PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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7CR6	Synechocystis Cas1-Cas2/prespacer binary complex 分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2 1, DNA (36-MER) 著者 Yu, Y, Chen, Q. 登録日 2020-08-12 公開日 2021-03-31 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.72 Å) 主引用文献 Mechanisms of spacer acquisition by sequential assembly of the adaptation module in Synechocystis. Nucleic Acids Res., 49, 2021
7CR8	Synechocystis Cas1-Cas2-prespacerL complex 分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2 1, DNA (36-MER) 著者 Yu, Y, Chen, Q. 登録日 2020-08-12 公開日 2021-03-31 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Mechanisms of spacer acquisition by sequential assembly of the adaptation module in Synechocystis. Nucleic Acids Res., 49, 2021
2I1Q	RadA Recombinase in complex with Calcium 分子名称: CALCIUM ION, DNA repair and recombination protein radA, MAGNESIUM ION, ... 著者 Qian, X, He, Y, Ma, X, Fodje, M.N, Grochulski, P, Luo, Y. 登録日 2006-08-14 公開日 2006-10-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Calcium Stiffens Archaeal Rad51 Recombinase from Methanococcus voltae for Homologous Recombination. J.Biol.Chem., 281, 2006
1H3G	Cyclomaltodextrinase from Flavobacterium sp. No. 92: from DNA sequence to protein structure 分子名称: CALCIUM ION, Cyclomaltodextrinase 著者 Fritzsche, H.B, Schwede, T, Jelakovic, S, Schulz, G.E. 登録日 2002-09-03 公開日 2003-08-14 最終更新日 2019-07-24 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Covalent and Three-Dimensional Structure of the Cyclodextrinase from Flavobacterium Sp. No. 92. Eur.J.Biochem., 270, 2003
1QZR	CRYSTAL STRUCTURE OF THE ATPASE REGION OF SACCHAROMYCES CEREVISIAE TOPOISOMERASE II BOUND TO ICRF-187 (DEXRAZOXANE) 分子名称: (S)-4,4'-(1-METHYL-1,2-ETHANEDIYL)BIS-2,6-PIPERAZINEDIONE, DNA topoisomerase II, MAGNESIUM ION, ... 著者 Classen, S, Olland, S, Berger, J.M. 登録日 2003-09-17 公開日 2003-09-30 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187 Proc.Natl.Acad.Sci.USA, 100, 2003
4O1R	Crystal structure of NpuDnaB intein 分子名称: CHLORIDE ION, GLYCEROL, Replicative DNA helicase, ... 著者 Aranko, A.S, Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H. 登録日 2013-12-16 公開日 2014-03-19 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structure-based engineering and comparison of novel split inteins for protein ligation. Mol Biosyst, 10, 2014
481D	CRYSTAL STRUCTURE OF A HEXITOL NUCLEIC ACID (HNA) DUPLEX AT 1.6A RESOLUTION 分子名称: 5'-H(*(6HG)P*(6HT)P*(6HG)P*(6HT)P*(6HA)P*(6HC)P*(6HA)P*(6HC))-3' 著者 Declercq, R, Van Meervelt, L. 登録日 1999-07-23 公開日 2002-04-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of double helical hexitol nucleic acids. J.Am.Chem.Soc., 124, 2002
5U6K	Crystal structure of TopBP1 BRCT4/5 in complex with a BLM phosphopeptide 分子名称: Bloom Sydrome recQ helicase like protein (BLM), DNA topoisomerase 2-binding protein 1 著者 Glover, J.N.M, Sun, L, Edwards, R.A. 登録日 2016-12-08 公開日 2017-10-04 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural Insight into BLM Recognition by TopBP1. Structure, 25, 2017
5TGG	Solution structure of parallel stranded adenosine duplex 分子名称: RNA/DNA (5'-D(P*T)-R(*(A2M)P*(A2M)P*(A2M)P*(A2M))-D(P*A)-R(P*(A2M)P*(A2M)P*(A2M))-3') 著者 Denisov, A, Noronha, A, Gehring, K, Wilds, C. 登録日 2016-09-27 公開日 2017-08-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. Nucleic Acids Res., 45, 2017
5VXQ	X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5 分子名称: AMMONIUM ION, DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3') 著者 Xie, J, Chen, Y, Wei, X, Kozlov, G, Gehring, K. 登録日 2017-05-23 公開日 2017-08-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.002 Å) 主引用文献 Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. Nucleic Acids Res., 45, 2017
8U10	In situ cryo-EM structure of bacteriophage P22 gp1:gp4:gp5:gp10:gp9 N-term complex in conformation 1 at 3.2A resolution 分子名称: Major capsid protein, Packaged DNA stabilization protein gp10, Peptidoglycan hydrolase gp4, ... 著者 Iglesias, S, Feng-Hou, C, Cingolani, G. 登録日 2023-08-30 公開日 2023-11-22 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery. J.Mol.Biol., 435, 2023
8U11	In situ cryo-EM structure of bacteriophage P22 gp1:gp5:gp4: gp10: gp9 N-term complex in conformation 2 at 3.1A resolution 分子名称: Major capsid protein, Packaged DNA stabilization protein gp10, Peptidoglycan hydrolase gp4, ... 著者 Iglesias, S, Feng-Hou, C, Cingolani, G. 登録日 2023-08-30 公開日 2023-11-22 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery. J.Mol.Biol., 435, 2023
5VBJ	Sulfur as a bromine biomolecular halogen-bond acceptor 分子名称: CALCIUM ION, DNA (5'-D(*CP*CP*GP*AP*TP*(AS)P*(BRU)P*CP*GP*G)-3') 著者 Ford, M.C, Ho, P.S. 登録日 2017-03-29 公開日 2017-08-09 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.944 Å) 主引用文献 Sulfur as an Acceptor to Bromine in Biomolecular Halogen Bonds. J Phys Chem Lett, 8, 2017
