PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

6B0D	An E. coli DPS protein from ferritin superfamily 分子名称: DNA protection during starvation protein, FORMIC ACID, SODIUM ION 著者 Rui, W, Ruslan, S, Ronan, K, Adam, J.S. 登録日 2017-09-14 公開日 2018-09-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallogr D Struct Biol, 74, 2018
4QJV	The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis 分子名称: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION 著者 Hirata, A, Murakami, K.S. 登録日 2014-06-05 公開日 2014-10-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.601 Å) 主引用文献 The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration Nat Commun, 5, 2014
8Q3I	Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State I 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Koval, T, Krasny, L, Dohnalek, J, Kouba, T. 登録日 2023-08-04 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.11 Å) 主引用文献 Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
8YDC	Crystal structure of a hammerhead ribozyme with pseudoknot 分子名称: DNA/RNA (5'-R(*AP*CP*AP*UP*GP*UP*CP*U)-D(P*C)-R(P*UP*GP*GP*GP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, ribozyme strand 著者 Liu, Y, Zhan, X. 登録日 2024-02-20 公開日 2024-08-21 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 The structure and catalytic mechanism of a pseudoknot-containing hammerhead ribozyme. Nat Commun, 15, 2024
6F6W	Structure of Mycobacterium smegmatis RNA polymerase core 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Kouba, T, Barvik, I, Krasny, L. 登録日 2017-12-06 公開日 2018-12-19 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.81 Å) 主引用文献 The Core and Holoenzyme Forms of RNA Polymerase fromMycobacterium smegmatis. J. Bacteriol., 201, 2019
6W5I	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class01) 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. 登録日 2020-03-13 公開日 2021-03-31 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (6.9 Å) 主引用文献 Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
6W5N	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class05) 分子名称: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. 登録日 2020-03-13 公開日 2021-03-31 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (6 Å) 主引用文献 Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
6W5M	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class02) 分子名称: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. 登録日 2020-03-13 公開日 2021-03-31 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
2M4K	Solution structure of the delta subunit of RNA polymerase from Bacillus subtilis 分子名称: DNA-directed RNA polymerase subunit delta 著者 Papouskova, V, Novacek, J, Kaderavek, P, Zidek, L, Rabatinova, A, Sanderova, H, Krasny, L, Sklenar, V. 登録日 2013-02-07 公開日 2013-10-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis. Chembiochem, 14, 2013
3LTI	Crystal structure of the Escherichia coli RNA polymerase beta subunit beta2-betai4 domains 分子名称: DNA-directed RNA polymerase subunit beta 著者 Darst, S.A, Opalka, N. 登録日 2010-02-16 公開日 2010-10-20 最終更新日 2012-02-22 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. Plos Biol., 8, 2010
8PV9	Structure of DPS determined by cryoEM at 100 keV 分子名称: DNA protection during starvation protein 著者 McMullan, G, Naydenova, K, Mihaylov, D, Peet, M.J, Wilson, H, Yamashita, K, Dickerson, J.L, Chen, S, Cannone, G, Lee, Y, Hutchings, K.A, Gittins, O, Sobhy, M, Wells, T, El-Gomati, M.M, Dalby, J, Meffert, M, Schulze-Briese, C, Henderson, R, Russo, C.J. 登録日 2023-07-17 公開日 2023-11-29 最終更新日 2023-12-06 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structure determination by cryoEM at 100 keV. Proc.Natl.Acad.Sci.USA, 120, 2023
8GPN	Human menin in complex with H3K79Me2 nucleosome 分子名称: DNA (177-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Lin, J, Yu, D, Lam, W.H, Dang, S, Zhai, Y, Li, X.D. 登録日 2022-08-26 公開日 2023-02-15 最終更新日 2023-03-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Menin "reads" H3K79me2 mark in a nucleosomal context. Science, 379, 2023
2PA8	X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase 分子名称: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ... 著者 Hirata, A, Murakami, K.S. 登録日 2007-03-27 公開日 2008-02-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
