Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6OSQ
DownloadVisualize
BU of 6osq by Molmil
RF1 accommodated state bound Release complex 70S at long incubation time point
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
登録日2019-05-02
公開日2019-06-26
最終更新日2020-01-08
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6Q98
DownloadVisualize
BU of 6q98 by Molmil
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Rae, C.D.
登録日2018-12-17
公開日2019-02-27
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献How a circularized tmRNA moves through the ribosome.
Science, 363, 2019
6OLE
DownloadVisualize
BU of 6ole by Molmil
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-16
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6QUL
DownloadVisualize
BU of 6qul by Molmil
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Scaiola, A, Leibundgut, M, Boehringer, D, Ritz, D.
登録日2019-02-27
公開日2019-04-10
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic.
Sci Rep, 9, 2019
6MYU
DownloadVisualize
BU of 6myu by Molmil
Avian mitochondrial complex II crystallized in the presence of HQNO
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, DI(HYDROXYETHYL)ETHER, FE2/S2 (INORGANIC) CLUSTER, ...
著者Berry, E.A, Huang, L.-S.
登録日2018-11-02
公開日2019-11-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystallographic investigation of the ubiquinone binding site of respiratory Complex II and its inhibitors.
Biochim Biophys Acta Proteins Proteom, 1869, 2021
2JKZ
DownloadVisualize
BU of 2jkz by Molmil
SACCHAROMYCES CEREVISIAE HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH GMP (GUANOSINE 5'- MONOPHOSPHATE) (ORTHORHOMBIC CRYSTAL FORM)
分子名称: GUANOSINE-5'-MONOPHOSPHATE, HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE, SULFATE ION
著者Moynie, L, Giraud, M.F, Breton, A, Boissier, F, Daignan-Fornier, B, Dautant, A.
登録日2008-09-02
公開日2009-11-17
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3.45 Å)
主引用文献Functional Significance of Four Successive Glycine Residues in the Pyrophosphate Binding Loop of Fungal 6-Oxopurine Phosphoribosyltransferases.
Protein Sci., 21, 2012
2JD8
DownloadVisualize
BU of 2jd8 by Molmil
Crystal Structure of the Zn-soaked Ferritin from the Hyperthermophilic Archaeal Anaerobe Pyrococcus furiosus
分子名称: FE (III) ION, FERRITIN HOMOLOG, SULFATE ION, ...
著者Tatur, J, Hagen, W.R, Matias, P.M.
登録日2007-01-05
公開日2007-02-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the Ferritin from the Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
J.Biol.Inorg.Chem., 12, 2007
6N1D
DownloadVisualize
BU of 6n1d by Molmil
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Noller, H.F, Donohue, J.P, Lancaster, L, Zhou, J.
登録日2018-11-08
公開日2019-04-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6OXI
DownloadVisualize
BU of 6oxi by Molmil
Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Pavelich, I.J, Hoffer, E.D, Maehigashi, T, Dunham, C.M.
登録日2019-05-13
公開日2019-08-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.495 Å)
主引用文献Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability.
Nucleic Acids Res., 47, 2019
6OLA
DownloadVisualize
BU of 6ola by Molmil
Structure of the PCV2d virus-like particle
分子名称: Capsid protein, DNA (5'-D(P*CP*CP*GP*G)-3')
著者Khayat, R, Wen, K, Alimova, A, Galarza, J, Gottlieb, P.
登録日2019-04-16
公開日2019-09-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural characterization of the PCV2d virus-like particle at 3.3 angstrom resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.
Virology, 537, 2019
6QZP
DownloadVisualize
BU of 6qzp by Molmil
High-resolution cryo-EM structure of the human 80S ribosome
分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 18S rRNA (1740-MER), 28S rRNA (3773-MER), ...
著者Natchiar, S.K, Myasnikov, A.G, Kratzat, H, Hazemann, I, Klaholz, B.P.
登録日2019-03-12
公開日2019-04-24
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Visualization of chemical modifications in the human 80S ribosome structure.
Nature, 551, 2017
2LY8
DownloadVisualize
BU of 2ly8 by Molmil
The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant
分子名称: Budding yeast chaperone Scm3
著者Hong, J, Feng, H, Zhou, Z, Ghirlando, R, Bai, Y.
登録日2012-09-13
公開日2012-12-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Identification of Functionally Conserved Regions in the Structure of the Chaperone/CenH3/H4 Complex.
J.Mol.Biol., 425, 2013
6NDK
DownloadVisualize
BU of 6ndk by Molmil
Structure of ASLSufA6 A37.5 bound to the 70S A site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Nguyen, H.T, Hoffer, E.D, Dunham, C.M.
