PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5XOW	Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'A7' on the target strand 分子名称: DNA (5'-D(P*(TD)P*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), MAGNESIUM ION, RNA (5'-R(P*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*AP*CP*CP*UP*CP*G)-3'), ... 著者 Sheng, G, Wang, J, Zhao, H, Wang, Y. 登録日 2017-05-31 公開日 2017-10-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.902 Å) 主引用文献 Structure/cleavage-based insights into helical perturbations at bulge sites within T. thermophilus Argonaute silencing complexes Nucleic Acids Res., 45, 2017
8TDR	Crystal structure of the methyltransferase domain of DNMT3A homotetramer 分子名称: DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE 著者 Lu, J.W, Song, J.K. 登録日 2023-07-04 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.32 Å) 主引用文献 Crystal structure of the homo-tetrameric DNMT3A methyltransferase domain To Be Published
8TE3	Crystal structure of the methyltransferase domain of R882C/R676K DNMT3A homotetramer 分子名称: DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE 著者 Lu, J.W, Song, J.K. 登録日 2023-07-05 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structure of the homo-tetrameric DNMT3A methyltransferase domain(R882C/R676K) To Be Published
8TE1	Crystal structure of the methyltransferase domain of R882H/R676K DNMT3A homotetramer 分子名称: DNA (cytosine-5)-methyltransferase 3A, GLYCEROL, L(+)-TARTARIC ACID, ... 著者 Lu, J.W, Song, J.K. 登録日 2023-07-05 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Crystal structure of the methyltransferase domain of R882H/R676K DNMT3A homotetramer To Be Published
8TE4	Crystal structure of the methyltransferase domain of R882H/N879A DNMT3A homotetramer 分子名称: DNA (cytosine-5)-methyltransferase 3A, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE 著者 Lu, J.W, Song, J.K. 登録日 2023-07-05 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal structure of the methyltransferase domain of R882H/N879A DNMT3A homotetramer To Be Published
7ATZ	G-quadruplex with V-shaped loop from the first repeat of KCNN4 minisatellite 分子名称: DNA (5'-D(*GP*GP*TP*CP*TP*GP*AP*GP*GP*GP*AP*GP*AP*GP*GP*GP*GP*CP*TP*GP*GP*GP*T)-3') 著者 Vianney, Y.M, Weisz, K. 登録日 2020-11-02 公開日 2021-04-21 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 First Tandem Repeat of a Potassium Channel KCNN4 Minisatellite Folds into a V-Loop G-Quadruplex Structure. Biochemistry, 60, 2021
7BY0	The cryo-EM structure of CENP-A nucleosome in complex with the phosphorylated CENP-C 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Ariyoshi, M, Makino, F, Fukagawa, T. 登録日 2020-04-21 公開日 2021-02-10 最終更新日 2021-03-10 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Cryo-EM structure of the CENP-A nucleosome in complex with phosphorylated CENP-C. Embo J., 40, 2021
3IIN	Plasticity of the kink turn structural motif 分子名称: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*GP*AP*CP*C)-D(P*AP*GP*A)-R(P*CP*GP*GP*CP*C)-3'), DNA/RNA (5'-R(*CP*A)-D(P*T)-3'), Group I intron, ... 著者 Lipchock, S.V, Strobel, S.A, Antonioli, A.H, Cochrane, J.C. 登録日 2009-08-02 公開日 2010-03-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (4.18 Å) 主引用文献 Plasticity of the RNA kink turn structural motif. Rna, 16, 2010
3WAA	The nucleosome containing human H2A.Z.2 分子名称: DNA (146-MER), Histone H2A.V, Histone H2B type 1-J, ... 著者 Horikoshi, N, Sato, K, Shimada, K, Arimura, Y, Osakabe, A, Tachiwana, H, Iwasaki, W, Kagawa, W, Harata, M, Kimura, H, Kurumizaka, H. 登録日 2013-04-30 公開日 2013-12-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2 Acta Crystallogr.,Sect.D, 69, 2013
7MOP	Cryo-EM structure of human HUWE1 in complex with DDIT4 分子名称: DNA damage-inducible transcript 4 protein, E3 ubiquitin-protein ligase HUWE1 著者 Hunkeler, M, Fischer, E.S. 登録日 2021-05-03 公開日 2021-07-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Solenoid architecture of HUWE1 contributes to ligase activity and substrate recognition. Mol.Cell, 81, 2021
1AFZ	SOLUTION NMR STRUCTURE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE FROM THE HUMAN N-RAS PROTOONCOGENE ENCODING FOR AMINO ACIDS 11-13 OF P21, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*GP*TP*GP*GP*TP*G)-3') 著者 Zegar, I.S, Stone, M.P. 登録日 1997-03-18 公開日 1997-08-20 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an oligodeoxynucleotide containing the human N-ras codon 12 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects. Chem.Res.Toxicol., 9, 1996
8P6B	Ruthenium complex bound to an antiparallel G-quadruplex 分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), POTASSIUM ION, Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione 著者 McQuaid, K.T, Cardin, C.J. 登録日 2023-05-25 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Ruthenium complex bound to an antiparallel G-quadruplex To Be Published
8PSI	G-quadruplex with a 1-nt V-shaped loop from a G-rich sequence with five G-runs 分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3') 著者 Vianney, Y.M, Schroeder, N, Jana, J, Weisz, K. 登録日 2023-07-13 公開日 2023-09-27 最終更新日 2023-10-18 実験手法 SOLUTION NMR 主引用文献 Showcasing Different G-Quadruplex Folds of a G-Rich Sequence: Between Rule-Based Prediction and Butterfly Effect. J.Am.Chem.Soc., 145, 2023
