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1B99
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3'-FLUORO-URIDINE DIPHOSPHATE BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE
分子名称: 2',3'-DIDEOXY-3'-FLUORO-URIDIDINE-5'-DIPHOSPHATE, PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE), PYROPHOSPHATE 2-
著者Janin, J, Xu, Y.
登録日1999-02-22
公開日1999-06-28
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Catalytic mechanism of nucleoside diphosphate kinase investigated using nucleotide analogues, viscosity effects, and X-ray crystallography.
Biochemistry, 38, 1999
1QGV
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HUMAN SPLICEOSOMAL PROTEIN U5-15KD
分子名称: SPLICEOSOMAL PROTEIN U5-15KD
著者Reuter, K, Nottrott, S, Fabrizio, P, Luehrmann, R, Ficner, R.
登録日1999-05-06
公開日1999-12-12
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Identification, characterization and crystal structure analysis of the human spliceosomal U5 snRNP-specific 15 kD protein.
J.Mol.Biol., 294, 1999
1BHN
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NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM A FROM BOVINE RETINA
分子名称: GUANOSINE-3',5'-MONOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, NUCLEOSIDE DIPHOSPHATE TRANSFERASE
著者Ladner, J.E, Abdulaev, N.G, Kakuev, D.L, Karaschuk, G.N, Tordova, M, Eisenstein, E, Fujiwara, J.H, Ridge, K.D, Gilliland, G.L.
登録日1998-06-10
公開日1999-02-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The three-dimensional structures of two isoforms of nucleoside diphosphate kinase from bovine retina.
Acta Crystallogr.,Sect.D, 55, 1999
3Q86
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BU of 3q86 by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP
分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-06
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
3Q89
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with CDP
分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-06
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3Q8U
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-07
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
3Q8Y
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase, ...
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-07
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3Q8V
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with UDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-07
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
7DL9
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Crystal structure of nucleoside transporter NupG
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Nucleoside permease NupG
著者Wang, C, Xiao, Q.J, Deng, D.
登録日2020-11-26
公開日2021-04-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular basis for substrate recognition by the bacterial nucleoside transporter NupG.
J.Biol.Chem., 296, 2021
7AAV
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BU of 7aav by Molmil
Human pre-Bact-2 spliceosome core structure
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Cell division cycle 5-like protein, D-chiro inositol hexakisphosphate, ...
著者Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R.
登録日2020-09-04
公開日2020-12-09
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science, 370, 2020
1H1H
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Crystal Structure of Eosinophil Cationic Protein in Complex with 2',5'-ADP at 2.0 A resolution Reveals the Details of the Ribonucleolytic Active site
分子名称: ADENOSINE-2'-5'-DIPHOSPHATE, EOSINOPHIL CATIONIC PROTEIN
著者Mohan, C.G, Boix, E, Evans, H.R, Nikolovski, Z, Nogues, M.V, Cuchillo, C.M, Acharya, K.R.
登録日2002-07-15
公開日2002-10-03
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Crystal Structure of Eosinophil Cationic Protein in Complex with 2'5'-Adp at 2.0 A Resolution Reveals the Details of the Ribonucleolytic Active Site
Biochemistry, 41, 2002
1H8U
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Crystal Structure of the Eosinophil Major Basic Protein at 1.8A: An Atypical Lectin with a Paradigm Shift in Specificity
分子名称: EOSINOPHIL GRANULE MAJOR BASIC PROTEIN 1, GLYCEROL, SULFATE ION
著者Swaminathan, G.J, Weaver, A.J, Loegering, D.A, Checkel, J.L, Leonidas, D.D, Gleich, G.J, Acharya, K.R.
登録日2001-02-15
公開日2001-07-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Eosinophil Major Basic Protein at 1.8A. An Atypical Lectin with a Paradigm Shift in Specificity
J.Biol.Chem., 276, 2001
3VHB
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IMIDAZOLE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA SP.
分子名称: IMIDAZOLE, PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE
著者Bolognesi, M, Boffi, A, Coletta, M, Mozzarelli, A, Pesce, A, Tarricone, C, Ascenzi, P.
登録日1999-03-17
公開日1999-08-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Anticooperative ligand binding properties of recombinant ferric Vitreoscilla homodimeric hemoglobin: a thermodynamic, kinetic and X-ray crystallographic study.
J.Mol.Biol., 291, 1999
1IT8
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BU of 1it8 by Molmil
Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0
分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, MAGNESIUM ION, ZINC ION, ...
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-01-11
公開日2002-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
8AAG
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H1-bound palindromic nucleosome, state 1
分子名称: DNA/RNA (185-MER), Histone H1.0-B, Histone H2A type 1, ...
