PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7EGH	TFIID lobe C subcomplex 分子名称: DNA (45-MER), Transcription initiation factor TFIID subunit 1, Transcription initiation factor TFIID subunit 2, ... 著者 Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y. 登録日 2021-03-24 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021
6I84	Structure of transcribing RNA polymerase II-nucleosome complex 分子名称: DNA (158-MER), DNA (170-MER), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Farnung, L, Vos, S.M, Cramer, P. 登録日 2018-11-19 公開日 2019-01-02 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structure of transcribing RNA polymerase II-nucleosome complex. Nat Commun, 9, 2018
2NVY	RNA Polymerase II form II in 150 mM Mn+2 分子名称: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 45 kDa polypeptide, ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2006-11-13 公開日 2006-12-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
4QJF	X-ray crystal structure of Thermocuccus kodakarensis RNA polymerase Rpp4/Rpo7 (RpoF/RpoE) complex 分子名称: DNA-directed RNA polymerase, subunit E', subunit F 著者 Murakami, K.S. 登録日 2014-06-03 公開日 2014-10-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.312 Å) 主引用文献 Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure Nat.Commun., 2014
8IK5	Transcription factor LMX1a homeobox domain in complex with Wnt1 promoter 分子名称: DNA (5'-D(*CP*CP*AP*TP*AP*TP*TP*TP*AP*AP*TP*CP*TP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*AP*TP*TP*AP*AP*AP*TP*AP*TP*G)-3'), GLYCEROL, ... 著者 Lv, M.Q, Lin, L.Q. 登録日 2023-02-28 公開日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.989 Å) 主引用文献 Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain Febs J., 2024
5ODN	Salinibacter ruber Single-Strand Binding protein 分子名称: DNA (5'-D(*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*T)-3'), Single-stranded DNA-binding protein 著者 Pierechod, M, Rothweiler, U. 登録日 2017-07-06 公開日 2018-08-01 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.598 Å) 主引用文献 Salinibacter ruber Single-Strand Binding protein To Be Published
4BXZ	RNA Polymerase II-Bye1 complex 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. 登録日 2013-07-16 公開日 2013-09-11 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (4.8 Å) 主引用文献 Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue Proc.Natl.Acad.Sci.USA, 110, 2013
1GO3	Structure of an archeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex 分子名称: DNA-DIRECTED RNA POLYMERASE SUBUNIT E, DNA-DIRECTED RNA POLYMERASE SUBUNIT F 著者 Todone, F, Brick, P, Werner, F, Weinzierl, R.O.J, Onesti, S. 登録日 2001-10-17 公開日 2001-12-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure of an Archaeal Homolog of the Eukaryotic RNA Polymerase II Rpb4/Rpb7 Complex Mol.Cell, 8, 2001
2Y0S	Crystal structure of Sulfolobus shibatae RNA polymerase in P21 space group 分子名称: DNA-DIRECTED RNA POLYMERASE, DNA-DIRECTED RNA POLYMERASE SUBUNIT A'', DNA-DIRECTED RNA POLYMERASE SUBUNIT D, ... 著者 Wojtas, M, Peralta, B, Ondiviela, M, Mogni, M, Bell, S.D, Abrescia, N.G.A. 登録日 2010-12-07 公開日 2011-02-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit. Biochem. Soc. Trans., 39, 2011
3HKZ	The X-ray crystal structure of RNA polymerase from Archaea 分子名称: DNA-directed RNA polymerase subunit 13, DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit A'', ... 著者 Murakami, K.S. 登録日 2009-05-26 公開日 2009-06-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
3AYH	Crystal structure of the C17/25 subcomplex from S. pombe RNA Polymerase III 分子名称: DNA-directed RNA polymerase III subunit rpc8, DNA-directed RNA polymerase III subunit rpc9, SULFATE ION 著者 Ehara, H, Sekine, S, Yokoyama, S. 登録日 2011-05-06 公開日 2011-07-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.193 Å) 主引用文献 Crystal structure of the C17/25 subcomplex from Schizosaccharomyces pombe RNA polymerase III Protein Sci., 20, 2011
8PP6	human RYBP-PRC1 bound to H2AK118ub1 nucleosome 分子名称: DNA (215-MER), Histone H2A, Histone H2B, ... 著者 Ciapponi, M, Benda, C, Mueller, J. 登録日 2023-07-06 公開日 2024-04-03 最終更新日 2024-07-31 実験手法 ELECTRON MICROSCOPY (3.18 Å) 主引用文献 Structural basis of the histone ubiquitination read-write mechanism of RYBP-PRC1. Nat.Struct.Mol.Biol., 31, 2024
2CKZ	X-ray structure of RNA polymerase III subcomplex C17-C25. 分子名称: DNA-DIRECTED RNA POLYMERASE III 18 KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE III 25 KD POLYPEPTIDE 著者 Jasiak, A.J, Armache, K.-J, Martens, B, Jansen, R.-P, Cramer, P. 登録日 2006-04-24 公開日 2006-07-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural Biology of RNA Polymerase III: Subcomplex C17/-C25 X-Ray Structure and 11-Subunit Enzyme Model Mol.Cell, 23, 2006
