLINE THERMOLYSIN SUGGESTS A PENTACOORDINATE ZINC INTERMEDIATE IN CATALYSIS 分子名称: CALCIUM ION, L-LEUCYL-HYDROXYLAMINE, THERMOLYSIN, ... 著者 Matthews, B.W, Holmes, M.A. 登録日 1982-02-08 公開日 1982-05-26 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Binding of hydroxamic acid inhibitors to crystalline thermolysin suggests a pentacoordinate zinc intermediate in catalysis. Biochemistry, 20, 1981
4YHZ	Crystal structure of 304M3-B Fab in complex with H3K4me3 peptide 分子名称: Fab Heavy Chain, Fab Light Chain, GLYCEROL, ... 著者 Hattori, T, Dementieva, I.S, Montano, S.P, Koide, S. 登録日 2015-02-27 公開日 2016-02-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.304 Å) 主引用文献 Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation. Proc.Natl.Acad.Sci.USA, 113, 2016
1C6D	T4 LYSOZYME MUTANT C54T/C97A/L99A IN THE PRESENCE OF 16 ATM KRYPTON 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, KRYPTON, ... 著者 Quillin, M.L, Matthews, B.W. 登録日 1999-12-21 公開日 2000-10-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme. J.Mol.Biol., 302, 2000
8R47	AL amyloid fibril from the FOR010 light chain 分子名称: lambda 3 immunoglobulin light chain fragment, residues 4-116 著者 Pfeiffer, P.B, Banerjee, S, Schmidt, M, Faendrich, M. 登録日 2023-11-13 公開日 2024-06-26 実験手法 ELECTRON MICROSCOPY (2.25 Å) 主引用文献 Light chain mutations contribute to defining the fibril morphology in systemic AL amyloidosis. Nat Commun, 15, 2024
5J8Q	Crystal Structure of the Cysteine Desulfurase SufS of Bacillus subtilis 分子名称: ALANINE, Cysteine desulfurase SufS, PYRIDOXAL-5'-PHOSPHATE 著者 Altegoer, F, Bange, G. 登録日 2016-04-08 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.702 Å) 主引用文献 Crystal Structure of Bacillus subtilis Cysteine Desulfurase SufS and Its Dynamic Interaction with Frataxin and Scaffold Protein SufU. Plos One, 11, 2016
7BM2	Crystal structure of the DNA-binding protein RemA from Geobacillus thermodenitrificans 分子名称: Putative regulatory protein GTNG_1019, SULFATE ION 著者 Altegoer, F, Mrusek, D, Bange, G. 登録日 2021-01-19 公開日 2021-08-25 最終更新日 2021-10-13 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Structural and functional characterization of the bacterial biofilm activator RemA. Nat Commun, 12, 2021
6MHQ	Structure of connexin-46 intercellular gap junction channel at 3.4 angstrom resolution by cryoEM 分子名称: Gap junction alpha-3 protein, connexin-46 著者 Myers, J.B, Reichow, S.L. 登録日 2018-09-18 公開日 2018-12-12 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of native lens connexin 46/50 intercellular channels by cryo-EM. Nature, 564, 2018
6MIP	Crystal structure of Taf14 YEATS domain G82A mutant 分子名称: DI(HYDROXYETHYL)ETHER, Transcription initiation factor TFIID subunit 14 著者 Klein, B.J, Andrews, F.H, Kutateladze, T.G. 登録日 2018-09-19 公開日 2018-11-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into the pi-pi-pi stacking mechanism and DNA-binding activity of the YEATS domain. Nat Commun, 9, 2018
7S16	Crystal structure of alpha-COP-WD40 domain R57A mutant 分子名称: Coatomer subunit alpha, SODIUM ION 著者 Dey, D, Singh, S, Khan, S, Martin, M, Schnicker, N, Gakhar, L, Pierce, B, Hasan, S.S. 登録日 2021-09-01 公開日 2022-02-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.24 Å) 主引用文献 An extended motif in the SARS-CoV-2 spike modulates binding and release of host coatomer in retrograde trafficking Commun Biol, 5, 2022
1C6E	T4 LYSOZYME MUTANT C54T/C97A/L99A IN THE PRESENCE OF 2 ATM XENON 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, PROTEIN (LYSOZYME), ... 著者 Quillin, M.L, Matthews, B.W. 登録日 1999-12-21 公開日 2000-10-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme. J.Mol.Biol., 302, 2000
7BIF	Crystal structure of v22WRAP-T, a 7-bladed designer protein 分子名称: v22WRAP-T 著者 Lee, X.Y, Mylemans, B, Laier, I, Voet, A.R.D. 登録日 2021-01-12 公開日 2021-09-22 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structure and stability of the designer protein WRAP-T and its permutants. Sci Rep, 11, 2021
8GLZ	Crystal structure of T252E-CYP199A4 in complex with 4-hydroxybenzoic acid. Crystal was initially co-crystallised with 4-methoxybenzoic acid and soaked with 4 mM hydrogen peroxide 分子名称: CHLORIDE ION, Cytochrome P450, P-HYDROXYBENZOIC ACID, ... 著者 Lee, J.H.Z, Bruning, J.B, Bell, S.G. 登録日 2023-03-23 公開日 2023-12-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 An In Crystallo Reaction with an Engineered Cytochrome P450 Peroxygenase. Chemistry, 30, 2024
1C9S	CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA-BINDING ATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNA CONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES 分子名称: SINGLE STRANDED RNA (55-MER), TRP RNA-BINDING ATTENUATION PROTEIN, TRYPTOPHAN 著者 Antson, A.A, Dodson, E.J, Dodson, G.G, Greaves, R.B, Chen, X.-P, Gollnick, P. 登録日 1999-08-03 公開日 1999-09-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Nature, 401, 1999
8GM2	Crystal structure of T252E-CYP199A4 in complex with 4-methoxybenzoic acid soaked with 2 mM hydrogen peroxide 分子名称: 4-METHOXYBENZOIC ACID, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE 著者 Lee, J.H.Z, Bruning, J.B, Bell, S.G. 登録日 2023-03-24 公開日 2023-12-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 An In Crystallo Reaction with an Engineered Cytochrome P450 Peroxygenase. Chemistry, 30, 2024
7RT9	Crystal structures of human PYY and NPY 分子名称: 4A3B2-A Fab heavy chain, 4A3B2-A Fab light chain, GLYCEROL, ... 著者 Langley, D.B, Christ, D. 登録日 2021-08-12 公開日 2022-03-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structures of human neuropeptide Y (NPY) and peptide YY (PYY). Neuropeptides, 92, 2022
4YS3	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. 登録日 2015-03-16 公開日 2015-10-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015
1C6F	T4 LYSOZYME MUTANT C54T/C97A/L99A IN THE PRESENCE OF 32 ATM ARGON 分子名称: ARGON, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... 著者 Quillin, M.L, Matthews, B.W. 登録日 1999-12-21 公開日 2000-10-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme. J.Mol.Biol., 302, 2000
1C6P	T4 LYSOZYME MUTANT C54T/C97A IN THE PRESENCE OF 8 ATM ARGON 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, PROTEIN (LYSOZYME) 著者 Quillin, M.L, Matthews, B.W. 登録日 1999-12-21 公開日 2000-10-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme. J.Mol.Biol., 302, 2000
5FQ4	Crystal structure of the lipoprotein BT2263 from Bacteroides thetaiotaomicron 分子名称: CALCIUM ION, PUTATIVE LIPOPROTEIN 著者 Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B. 登録日 2015-12-04 公開日 2016-12-14 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature, 541, 2017
5J2Q	HIV-1 reverse transcriptase in complex with DNA that has incorporated a mismatched EFdA-MP at the N-(pre-translocation) site 分子名称: 2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate), DNA (27-MER), DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(6FM)P*(6FM))-3'), ... 著者 Salie, Z.L, Kirby, K.A, Sarafianos, S.G. 登録日 2016-03-29 公開日 2016-08-03 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.789 Å) 主引用文献 Structural basis of HIV inhibition by translocation-defective RT inhibitor 4'-ethynyl-2-fluoro-2'-deoxyadenosine (EFdA). Proc.Natl.Acad.Sci.USA, 113, 2016
5IWA	Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic 分子名称: (2S,3S)-2-{[(2S)-3-(2-amino-1H-imidazol-5-yl)-2-{[(2S,4S)-5-(carbamoyloxy)-4-hydroxy-2-({[(2S,3S)-3-hydroxypiperidin-2-yl]carbonyl}amino)pentanoyl]amino}propanoyl]amino}-3-(2-chloro-1H-imidazol-5-yl)-3-hydroxypropanoic acid, 16S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Schedlbauer, A, Kaminishi, T, Ochoa-Lizarralde, B, Chieko, N, Masahito, K, Takemoto, C, Yokoyama, S, Connell, S.R, Fucini, P. 登録日 2016-03-22 公開日 2016-04-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. Proc.Natl.Acad.Sci.USA, 113, 2016
3JX7	Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog 分子名称: DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3'), alkylpurine DNA glycosylase AlkD 著者 Rubinson, E.H, Eichman, B.F. 登録日 2009-09-18 公開日 2010-09-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 2010
7BBT	Structure of cytochrome c in complex with a p-benzyl-sulfonato-calix[8]arene-PEG pseudorotaxane 分子名称: 4-[[49,50,51,52,53,54,55,56-octahydroxy-11,17,23,29,35,41,47-heptakis[(4-sulfonatophenyl)methyl]-5-nonacyclo[43.3.1.13,7.19,13.115,19.121,25.127,31.133,37.139,43]hexapentaconta-1(49),3,5,7(56),9,11,13(55),15,17,19(54),21,23,25(53),27,29,31(52),33,35,37(51),39,41,43(50),45,47-tetracosaenyl]methyl]benzenesulfonate, Cytochrome c iso-1, HEME C, ... 著者 Mockler, N.M, Ramberg, K, Guagnini, F, Raston, C.L, Crowley, P.B. 登録日 2020-12-18 公開日 2021-10-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.023 Å) 主引用文献 Noncovalent Protein-Pseudorotaxane Assembly Incorporating an Extended Arm Calix[8]arene with alpha-Helical Recognition Properties. Cryst.Growth Des., 21, 2021
4YUH	Multiconformer synchrotron model of CypA at 150 K 分子名称: Peptidyl-prolyl cis-trans isomerase A 著者 Keedy, D.A, Kenner, L.R, Warkentin, M, Woldeyes, R.A, Thompson, M.C, Brewster, A.S, Van Benschoten, A.H, Baxter, E.L, Hopkins, J.B, Uervirojnangkoorn, M, McPhillips, S.E, Song, J, Mori, R.A, Holton, J.M, Weis, W.I, Brunger, A.T, Soltis, M, Lemke, H, Gonzalez, A, Sauter, N.K, Cohen, A.E, van den Bedem, H, Thorne, R.E, Fraser, J.S. 登録日 2015-03-18 公開日 2015-10-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. Elife, 4, 2015
1C6G	T4 LYSOZYME MUTANT C54T/C97A/L99A IN THE PRESENCE OF 4 ATM KRYPTON 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, KRYPTON, ... 著者 Quillin, M.L, Matthews, B.W. 登録日 1999-12-21 公開日 2000-10-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme. J.Mol.Biol., 302, 2000

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