PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8S51	RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S52	RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S55	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S54	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabber, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
2GHO	Recombinant Thermus aquaticus RNA polymerase for Structural Studies 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta' 著者 Lamour, V, Darst, S.A. 登録日 2006-03-27 公開日 2006-05-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (5 Å) 主引用文献 Recombinant Thermus aquaticus RNA Polymerase for Structural Studies. J.Mol.Biol., 359, 2006
7MCR	Human Apex/Ref1 homodimer formed under oxidative condition 分子名称: DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial, MAGNESIUM ION 著者 Nam, Y.W, Yang, S. 登録日 2021-04-02 公開日 2022-04-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Development of Novel Apurinic/Aprymidinic Endonuclease/Redox-factor 1 Inhibitors for the Treatment of Human Melanoma To Be Published
7MEV	Human Apex/Ref1 monomer with C138A mutation 分子名称: DNA-(apurinic or apyrimidinic site) endonuclease, mitochondrial, GLYCEROL, ... 著者 Nam, Y.W, Yang, S. 登録日 2021-04-07 公開日 2022-04-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The Development of Novel Apurinic/Aprymidinic Endonuclease/Redox-factor 1 Inhibitors for the Treatment of Human Melanoma To Be Published
6LGQ	The crystal complex structure of histidine kinase and response regulator 分子名称: DNA-binding response regulator, Histidine kinase KdpD 著者 Ming, Q.X. 登録日 2019-12-05 公開日 2020-12-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The crystal complex structure of histidine kinase and response regulator To Be Published
2FZA	Crystal structure of d(GCGGGAGC): the base-intercalated duplex 分子名称: 5'-D(*GP*(CBR)P*GP*GP*GP*AP*GP*C)-3', CALCIUM ION, SODIUM ION 著者 Kondo, J, Ciengshin, T, Juan, E.C.M, Mitomi, K, Takenaka, A. 登録日 2006-02-09 公開日 2007-01-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Crystal structure of d(gcGXGAgc) with X=G: a mutation at X is possible to occur in a base-intercalated duplex for multiplex formation Nucleosides Nucleotides Nucleic Acids, 25, 2006
3KZY	Crystal structure of SNAP-tag 分子名称: Methylated-DNA--protein-cysteine methyltransferase, ZINC ION 著者 Bannwarth, M, Schmitt, S, Pojer, F, Schiltz, M, Johnsson, K. 登録日 2009-12-09 公開日 2010-12-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 SNAP-tag structure To be Published
6DT8	Bacteriophage N4 RNA polymerase II elongation complex 1 分子名称: DNA (5'-D(P*AP*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*UP*GP*G)-3'), RNAP1, ... 著者 Molodtsov, V, Murakami, K.S. 登録日 2018-06-15 公開日 2018-07-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
6DTA	Bacteriophage N4 RNA polymerase II elongation complex 2 分子名称: DNA (5'-D(P*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Molodtsov, V, Murakami, K.S. 登録日 2018-06-15 公開日 2018-07-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
4TZ4	Crystal Structure of Human Cereblon in Complex with DDB1 and Lenalidomide 分子名称: DNA damage-binding protein 1, Protein cereblon, S-Lenalidomide, ... 著者 Chamberlain, P.P, Pagarigan, B, Delker, S, Leon, B, Riley, M. 登録日 2014-07-09 公開日 2014-08-06 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Structural Basis for Responsiveness to Thalidomide-Analog Drugs Defined by the Crystal Structure of the Human Cereblon:DDB1:Lenalidomide Complex To Be Published
7Q4U	Cryo-EM structure of Mycobacterium tuberculosis RNA polymerase holoenzyme octamer comprising sigma factor SigB 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Brodolin, K. 登録日 2021-11-02 公開日 2022-11-16 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.39 Å) 主引用文献 Structural basis of the mycobacterial stress-response RNA polymerase auto-inhibition via oligomerization Nat Commun, 14, 2023
8XMB	NTP-bound Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XMD	Pre-translocated Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XME	Backtracked Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XMC	Post-translocated Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
9BCU	Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 52 nt RNA 分子名称: DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit B, ... 著者 You, L, Ebright, R.H. 登録日 2024-04-09 公開日 2024-07-31 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Structural basis of archaeal FttA-dependent transcription termination To Be Published
9BCT	Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 44 nt RNA 分子名称: DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit B, ... 著者 You, L, Ebright, R.H. 登録日 2024-04-09 公開日 2024-07-31 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structural basis of archaeal FttA-dependent transcription termination To Be Published
4YM7	RNA polymerase I structure with an alternative dimer hinge 分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... 著者 Kostrewa, D, Kuhn, C.-D, Engel, C, Cramer, P. 登録日 2015-03-06 公開日 2015-09-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (5.5 Å) 主引用文献 An alternative RNA polymerase I structure reveals a dimer hinge. Acta Crystallogr.,Sect.D, 71, 2015
4ZH2	Crystal structure of Escherichia coli RNA polymerase in complex with CBR703 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Feng, Y, Ebright, R.H. 登録日 2015-04-24 公開日 2015-08-05 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4.204 Å) 主引用文献 Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles. Structure, 23, 2015
8IUE	RNA polymerase III pre-initiation complex melting complex 1 分子名称: DNA (74-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... 著者 Hou, H, Jin, Q, Ren, Y, Wang, Q, Xu, Y. 登録日 2023-03-24 公開日 2023-05-24 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structure of the SNAPc-bound RNA polymerase III preinitiation complex. Cell Res., 33, 2023
8IUH	RNA polymerase III pre-initiation complex open complex 1 分子名称: DNA (81-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... 著者 Hou, H, Jin, Q, Ren, Y, Wang, Q, Xu, Y. 登録日 2023-03-24 公開日 2023-05-24 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of the SNAPc-bound RNA polymerase III preinitiation complex. Cell Res., 33, 2023
6P18	Q21 transcription antitermination complex: loading complex 分子名称: DNA (67-MER) fragment carrying phage-21 pR' promoter and pause element, nontemplate strand, template strand, ... 著者 Yin, Z, Ebright, R.H. 登録日 2019-05-19 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of Q-dependent antitermination. Proc.Natl.Acad.Sci.USA, 116, 2019

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