登録日2018-12-13
公開日2019-02-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.64 Å)
主引用文献Importance of a tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing intRNACGGProfor decoding
J. Biol. Chem., 294, 2019
6NAH
DownloadVisualize
BU of 6nah by Molmil
Crystal structure of Neisseria meningitidis ClpP protease in complex with Acyldepsipeptide-14 (ADEP-14)
分子名称: ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide-14, OCTANOIC ACID (CAPRYLIC ACID)
著者Mabanglo, M.F, Houry, W.A.
登録日2018-12-05
公開日2019-11-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献ClpP protease activation results from the reorganization of the electrostatic interaction networks at the entrance pores.
Commun Biol, 2, 2019
6R7Q
DownloadVisualize
BU of 6r7q by Molmil
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R.
登録日2019-03-29
公開日2019-07-10
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6NFP
DownloadVisualize
BU of 6nfp by Molmil
1.7 Angstrom Resolution Crystal Structure of Arginase from Bacillus subtilis subsp. subtilis str. 168
分子名称: 1,2-ETHANEDIOL, Arginase, CHLORIDE ION, ...
著者Minasov, G, Wawrzak, Z, Evdokimova, E, Grimshaw, S, Kwon, K, Savchenko, A, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2018-12-20
公開日2019-01-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献1.7 Angstrom Resolution Crystal Structure of Arginase from Bacillus subtilis subsp. subtilis str. 168
To Be Published
6ND5
DownloadVisualize
BU of 6nd5 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Svetlov, M.S, Plessa, E, Chen, C.-W, Bougas, A, Krokidis, M.G, Dinos, G.P, Polikanov, Y.S.
登録日2018-12-13
公開日2019-03-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献High-resolution crystal structures of ribosome-bound chloramphenicol and erythromycin provide the ultimate basis for their competition.
RNA, 25, 2019
6OM0
DownloadVisualize
BU of 6om0 by Molmil
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-17
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6OWG
DownloadVisualize
BU of 6owg by Molmil
Structure of a synthetic beta-carboxysome shell, T=4
分子名称: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml, Microcompartments protein
著者Sutter, M, Laughlin, T.G, Davies, K.M, Kerfeld, C.A.
登録日2019-05-09
公開日2019-09-25
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structure of a Syntheticbeta-Carboxysome Shell.
Plant Physiol., 181, 2019
2JKY
DownloadVisualize
BU of 2jky by Molmil
SACCHAROMYCES CEREVISIAE HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH GMP (GUANOSINE 5'- MONOPHOSPHATE) (TETRAGONAL CRYSTAL FORM)
分子名称: GUANOSINE-5'-MONOPHOSPHATE, HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE, MAGNESIUM ION, ...
著者Moynie, L, Giraud, M.F, Breton, A, Boissier, F, Daignan-Fornier, B, Dautant, A.
登録日2008-09-02
公開日2009-11-17
最終更新日2019-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Functional Significance of Four Successive Glycine Residues in the Pyrophosphate Binding Loop of Fungal 6-Oxopurine Phosphoribosyltransferases.
Protein Sci., 21, 2012
6OSK
DownloadVisualize
BU of 6osk by Molmil
RF1 accommodated 70S complex at 60 ms
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Fu, Z, Indrisiunaite, G, Kaledhonkar, S, Shah, B, Sun, M, Chen, B, Grassucci, R.A, Ehrenberg, M, Frank, J.
登録日2019-05-01
公開日2019-06-26
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6OWF
DownloadVisualize
BU of 6owf by Molmil
Structure of a synthetic beta-carboxysome shell, T=3
分子名称: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml, Microcompartments protein
著者Sutter, M, Laughlin, T.G, Davies, K.M, Kerfeld, C.A.
登録日2019-05-09
公開日2019-09-25
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of a Syntheticbeta-Carboxysome Shell.
Plant Physiol., 181, 2019
6OM7
DownloadVisualize
BU of 6om7 by Molmil
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
著者Li, W, Cate, J.H.D.
登録日2019-04-18
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule.
Nat.Struct.Mol.Biol., 26, 2019
6ORE
DownloadVisualize
BU of 6ore by Molmil
Release complex 70S
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Fu, Z.
登録日2019-04-30
公開日2019-06-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy.
Nat Commun, 10, 2019
6RHZ
DownloadVisualize
BU of 6rhz by Molmil
Structure of a minimal photosystem I from a green alga
分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Perez Boerema, A, Klaiman, D, Caspy, I, Netzer-El, S.Y, Amunts, A, Nelson, N.
登録日2019-04-23
公開日2020-02-19
最終更新日2020-03-25
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of a minimal photosystem I from the green alga Dunaliella salina.
Nat.Plants, 6, 2020

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon