PDB: 97814 件ウェブページステータス検索Chemie searchBIRD

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2IWM	precursor mutant Cys1Ser of Penicillin V Acylase from Bacillus sphaericus 分子名称: PENICILLIN ACYLASE 著者 Chandra, P.M, Dodson, G, Suresh, C.G. 登録日 2006-07-01 公開日 2007-08-07 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Precursor Mutant Cys1Ser of Penicillin V Acylase from Bacilus Sphaericus To be Published
2IXV	Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, ALANINE, D-GLUTAMINE, ... 著者 Perez-Dorado, I, Hermoso, J.A. 登録日 2006-07-11 公開日 2007-07-03 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Elucidation of the Molecular Recognition of Bacterial Cell Wall by Modular Pneumococcal Phage Endolysin Cpl-1. J.Biol.Chem., 282, 2007
6DI4	Rational Modification of Vanillin Derivatives to Stereospecifically Destabilize Sickle Hemoglobin Polymer Formation 分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... 著者 Pagare, P.P, Musayev, F.N. 登録日 2018-05-22 公開日 2018-09-05 最終更新日 2019-12-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Rational modification of vanillin derivatives to stereospecifically destabilize sickle hemoglobin polymer formation. Acta Crystallogr D Struct Biol, 74, 2018
6O6C	RNA polymerase II elongation complex arrested at a CPD lesion 分子名称: DNA (27-MER), DNA (5'-D(P*GP*GP*AP*GP*AP*AP*GP*GP*AP*GP*CP*AP*GP*AP*GP*C)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Lahiri, I, Leshziner, A.E. 登録日 2019-03-05 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 3.1 angstrom structure of yeast RNA polymerase II elongation complex stalled at a cyclobutane pyrimidine dimer lesion solved using streptavidin affinity grids. J.Struct.Biol., 207, 2019
6OD7	Herpes simplex virus type 1 (HSV-1) pUL6 portal protein, dodecameric complex 分子名称: Portal protein 著者 Liu, Y.T, Jih, J, Dai, X.H, Bi, G.Q, Zhou, Z.H. 登録日 2019-03-26 公開日 2019-06-19 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.6 Å) 主引用文献 Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome. Nature, 570, 2019
8JND	The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding 分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... 著者 Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-06 公開日 2024-03-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.66 Å) 主引用文献 Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
8JNE	The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding 分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... 著者 Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-06 公開日 2024-03-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.68 Å) 主引用文献 Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
8JNF	The cryo-EM structure of the RAD51 filament bound to the nucleosome 分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... 著者 Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-06 公開日 2024-03-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (6.91 Å) 主引用文献 Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
3LNX	Second PDZ domain from human PTP1E 分子名称: IODIDE ION, THIOCYANATE ION, Tyrosine-protein phosphatase non-receptor type 13 著者 Zhang, J, Chang, A, Ke, H, Phillips Jr, G.N, Lee, A.L, Center for Eukaryotic Structural Genomics (CESG) 登録日 2010-02-03 公開日 2010-02-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.642 Å) 主引用文献 Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E. Biochemistry, 49, 2010
5XM0	The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4 分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Taguchi, H, Horikoshi, N, Kurumizaka, H. 登録日 2017-05-12 公開日 2018-03-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.874 Å) 主引用文献 Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
5XNF	Crystal structure of the branched-chain polyamine synthase (BpsA) from Thermococcus kodakarensis 分子名称: FE (III) ION, GLYCEROL, N(4)-bis(aminopropyl)spermidine synthase, ... 著者 Mizohata, E, Tse, K.M, Fujita, J, Inoue, T. 登録日 2017-05-22 公開日 2018-08-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J., 284, 2017
5K9M	Crystal Structure of PriB Binary Complex with Product Diphosphate 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PYROPHOSPHATE 2-, PriB Prenyltransferase 著者 Cao, H, Elshahawi, S, Benach, J, Wasserman, S.R, Morisco, L.L, Koss, J.W, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro) 登録日 2016-06-01 公開日 2016-06-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure and specificity of a permissive bacterial C-prenyltransferase. Nat. Chem. Biol., 13, 2017