著者Alegrio Louro, J, Beinsteiner, B, Cheng, T.C, Patel, A.K.M, Boopathi, R, Angelov, D, Hamiche, A, Bednar, J, Kale, S, Dimitrov, S, Klaholz, B.
登録日2022-07-01
公開日2022-12-14
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms.
Structure, 31, 2023
3TM9
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BU of 3tm9 by Molmil
Y29A mutant of Vitreoscilla stercoraria hemoglobin
分子名称: 1,2-ETHANEDIOL, Bacterial hemoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Ratakonda, S, Anand, A, Dikshit, K, Stark, B.C, Howard, A.J.
登録日2011-08-31
公開日2014-04-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site.
Acta Crystallogr.,Sect.F, 69, 2013
3TLD
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BU of 3tld by Molmil
Crystal Structure of Y29F mutant of Vitreoscilla hemoglobin
分子名称: Bacterial hemoglobin, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE
著者Ratakonda, S, Anand, A, Dikshit, K, Stark, B.C, Howard, A.J.
登録日2011-08-29
公開日2014-04-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.896 Å)
主引用文献Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site.
Acta Crystallogr.,Sect.F, 69, 2013
6QA2
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BU of 6qa2 by Molmil
R80A MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS
分子名称: Nucleoside diphosphate kinase, SULFATE ION, TRIS(HYDROXYETHYL)AMINOMETHANE
著者Dautant, A, Henri, J, Wales, T.E, Meyer, P, Engen, J.R, Georgescauld, F.
登録日2018-12-18
公開日2019-02-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-ray Structure and H/D Exchange.
Biochemistry, 58, 2019
8QKU
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SWR1-nucleosome complex in configuration 1
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ...
著者Jalal, A.S.B, Wigley, D.B.
登録日2023-09-18
公開日2024-10-02
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Nucleosome flipping drives kinetic proofreading and processivity by SWR1.
Nature, 636, 2024
8QKV
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SWR1-nucleosome complex in configuration 2
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP6, BERYLLIUM TRIFLUORIDE ION, ...
著者Jalal, A.S.B, Wigley, D.B.
登録日2023-09-18
公開日2024-10-02
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Nucleosome flipping drives kinetic proofreading and processivity by SWR1.
Nature, 636, 2024
4LD7
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BU of 4ld7 by Molmil
Crystal structure of AnaPT from Neosartorya fischeri
分子名称: Dimethylallyl tryptophan synthase, SODIUM ION, TRIHYDROGEN THIODIPHOSPHATE
著者Zocher, G, Stehle, T.
登録日2013-06-24
公開日2013-12-11
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Catalytic Mechanism of Stereospecific Formation of cis-Configured Prenylated Pyrroloindoline Diketopiperazines by Indole Prenyltransferases.
Chem.Biol., 20, 2013
1ZUX
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BU of 1zux by Molmil
EosFP Fluorescent Protein- Green Form
分子名称: green to red photoconvertible GPF-like protein EosFP
著者Nar, H, Nienhaus, K, Wiedenmann, J, Nienhaus, G.U.
登録日2005-06-01
公開日2005-06-28
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2VHB
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AZIDE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA STERCORARIA
分子名称: AZIDE ION, HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
著者Tarricone, C, Galizzi, A, Coda, A, Ascenzi, P, Bolognesi, M.
登録日1997-02-19
公開日1998-02-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Unusual structure of the oxygen-binding site in the dimeric bacterial hemoglobin from Vitreoscilla sp.
Structure, 5, 1997
3GYW
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Crystal structure of nucleosome assembly protein from Plasmodium falciparum at 2.4 A resolution
分子名称: Nucleosome assembly protein 1, putative
著者Yogavel, M, Gill, J, Sharma, A.
登録日2009-04-06
公開日2009-05-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Iodide-SAD, SIR and SIRAS phasing for structure solution of a nucleosome assembly protein.
Acta Crystallogr.,Sect.D, 65, 2009
8ZJW
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BU of 8zjw by Molmil
Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
分子名称: Alpha subunit of light-harvesting 1 complex, BACTERIOCHLOROPHYLL A, Beta subunit of light-harvesting 1 complex, ...
著者Wang, G.-L, Wang, X.-P, Yu, L.-J.
登録日2024-05-15
公開日2025-01-22
実験手法ELECTRON MICROSCOPY (2.35 Å)
主引用文献Insights into the divergence of the photosynthetic LH1 complex obtained from structural analysis of the unusual photocomplexes of Roseospirillum parvum.
Commun Biol, 7, 2024

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