PDB: 45176 件ウェブページステータス検索Chemie searchBIRD

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4V84	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
2WK6	Structural features of native human thymidine phosphorylase and in complex with 5-iodouracil 分子名称: 5-IODOURACIL, THYMIDINE PHOSPHORYLASE 著者 Mitsiki, E, Papageorgiou, A.C, Iyer, S, Thiyagarajan, N, Prior, S.H, Sleep, D, Finnis, C, Acharya, K.R. 登録日 2009-06-05 公開日 2009-07-07 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of Native Human Thymidine Phosphorylase and in Complex with 5-Iodouracil. Biochem.Biophys.Res.Commun., 386, 2009
4V9G	RC-LH1-PufX dimer complex from Rhodobacter sphaeroides 分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (II) ION, ... 著者 Qian, P, Papiz, M.Z, Jackson, P.J, Brindley, A.A, Ng, I.W, Olsen, J.D, Dickman, M.J, Bullough, P.A, Hunter, C.N. 登録日 2013-02-21 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (7.78 Å) 主引用文献 Three-Dimensional Structure of the Rhodobacter sphaeroides RC-LH1-PufX Complex: Dimerization and Quinone Channels Promoted by PufX. Biochemistry, 52, 2013
4V9B	Crystal Structure of the 70S ribosome with tigecycline. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Jenner, L, Yusupov, M, Yusupova, G. 登録日 2012-07-18 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis. Proc.Natl.Acad.Sci.USA, 110, 2013
4V6K	Structural insights into cognate vs. near-cognate discrimination during decoding. 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Agirrezabala, X, Schreiner, E, Trabuco, L.G, Lei, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-01-07 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (8.25 Å) 主引用文献 Structural insights into cognate versus near-cognate discrimination during decoding. Embo J., 30, 2011
2WMP	Structure of the E. coli chaperone PapD in complex with the pilin domain of the PapGII adhesin 分子名称: CHAPERONE PROTEIN PAPD, PAPG PROTEIN 著者 Ford, B.A, Verger, D, Elam, J.S, Dodson, K.W, Pinkner, J.S, Hultgren, S.J. 登録日 2009-07-02 公開日 2010-08-25 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of the Papd-Papgii Pilin Complex Reveals an Open and Flexible P5 Pocket. J.Bacteriol., 194, 2012
4V7T	Crystal structure of the E. coli ribosome bound to chloramphenicol. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Dunkle, J.A, Xiong, L, Mankin, A.S, Cate, J.H.D. 登録日 2010-08-14 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1942 Å) 主引用文献 Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action. Proc.Natl.Acad.Sci.USA, 107, 2010
4V8E	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2011-12-07 公開日 2014-07-09 最終更新日 2019-07-03 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012
4V6U	Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10P, ... 著者 Armache, J.-P, Anger, A.M, Marquez, V, Frankenberg, S, Froehlich, T, Villa, E, Berninghausen, O, Thomm, M, Arnold, G.J, Beckmann, R, Wilson, D.N. 登録日 2012-08-09 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Promiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution. Nucleic Acids Res., 41, 2013
4V6G	Initiation complex of 70S ribosome with two tRNAs and mRNA. 分子名称: 16S RRNA (E.COLI NUMBERING), 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Jenner, L.B, Yusupova, G, Yusupov, M. 登録日 2009-07-10 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat.Struct.Mol.Biol., 17, 2010
2WL0	HIV-1 Protease Inhibitors Containing a Tertiary Alcohol in the Transition-State Mimic with Improved Cell-Based Antiviral Activity 分子名称: METHYL [(1S)-1-({2-[(3S)-3-BENZYL-3-HYDROXY-4-{[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]AMINO}-4-OXOBUTYL]-2-(4-PYRIDIN-2-YLBENZYL)HYDRAZINO}CARBONYL)-2,2-DIMETHYLPROPYL]CARBAMATE, PROTEASE 著者 Mahalingam, A.K, Axelsson, L, Ekegren, J.K, Wannberg, J, Kihlstrom, J, Wallberg, H, Samuelsson, B, Larhed, M, Hallberg, A, Unge, T. 登録日 2009-06-19 公開日 2009-12-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 HIV-1 Protease Inhibitors with a Transition-State Mimic Comprising a Tertiary Alcohol: Improved Antiviral Activity in Cells. J.Med.Chem., 53, 2010
4V89	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Zhou, J, Lancaster, L, Trakhanov, S, Noller, H.F. 登録日 2011-11-17 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome. Rna, 18, 2012
4V8K	Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form 分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ... 著者 Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K. 登録日 2013-11-22 公開日 2014-07-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.006 Å) 主引用文献 Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom Nature, 508, 2014