6OQQ	Legionella pneumophila SidJ/Saccharomyces cerevisiae calmodulin complex 分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CALCIUM ION, ... 著者 Tomchick, D.R, Tagliabracci, V.S, Black, M, Osinski, A. 登録日 2019-04-28 公開日 2019-05-15 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.102 Å) 主引用文献 Bacterial pseudokinase catalyzes protein polyglutamylation to inhibit the SidE-family ubiquitin ligases. Science, 364, 2019
4XUI	Crystal structure analysis of cruzain bound to the no-covalent analog of WRR-483 (WRR-669) 分子名称: 1,2-ETHANEDIOL, Cruzipain, N-[(2S)-5-(carbamimidamidooxy)-1-oxo-1-{[(1E,3S)-5-phenyl-1-(pyrimidin-2-ylsulfonyl)pent-1-en-3-yl]amino}pentan-2-yl]-4-methylpiperazine-1-carboxamide 著者 Tochowicz, A, McKerrow, J.H. 登録日 2015-01-26 公開日 2015-03-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.508 Å) 主引用文献 Synthesis and Evaluation of Oxyguanidine Analogues of the Cysteine Protease Inhibitor WRR-483 against Cruzain. Acs Med.Chem.Lett., 7, 2016
5XNH	Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with spermidine 分子名称: FE (III) ION, N(4)-bis(aminopropyl)spermidine synthase, SPERMIDINE 著者 Mizohata, E, Tse, K.M, Fujita, J, Inoue, T. 登録日 2017-05-22 公開日 2017-10-04 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J., 284, 2017
5J43	CdiA-CT from uropathogenic Escherichia coli in complex with CysK 分子名称: Cysteine synthase A, tRNA nuclease CdiA 著者 Morse, R.P, Goulding, C.W, Johnson, P.M. 登録日 2016-03-31 公開日 2016-07-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Unraveling the essential role of CysK in CDI toxin activation. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
4KLB	Crystal Structure of Cruzain in complex with the non-covalent inhibitor Nequimed176 分子名称: 2-{[(1H-1,2,4-triazol-5-ylsulfanyl)acetyl]amino}thiophene-3-carboxamide, Cruzipain 著者 Fernandes, W.B, Montanari, C.A, Mckerrow, J.H. 登録日 2013-05-07 公開日 2013-09-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 Non-peptidic Cruzain Inhibitors with Trypanocidal Activity Discovered by Virtual Screening and In Vitro Assay. Plos Negl Trop Dis, 7, 2013
6ESG	Nucleosome breathing : Class 2 分子名称: DNA (141-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.4 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
3LNY	Second PDZ domain from human PTP1E in complex with RA-GEF2 peptide 分子名称: Rap guanine nucleotide exchange factor 6, SULFATE ION, THIOCYANATE ION, ... 著者 Zhang, J, Chang, A, Ke, H, Phillips Jr, G.N, Lee, A.L, Center for Eukaryotic Structural Genomics (CESG) 登録日 2010-02-03 公開日 2010-03-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E. Biochemistry, 49, 2010
6ESH	Nucleosome breathing : Class 3 分子名称: DNA (137-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
5XNC	Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with N4-aminopropylspermidine and 5-methylthioadenosine 分子名称: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, DI(HYDROXYETHYL)ETHER, ... 著者 Mizohata, E, Tse, K.M, Fujita, J, Inoue, T. 登録日 2017-05-22 公開日 2018-08-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J., 284, 2017
6ESI	Nucleosome breathing : Class 4 分子名称: DNA (133-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
5XY3	Large subunit of Trichomonas vaginalis ribosome 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Li, Z, Guo, Q, Zheng, L, Ji, Y, Xie, Y, Lai, D, Lun, Z, Suo, X, Gao, N. 登録日 2017-07-06 公開日 2017-08-30 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii Cell Res., 27, 2017
8FKY	Human nucleolar pre-60S ribosomal subunit (State F) 分子名称: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... 著者 Vanden Broeck, A, Klinge, S. 登録日 2022-12-21 公開日 2023-07-12 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.67 Å) 主引用文献 Principles of human pre-60 S biogenesis. Science, 381, 2023
7KLP	Crystal structure of a three-tetrad, parallel, K+ stabilized human telomeric G-quadruplex 分子名称: HEXAETHYLENE GLYCOL, POTASSIUM ION, telomeric DNA 著者 Yatsunyk, L.A, Li, K.S, Chen, E.V. 登録日 2020-10-30 公開日 2020-12-30 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Water spines and networks in G-quadruplex structures. Nucleic Acids Res., 49, 2021

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