7MBN	Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode02 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Park, S.H, Ayoub, A, Lee, Y.T, Dou, Y, Cho, U. 登録日 2021-04-01 公開日 2021-12-29 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY 主引用文献 Regulation of MLL1 Methyltransferase Activity in Two Distinct Nucleosome Binding Modes. Biochemistry, 61, 2022
7MBM	Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode01 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Park, S.H, Ayoub, A, Lee, Y.T, Dou, Y, Cho, U. 登録日 2021-04-01 公開日 2021-12-29 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY 主引用文献 Regulation of MLL1 Methyltransferase Activity in Two Distinct Nucleosome Binding Modes. Biochemistry, 61, 2022
8IKE	Transcription factors LMX1a mutant-R199A homeobox domain complex with Wnt1 promoter 分子名称: DNA (5'-D(*CP*CP*AP*TP*AP*TP*TP*TP*AP*AP*TP*CP*TP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*AP*TP*TP*AP*AP*AP*TP*AP*TP*G)-3'), LMX1A factor 著者 Lv, M.Q, Lin, L.Q. 登録日 2023-02-28 公開日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain Febs J., 2024
8ILW	Transcription factor LMX1a homeobox domain in complex with Pitx3 promoter 分子名称: DNA (5'-D(*CP*AP*AP*CP*AP*CP*TP*TP*AP*AP*TP*CP*CP*AP*AP*A)-3'), DNA (5'-D(*GP*TP*TP*TP*GP*GP*AP*TP*TP*AP*AP*GP*TP*GP*TP*T)-3'), LMX1A factor 著者 Lv, M.Q, Lin, L.Q. 登録日 2023-03-04 公開日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.712 Å) 主引用文献 Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain Febs J., 2024
3GFK	Crystal structure of Bacillus subtilis Spx/RNA polymerase alpha subunit C-terminal domain complex 分子名称: DNA-directed RNA polymerase subunit alpha, Regulatory protein spx 著者 Lamour, V, Westblade, L.F, Campbell, E.A, Darst, S.A. 登録日 2009-02-27 公開日 2009-03-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of the in vivo-assembled Bacillus subtilis Spx/RNA polymerase alpha subunit C-terminal domain complex J.Struct.Biol., 168, 2009
5ODP	Salinibacter ruber Single-Strand Binding protein D17K D71K mutant 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Single-stranded DNA-binding protein 著者 Pierechod, M, Rothweiler, U. 登録日 2017-07-06 公開日 2018-08-01 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.535 Å) 主引用文献 Salinibacter ruber Single-Strand Binding protein D17K D71K mutant To Be Published
3QT1	RNA polymerase II variant containing A Chimeric RPB9-C11 subunit 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Ruan, W, Lehmann, E, Thomm, M, Kostrewa, D, Cramer, P. 登録日 2011-02-22 公開日 2011-03-23 最終更新日 2017-08-23 実験手法 X-RAY DIFFRACTION (4.3 Å) 主引用文献 Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J.Biol.Chem., 286, 2011
6J4F	Crystal structure of the AtWRKY2 domain 分子名称: DNA (5'-D(*AP*GP*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*C)-3'), Probable WRKY transcription factor 2, ... 著者 Xu, Y.P, Xu, H, Wang, B, Su, X.D. 登録日 2019-01-08 公開日 2020-01-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of the AtWRKY2 domain To Be Published
2ISI	Crystal structure of Ape1 from Homo sapiens in a new crystal form complexed with a ligand 分子名称: DNA-(apurinic or apyrimidinic site) lyase, MAGNESIUM ION, PHOSPHATE ION 著者 Agarwal, R, Naidu, M.D. 登録日 2006-10-17 公開日 2006-10-31 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Crystal structure of hApe1 in a new crystal form with a bound ligand: implications on catalytic mechanism and its inhibition To be Published
6J4E	Crystal structure of the AtWRKY1 domain 分子名称: DNA (5'-D(*AP*GP*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*C)-3'), WRKY transcription factor 1, ... 著者 Xu, Y.P, Xu, H, Wang, B, Su, X.D. 登録日 2019-01-08 公開日 2020-01-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.126 Å) 主引用文献 Crystal structure of the AtWRKY1 domain To Be Published
3QQC	Crystal structure of archaeal Spt4/5 bound to the RNAP clamp domain 分子名称: DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a', DNA-directed RNA polymerase subunit A'', ... 著者 Martinez-Rucobo, F.W. 登録日 2011-02-15 公開日 2011-03-23 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. Embo J., 30, 2011
2C35	Subunits Rpb4 and Rpb7 of human RNA polymerase II 分子名称: DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19 KDA POLYPEPTIDE 著者 Meka, H, Werner, F, Cordell, S.C, Onesti, S, Brick, P. 登録日 2005-10-04 公開日 2005-11-18 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure and RNA Binding of the Rpb4/Rpb7 Subunits of Human RNA Polymerase II. Nucleic Acids Res., 33, 2005

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