8PSC	Three-layered basket-type G-quadruplex from a G-rich sequence with five G-runs 分子名称: DNA (5'-D(*AP*GP*(BG)P*GP*TP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3') 著者 Vianney, Y.M, Schroeder, N, Jana, J, Weisz, K. 登録日 2023-07-13 公開日 2023-09-27 最終更新日 2023-10-18 実験手法 SOLUTION NMR 主引用文献 Showcasing Different G-Quadruplex Folds of a G-Rich Sequence: Between Rule-Based Prediction and Butterfly Effect. J.Am.Chem.Soc., 145, 2023
8PSB	Three-layered parallel G-quadruplex with snapback loop from a G-rich sequence with five G-runs 分子名称: DNA (5'-D(*AP*GP*GP*GP*TP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*GP*AP*CP*GP*GP*GP*T)-3') 著者 Vianney, Y.M, Schroeder, N, Jana, J, Chojetzki, G, Weisz, K. 登録日 2023-07-13 公開日 2023-09-27 最終更新日 2023-10-25 実験手法 SOLUTION NMR 主引用文献 Showcasing Different G-Quadruplex Folds of a G-Rich Sequence: Between Rule-Based Prediction and Butterfly Effect. J.Am.Chem.Soc., 145, 2023
8R4E	Hybrid-1R G-quadruplex with a +(lpp) loop progression 分子名称: DNA (27-MER) 著者 Jana, J, Vianney, Y.M, Weisz, K. 登録日 2023-11-13 公開日 2023-12-27 最終更新日 2024-01-31 実験手法 SOLUTION NMR 主引用文献 Impact of loop length and duplex extensions on the design of hybrid-type G-quadruplexes. Chem.Commun.(Camb.), 60, 2024
8R4W	(3+1) hybrid-2 G-quadruplex with a -(llp) loop progression 分子名称: DNA (25-MER) 著者 Jana, J, Vianney, Y.M, Weisz, K. 登録日 2023-11-14 公開日 2023-12-27 最終更新日 2024-01-31 実験手法 SOLUTION NMR 主引用文献 Impact of loop length and duplex extensions on the design of hybrid-type G-quadruplexes. Chem.Commun.(Camb.), 60, 2024
8Q3E	High Resolution Structure of Nucleosome Core with Bound Foamy Virus GAG Peptide 分子名称: DNA (145-MER), GLY-GLY-TYR-ASN-LEU-ARG-PRO-ARG-THR-TYR-GLN-PRO-GLN-ARG-TYR-GLY-GLY-GLY, Histone H2A type 1-B/E, ... 著者 De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. 登録日 2023-08-04 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.174 Å) 主引用文献 Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
8Q3M	Structure of Nucleosome Core with a Bound Kaposi Sarcoma Associated Herpesvirus LANA Peptide Having a Methionine to Ornithine Substitution 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... 著者 De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. 登録日 2023-08-04 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.503 Å) 主引用文献 Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
8Q36	Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Foamy Virus GAG Peptide-Au[I] Compound) 分子名称: DNA (145-MER), GAG structural protein, Histone H2A type 1-B/E, ... 著者 De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A. 登録日 2023-08-03 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.604 Å) 主引用文献 Viral peptide conjugates for metal-warhead delivery to chromatin. Rsc Adv, 14, 2024
5VX7	Solution NMR structure of the BRCT domain of S. cerevisiae Rev1 分子名称: DNA repair protein REV1 著者 Xu, C, Cui, G, Botuyan, M.V, Mer, G. 登録日 2017-05-23 公開日 2018-01-31 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of the BRCT domain of S. cerevisiae Rev1 To Be Published
7OQT	G-quadruplex structure of the C. elegans telomeric repeat: A two tetrads basket type conformation stabilised by a Hoogsteen C-T base-pair 分子名称: DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*G)-3'), POTASSIUM ION 著者 Marquevielle, J, De Rache, A, Amrane, S. 登録日 2021-06-04 公開日 2022-06-22 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 G-quadruplex structure of the C. elegans telomeric repeat: a two tetrads basket type conformation stabilized by a non-canonical C-T base-pair. Nucleic Acids Res., 50, 2022
7O1H	Hybrid-2R quadruplex-duplex with (-p-p-l) topology and 3 syn residues 分子名称: DNA (31-MER) 著者 Mohr, S, Vianney, Y.M, Weisz, K. 登録日 2021-03-29 公開日 2021-05-19 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Expanding the Topological Landscape by a G-Column Flip of a Parallel G-Quadruplex. Chemistry, 27, 2021
6H3R	Crystal structure of Smad2 without exon -MH1 bound to the CAGAC site. 分子名称: DNA (5'-D(P*GP*AP*GP*TP*GP*TP*CP*TP*GP*CP*AP*GP*AP*CP*AP*CP*TP*C)-3'), Mothers against decapentaplegic homolog, ZINC ION 著者 Kaczmarska, Z, Marquez, J.A, Macias, M.J. 登録日 2018-07-19 公開日 2019-09-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural basis for distinct roles of SMAD2 and SMAD3 in FOXH1 pioneer-directed TGF-beta signaling Genes Dev., 2020
4NW2	Tandem chromodomains of human CHD1 in complex with Influenza virus NS1 C-terminal tail trimethylated at K229 分子名称: Chromodomain-helicase-DNA-binding protein 1, GLYCEROL, Nonstructural protein 1, ... 著者 Qin, S, Tempel, W, Xu, C, El Bakkouri, M, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2013-12-05 公開日 2014-01-29 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for histone mimicry and hijacking of host proteins by influenza virus protein NS1. Nat Commun, 5, 2014

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