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8DRZ
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BU of 8drz by Molmil
Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp13-nsp14 (C13) cut site sequence
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER, ...
著者Lee, J, Kenward, C, Worrall, L.J, Vuckovic, M, Paetzel, M, Strynadka, N.C.J.
登録日2022-07-21
公開日2022-09-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation.
Nat Commun, 13, 2022
7U33
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BU of 7u33 by Molmil
Crystal structure of human GSK3B in complex with ARN9133
分子名称: 3-[2-amino-5-(4-fluorophenyl)pyrimidin-4-yl]-N,N-dimethylazetidine-1-sulfonamide, CHLORIDE ION, Glycogen synthase kinase-3 beta
著者Tripathi, S.K, Balboni, B, Giabbai, B, Storici, P, Girotto, S, Cavalli, A.
登録日2022-02-25
公開日2022-04-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Identification of Novel GSK-3 beta Hits Using Competitive Biophysical Assays.
Int J Mol Sci, 23, 2022
6B7F
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BU of 6b7f by Molmil
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with (R)-3,3-dimethyl-4-(5-vinyl-1H-imidazol-1-yl)isochroman-1-one
分子名称: (4R)-4-(5-ethenyl-1H-imidazol-1-yl)-3,3-dimethyl-3,4-dihydro-1H-2-benzopyran-1-one, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DIMETHYL SULFOXIDE, ...
著者Proudfoot, A.W, Bussiere, D, Lingel, A.
登録日2017-10-03
公開日2017-12-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.562 Å)
主引用文献High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization.
J. Am. Chem. Soc., 139, 2017
7WWR
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BU of 7wwr by Molmil
Structure of a triple-helix region of human collagen type III from Trautec
分子名称: Collagen alpha-1(III) chain
著者Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y.
登録日2022-02-14
公開日2022-04-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure of a triple-helix region of human collagen type III from Trautec
To Be Published
4Z3N
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BU of 4z3n by Molmil
Crystal structure of the MATE transporter ClbM
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CACODYLATE ION, Putative drug/sodium antiporter
著者Mousa, J.J, Bruner, S.D.
登録日2015-03-31
公開日2016-01-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献MATE transport of the E. coli-derived genotoxin colibactin.
Nat Microbiol, 1, 2016
7N7H
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BU of 7n7h by Molmil
X-ray crystal structure of Viperin-like enzyme from Nematostella vectensis
分子名称: CYTIDINE-5'-TRIPHOSPHATE, IRON/SULFUR CLUSTER, S-ADENOSYLMETHIONINE, ...
著者Grove, T.L, Almo, S.C, Bonanno, J.B, Lachowicz, J.C, Gizzi, A.G.
登録日2021-06-10
公開日2021-07-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Structural Insight into the Substrate Scope of Viperin and Viperin-like Enzymes from Three Domains of Life.
Biochemistry, 60, 2021
7WWN
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BU of 7wwn by Molmil
Structure of hypothetical protein TTHA1873 from Thermus thermophilus with Potassium mercuric iodide
分子名称: CALCIUM ION, hypothetical protein TTHA1873, tetraiodomercurate(2-)
著者Yuvaraj, I, Sekar, K.
登録日2022-02-14
公開日2022-04-06
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structure of the hypothetical protein TTHA1873 from Thermus thermophilus.
Acta Crystallogr.,Sect.F, 78, 2022
7U2Z
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BU of 7u2z by Molmil
Crystal structure of human GSK3B in complex with G12
分子名称: (3R)-1-[3-(2-fluorophenyl)propanoyl]-N-(pyridin-2-yl)pyrrolidine-3-carboxamide, CHLORIDE ION, Glycogen synthase kinase-3 beta
著者Tripathi, S.K, Balboni, B, Giabbai, B, Storici, P, Girotto, S, Cavalli, A.
登録日2022-02-25
公開日2022-04-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Identification of Novel GSK-3 beta Hits Using Competitive Biophysical Assays.
Int J Mol Sci, 23, 2022
4Z4B
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BU of 4z4b by Molmil
2-Pyridyl Hoechst - a New Generation DNA-Binding Radioprotector
分子名称: 5-(4-methylpiperazin-1-yl)-2'-(pyridin-2-yl)-1H,1'H-2,5'-bibenzimidazole, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
著者Wee, J.-Y, Dobson, R.C.J, White, J.M.
登録日2015-04-01
公開日2016-05-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.9652 Å)
主引用文献2-Pyridyl Hoechst - a New Generation DNA-Binding Radioprotector
To Be Published
8PRI
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BU of 8pri by Molmil
The structure of nvBagel9
分子名称: Cell surface protein
著者Vandebroek, L, Voet, A.R.D, Lee, X.Y.
登録日2023-07-12
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The structure of v13Bagel2
To Be Published
8PRL
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BU of 8prl by Molmil
The structure of v22Bagel8
分子名称: Cell surface protein
著者Vandebroek, L, Voet, A.R.D, Lee, X.Y.
登録日2023-07-12
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献The structure of v13Bagel8
To Be Published
7U31
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BU of 7u31 by Molmil
Crystal structure of human GSK3B in complex with G5
分子名称: 5-(4-fluorophenyl)-4-[1-(methanesulfonyl)azetidin-3-yl]pyrimidin-2-amine, CHLORIDE ION, Glycogen synthase kinase-3 beta
著者Tripathi, S.K, Balboni, B, Giabbai, B, Storici, P, Girotto, S, Cavalli, A.
登録日2022-02-25
公開日2022-04-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Identification of Novel GSK-3 beta Hits Using Competitive Biophysical Assays.
Int J Mol Sci, 23, 2022
7XAN
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BU of 7xan by Molmil
Structure of a triple-helix region of human collagen type III from Trautec
分子名称: Collagen alpha-1(III) chain
著者Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y.
登録日2022-03-18
公開日2022-04-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of a triple-helix region of human collagen type III from Trautec
To Be Published
8PTV
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BU of 8ptv by Molmil
IPNS variant N252Q in complex with Fe and ACV under anaerobic conditions
分子名称: FE (III) ION, Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, ...
著者Rabe, P, Schofield, C.J.
登録日2023-07-15
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献IPNS variant N252Q in complex with Fe and ACV under anaerobic conditions
To Be Published
6BA0
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BU of 6ba0 by Molmil
Pyrimidine-specific Ribonucleoside Hydrolase from Gardnerella vaginalis
分子名称: CALCIUM ION, CHLORIDE ION, Cytidine/uridine-specific hydrolase
著者Renner, N, Jacques, D.A.
登録日2017-10-11
公開日2018-10-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Pyrimidine-specific Ribonucleoside Hydrolase RihB from Gardnerella vaginalis
To Be Published
6VMF
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BU of 6vmf by Molmil
Crystal structure of the Y766F mutant of GoxA soaked with glycine
分子名称: Glycine oxidase, MAGNESIUM ION, SULFATE ION
著者Yukl, E.T.
登録日2020-01-27
公開日2020-04-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Roles of active-site residues in catalysis, substrate binding, cooperativity, and the reaction mechanism of the quinoprotein glycine oxidase.
J.Biol.Chem., 295, 2020
8DS2
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BU of 8ds2 by Molmil
Structure of SARS-CoV-2 Mpro in complex with the nsp13-nsp14 (C13) cut site sequence (form 2)
分子名称: 3C-like proteinase nsp5, GLYCEROL, SODIUM ION
著者Lee, J, Kenward, C, Worrall, L.J, Vuckovic, M, Paetzel, M, Strynadka, N.C.J.
登録日2022-07-21
公開日2022-09-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation.
Nat Commun, 13, 2022
6PG8
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BU of 6pg8 by Molmil
WDR5delta23 bound to (2-(3-phenylpropyl)-1H-imidazol-4-yl)methanol
分子名称: CHLORIDE ION, SULFATE ION, WD repeat-containing protein 5, ...
著者Dennis, M.L, Peat, T.S.
登録日2019-06-24
公開日2019-12-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Fragment screening for a protein-protein interaction inhibitor to WDR5.
Struct Dyn., 6, 2019
4ZOK
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BU of 4zok by Molmil
Methylsulfonyl-containing inhibitor bound in the substrate capture site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD)
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 4-methyl-2-{[2-methyl-6-(methylsulfonyl)phenyl]amino}benzoic acid, Anthranilate phosphoribosyltransferase, ...
著者Evans, G.L, Baker, E.N, Lott, J.S, TB Structural Genomics Consortium (TBSGC)
登録日2015-05-06
公開日2016-05-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD).
To be Published
8PGG
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BU of 8pgg by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2954
分子名称: 3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(2-oxidanylidene-1~{H}-pyridin-3-yl)ethyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
著者Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
登録日2023-06-18
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of the metallo-beta-lactamase VIM1 with 2954
To Be Published
8PTS
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BU of 8pts by Molmil
human GUK1 in complex with compound AT8001
分子名称: GLYCEROL, Guanylate kinase, [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
著者Zimberger, C, Canard, B, Ferron, F.
登録日2023-07-14
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural and functional basis for metabolic activation of the antiviral drug Bemnifosbuvir
To Be Published
8PG2
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BU of 8pg2 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2728
分子名称: 7-[(1~{S})-1-[5-(3-azanylpropyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, DIMETHYL SULFOXIDE, ...
著者Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
登録日2023-06-18
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of the metallo-beta-lactamase VIM1 with 2728
To Be Published
8DS1
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BU of 8ds1 by Molmil
Structure of SARS-CoV-2 Mpro in complex with nsp12-nsp13 (C12) cut site sequence
分子名称: 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER, SODIUM ION
著者Lee, J, Kenward, C, Worrall, L.J, Vuckovic, M, Paetzel, M, Strynadka, N.C.J.
登録日2022-07-21
公開日2022-09-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation.
Nat Commun, 13, 2022
8PGT
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BU of 8pgt by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 3393
分子名称: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(5-oxidanylpyridin-3-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
著者Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
登録日2023-06-18
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Crystal structure of the metallo-beta-lactamase VIM1 with 3393
To Be Published
7TIV
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BU of 7tiv by Molmil
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB48
分子名称: (1S,2S)-2-[(N-{[(3-chlorophenyl)methoxy]carbonyl}-3-cyclohexyl-L-alanyl)amino]-1-hydroxy-3-[(3R)-2-oxo-2,3-dihydro-1H-pyrrol-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5, MAGNESIUM ION
著者Forouhar, F, Liu, H, Iketani, S, Zack, A, Khanizeman, N, Bednarova, E, Fowler, B, Hong, S.J, Mohri, H, Nair, M.S, Huang, Y, Tay, N.E.S, Lee, S, Karan, C, Resnick, S.J, Quinn, C, Li, W, Shion, H, Jurtschenko, C, Lauber, M.A, McDonald, T, Stokes, M.E, Hurst, B, Rovis, T, Chavez, A, Ho, D.D, Stockwell, B.R.
登録日2022-01-14
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Development of optimized drug-like small molecule inhibitors of the SARS-CoV-2 3CL protease for treatment of COVID-19.
Nat Commun, 13, 2022

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件を2024-08-21に公開中

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