6Z6P	HDAC-PC-Nuc 分子名称: DNA (145-MER), HDA1 complex subunit 2, HDA1 complex subunit 3,HDA1 complex subunit 3, ... 著者 Lee, J.-H, Bollschweiler, D, Schaefer, T, Huber, R. 登録日 2020-05-28 公開日 2021-02-17 実験手法 ELECTRON MICROSCOPY (4.43 Å) 主引用文献 Structural basis for the regulation of nucleosome recognition and HDAC activity by histone deacetylase assemblies. Sci Adv, 7, 2021
7ZC4	Cryo-EM structure of POLRMT mutant. 分子名称: DNA-directed RNA polymerase, mitochondrial 著者 Das, H, Hallberg, B.M. 登録日 2022-03-25 公開日 2023-02-01 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.24 Å) 主引用文献 Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
6GCM	Escherichia coli DPS 分子名称: DNA protection during starvation protein 著者 Kovalenko, V.V, Loiko, N.G, Tereshkin, E.V, Tereshkina, K.B, Chulichkov, A.L, Popov, A.N, Krupyanskii, Y.F. 登録日 2018-04-18 公開日 2019-05-01 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Escherichia coli DPS To Be Published
1DZF	RPB5 from S.cerevisiae 分子名称: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 著者 Todone, F, Weinzierl, R.O.J, Brick, P, Onesti, S. 登録日 2000-02-25 公開日 2000-06-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structure of Rpb5, a Universal Eukaryotic RNA Polymerase Subunit and Transcription Factor Interaction Target Proc.Natl.Acad.Sci.USA, 97, 2000
6HT5	Oct4/Sox2:UTF1 structure 分子名称: DNA (5'-D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G)-3'), POU domain, ... 著者 Vahokoski, J, Meusch, D, Groves, M, Pogenberg, V, Wilmanns, M. 登録日 2018-10-03 公開日 2019-10-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.451 Å) 主引用文献 Oct4/Sox2:UTF1 structure To Be Published
4EXT	Structure of polymerase-interacting domain of human Rev1 in complex with translesional synthesis polymerase zeta 分子名称: DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B, peptide from DNA polymerase zeta catalytic subunit 著者 Liu, D.N, Ryu, K.S, Ko, J.S, Choi, B.S. 登録日 2012-05-01 公開日 2013-05-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Insights into the scaffold mechanism of human Rev1 in translesional synthesis revealed by structural studies on its polymerase-interacting domain To be Published
8DKC	P. gingivalis RNA Polymerase 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Liu, B, Bu, F. 登録日 2022-07-05 公開日 2023-06-21 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Cryo-EM Structure of Porphyromonas gingivalis RNA Polymerase. J.Mol.Biol., 436, 2024
3IHQ	Crystal Structure of Reduced C10S Spx in Complex with the Alpha C-terminal Domain of RNA Polymeras 分子名称: DNA-directed RNA polymerase subunit alpha, IMIDAZOLE, Regulatory protein spx 著者 Newberry, K.J, Brennan, R.G. 登録日 2009-07-30 公開日 2010-02-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Promoter recognition by a complex of Spx and the C-terminal domain of the RNA polymerase alpha subunit. Plos One, 5, 2010
2CSF	Solution structure of the second CUT domain of human SATB2 分子名称: DNA-binding protein SATB2 著者 Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-05-21 公開日 2005-11-21 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the second CUT domain of human SATB2 To be Published
2JW5	Polymerase Lambda BRCT domain 分子名称: DNA polymerase lambda 著者 Mueller, G.A, Moon, A.F, DeRose, E.F, Pedersen, L.C, London, R.E. 登録日 2007-10-05 公開日 2007-10-23 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Polymerase Lambda BRCT domain To be Published
4XUJ	Nucleosome core particle containing adducts from treatment with a thiomorpholine-substituted [(eta-6-p-cymene)Ru(3-hydroxy-2-pyridone)Cl] compound 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Adhireksan, Z, Davey, C.A. 登録日 2015-01-26 公開日 2016-01-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.18 Å) 主引用文献 Contrasting Cytotoxicity and Reactivity of RuII-Arene Complexes of Morpholine vs Thiomorpholine Substituted 3-Hydroxy-2-pyridone Ligands To Be Published
1EF4	SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM 分子名称: DNA-DIRECTED RNA POLYMERASE, ZINC ION 著者 Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG) 登録日 2000-02-07 公開日 2000-06-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA, 97, 2000

<631632633634635636637638639640641642643644645646>