3SC8	Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-3 分子名称: 2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone, Human telomeric repeat sequence, POTASSIUM ION 著者 Collie, G.W, Promontorio, R, Parkinson, G.N. 登録日 2011-06-07 公開日 2012-02-15 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.302 Å) 主引用文献 Structural basis for telomeric g-quadruplex targeting by naphthalene diimide ligands. J.Am.Chem.Soc., 134, 2012
7BJQ	Crystal structure of RecJCdc45 from Methanothermobacter thermoautotroficus in complex with ssDNA 分子名称: Conserved protein, DNA (5'-D(*5P*'P*-P*CP*AP*TP*GP*GP*CP*-P*3P*')-3'), MANGANESE (II) ION 著者 De March, M, Onesti, S. 登録日 2021-01-14 公開日 2022-07-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of RecJCdc45 from Methanothermobacter thermoautotroficus To Be Published
7K5D	Ebola virus VP40 octameric ring generated by a DNA oligonucleotide 分子名称: HSP DNA oligonucleotide, Matrix protein VP40 著者 Landeras-Bueno, S, Wasserman, H, Salie, Z.L, Saphire, E.O. 登録日 2020-09-16 公開日 2021-04-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Cellular mRNA triggers structural transformation of Ebola virus matrix protein VP40 to its essential regulatory form. Cell Rep, 35, 2021
5KGO	Structure of K. pneumonia MrkH-c-di-GMP complex 分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Flagellar brake protein YcgR 著者 Schumacher, M. 登録日 2016-06-13 公開日 2016-08-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 To be published: Structures of K. pneumonia MrkH: dual utilization of the PilZ fold for c-di-GMP and DNA binding by a novel activator of biofilm genes To Be Published
6PSI	Structural Basis for Client Recognition and Activity of Hsp40 Chaperones 分子名称: Alkaline phosphatase, Chaperone protein DnaJ 2 著者 Jiang, Y, Rossi, P, Kalodimos, C.G. 登録日 2019-07-12 公開日 2019-09-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural basis for client recognition and activity of Hsp40 chaperones. Science, 365, 2019
8JYD	A genetically encoded sensor based on a bacterial DNA ligase 分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase 著者 Chen, L. 登録日 2023-07-03 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A genetically encoded sensor To Be Published
4KFG	The DNA Gyrase B ATP binding domain of Escherichia coli in complex with a small molecule inhibitor. 分子名称: 6-fluoro-4-[(3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(1H)-yl]-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine, DNA gyrase subunit B, SULFATE ION 著者 Bensen, D.C, Akers-Rodriguez, S, Lam, T, Tari, L.W. 登録日 2013-04-26 公開日 2014-01-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 A new class of type IIA topoisomerase inhibitors with broad-spectrum antibacterial activity To be Published
5KEC	Structure of K. pneumonia MrkH in its apo state. 分子名称: Flagellar brake protein YcgR 著者 Schumacher, M. 登録日 2016-06-09 公開日 2016-08-17 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.949 Å) 主引用文献 to be published: Structures of K. pneumonia MrkH: dual utilization of the PilZ fold for c-di-GMP and DNA binding by a novel activator of biofilm genes To Be Published
7LTO	Nse5-6 complex 分子名称: Non-structural maintenance of chromosome element 5, Ubiquitin-like protein SMT3,DNA repair protein KRE29 chimera 著者 Yu, Y, Li, S.B, Zheng, S, Tangy, S, Koyi, C, Wan, B.B, Kung, H.H, Andrej, S, Alex, K, Patel, D.J, Zhao, X.L. 登録日 2021-02-19 公開日 2021-05-19 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Integrative analysis reveals unique structural and functional features of the Smc5/6 complex. Proc.Natl.Acad.Sci.USA, 118, 2021
4K4O	The DNA Gyrase B ATP binding domain of Enterococcus faecalis in complex with a small molecule inhibitor 分子名称: 6-fluoro-4-[(3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(1H)-yl]-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine, DNA gyrase subunit B, TERTIARY-BUTYL ALCOHOL 著者 Bensen, D.C, Akers-Rodriguez, S, Lam, T, Tari, L.W. 登録日 2013-04-12 公開日 2014-01-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 A new class of type IIA topoisomerase inhibitors with broad-spectrum antibacterial activity To be Published
4MN4	Structural Basis for the MukB-topoisomerase IV Interaction 分子名称: Chromosome partition protein MukB, DNA topoisomerase 4 subunit A 著者 Vos, S.M, Stewart, N.K, Oakley, M.G, Berger, J.M. 登録日 2013-09-09 公開日 2013-10-23 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo. Embo J., 32, 2013
1EU2	DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(TGCTCGCT) 分子名称: CYCLIC OLIGONUCLEOTIDE D(TGCTCGCT) 著者 Escaja, N, Pedroso, E, Rico, M, Gonzalez, C. 登録日 2000-04-13 公開日 2001-01-24 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Dimeric Solution Structure of Two Cyclic Octamers: Four-Stranded DNA Structures Stabilized by A:T:A:T and G:C:G:C J.Am.Chem.Soc., 122, 2000

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