3QW5	Crystal structure of the protease domain of Botulinum Neurotoxin Serotype A with a peptide inhibitor RRGF 分子名称: Botulinum neurotoxin type A, SULFATE ION, ZINC ION, ... 著者 Kumaran, D, Swaminathan, S. 登録日 2011-02-26 公開日 2012-02-08 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Peptide inhibitors of botulinum neurotoxin serotype A: design, inhibition, cocrystal structures, structure-activity relationship and pharmacophore modeling. Acta Crystallogr.,Sect.D, 68, 2012
4V75	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
4V7J	Structure of RelE nuclease bound to the 70S ribosome (precleavage state) 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E. 登録日 2009-11-02 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell(Cambridge,Mass.), 139, 2009
4V8M	High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome 分子名称: 18S RRNA OF THE SMALL RIBOSOMAL SUBUNIT, 40S RIBOSOMAL PROTEIN S10, PUTATIVE, ... 著者 Hashem, Y, des Georges, A, Fu, J, Buss, S.N, Jossinet, F, Jobe, A, Zhang, Q, Liao, H.Y, Grassucci, R.A, Bajaj, C, Westhof, E, Madison-Antenucci, S, Frank, J. 登録日 2012-12-09 公開日 2014-07-09 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (5.57 Å) 主引用文献 High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome. Nature, 494, 2013
4V97	Crystal structure of the bacterial ribosome ram mutation G299A. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2012-04-06 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.516 Å) 主引用文献 Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state. Proc.Natl.Acad.Sci.USA, 110, 2013
3QWZ	Crystal structure of FAF1 UBX-p97N-domain complex 分子名称: FAS-associated factor 1, Transitional endoplasmic reticulum ATPase 著者 Park, J.K, Jeon, H, Lee, J.J, Kim, K.H, Lee, K.J, Kim, E.E. 登録日 2011-02-28 公開日 2012-05-09 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Dissection of the interaction between FAF1 UBX and p97 To be Published
4V7B	Visualization of two tRNAs trapped in transit during EF-G-mediated translocation 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Ramrath, D.J.F, Lancaster, L, Sprink, T, Mielke, T, Loerke, J, Noller, H.F, Spahn, C.M.T. 登録日 2013-10-27 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation. Proc.Natl.Acad.Sci.USA, 110, 2013
4V7Q	Atomic model of an infectious rotavirus particle 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Core scaffold protein, ... 著者 Settembre, E.C, Chen, J.Z, Dormitzer, P.R, Grigorieff, N, Harrison, S.C. 登録日 2010-05-13 公開日 2014-07-09 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Atomic model of an infectious rotavirus particle. Embo J., 30, 2011
4V9P	Control of ribosomal subunit rotation by elongation factor G 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pulk, A, Cate, J.H.D. 登録日 2013-05-03 公開日 2014-07-09 最終更新日 2014-12-17 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Control of ribosomal subunit rotation by elongation factor G. Science, 340, 2013
2WKY	Crystal structure of the ligand-binding core of GluR5 in complex with the agonist 4-AHCP 分子名称: 3-(3-HYDROXY-7,8-DIHYDRO-6H-CYCLOHEPTA[D]ISOXAZOL-4-YL)-L-ALANINE, CHLORIDE ION, GLUTAMATE RECEPTOR, ... 著者 Naur, P, Gajhede, M, Kastrup, J.S. 登録日 2009-06-18 公開日 2009-07-21 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The Glutamate Receptor Glur5 Agonist (S)-2-Amino-3-(3-Hydroxy-7,8-Dihydro-6H-Cyclohepta[D]Isoxazol-4-Yl)Propionic Acid and the 8-Methyl Analogue: Synthesis, Molecular Pharmacology, and Biostructural Characterization J.Med.Chem., 52, 2009
4V7X	Structure of the Thermus thermophilus ribosome complexed with erythromycin. 分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Bulkley, D.P, Innis, C.A, Blaha, G, Steitz, T.A. 登録日 2010-08-17 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Revisiting the structures of several antibiotics bound to the bacterial ribosome. Proc.Natl.Acad.Sci.USA, 107, 2010
2WKG	Nostoc punctiforme Debranching Enzyme (NPDE)(Native form) 分子名称: ALPHA AMYLASE, CATALYTIC REGION 著者 Dumbrepatil, A.B, Choi, J.H, Song, H.N, Park, K.H, Woo, E.J. 登録日 2009-06-11 公開日 2009-09-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Features of the Nostoc Punctiforme Debranching Enzyme Reveal the Basis of its Mechanism and Substrate Specificity. Proteins, 78, 2010

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