PDB: 2059 件ウェブページステータス検索Chemie searchBIRD

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6ZMO	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Thoms, M, Buschauer, R, Ameismeier, M, Denk, T, Kratzat, H, Mackens-Kiani, T, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2020-07-03 公開日 2020-08-19 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2. Science, 369, 2020
6ZU9	Structure of a yeast ABCE1-bound 48S initiation complex 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... 著者 Kratzat, H, Mackens-Kiani, T, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2020-07-22 公開日 2020-10-28 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (6.2 Å) 主引用文献 A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes. Embo J., 40, 2021
6ZXF	Cryo-EM structure of a late human pre-40S ribosomal subunit - State G 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R. 登録日 2020-07-29 公開日 2020-12-02 最終更新日 2020-12-09 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for the final steps of human 40S ribosome maturation. Nature, 587, 2020
6ZMI	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Thoms, M, Buschauer, R, Ameismeier, M, Denk, T, Kratzat, H, Mackens-Kiani, T, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2020-07-02 公開日 2020-08-19 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2. Science, 369, 2020
6ZVI	Mbf1-ribosome complex 分子名称: 18S rRNA, 40S ribosomal protein S0-A, 40S ribosomal protein S10-A, ... 著者 Best, K.M, Denk, T, Cheng, J, Thoms, M, Berninghausen, O, Beckmann, R. 登録日 2020-07-24 公開日 2020-09-09 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 EDF1 coordinates cellular responses to ribosome collisions. Elife, 9, 2020
5A2Q	Structure of the HCV IRES bound to the human ribosome 分子名称: 18S RRNA, HCV IRES, MAGNESIUM ION, ... 著者 Quade, N, Leiundgut, M, Boehringer, D, Heuvel, J.v.d, Ban, N. 登録日 2015-05-21 公開日 2015-07-15 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution Nat.Commun., 6, 2015
6LQS	Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S pre-rRNA, 40S ribosomal protein S1-A, ... 著者 Du, Y, Ye, K. 登録日 2020-01-14 公開日 2020-09-16 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states. Science, 369, 2020
6LQR	Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S pre-rRNA, 40S ribosomal protein S1-A, ... 著者 Du, Y, Ye, K. 登録日 2020-01-14 公開日 2020-09-16 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (8.6 Å) 主引用文献 Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states. Science, 369, 2020
6LQV	Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S pre-rRNA, 40S ribosomal protein S11-A, ... 著者 Du, Y, Ye, K. 登録日 2020-01-14 公開日 2020-09-16 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states. Science, 369, 2020
5TGA	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ... 著者 Melnikov, S, Mailliot, J. 登録日 2016-09-27 公開日 2016-11-23 最終更新日 2016-12-14 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
5TGM	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ... 著者 Melnikov, S, Mailliot, J, Yusupov, M. 登録日 2016-09-28 公開日 2017-01-18 最終更新日 2022-12-07 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Molecular insights into protein synthesis with proline residues. EMBO Rep., 17, 2016
5TBW	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Konst, Z.A, Szklarski, A.R, Pellegrino, S, Michalak, S.E, Meyer, M, Zanette, C, Cencic, R, Nam, S, Horne, D.A, Pelletier, J, Mobley, D.L, Yusupova, G, Yusupov, M, Vanderwal, C.D. 登録日 2016-09-13 公開日 2017-07-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Synthesis facilitates an understanding of the structural basis for translation inhibition by the lissoclimides. Nat Chem, 9, 2017
5T2C	CryoEM structure of the human ribosome at 3.6 Angstrom resolution 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Zhang, X, Lai, M, Zhou, Z.H. 登録日 2016-08-23 公開日 2017-01-25 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
5TZS	Architecture of the yeast small subunit processome 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 3' domain-associated, ... 著者 Chaker-Margot, M, Barandun, J, Hunziker, M, Klinge, S. 登録日 2016-11-22 公開日 2016-12-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Architecture of the yeast small subunit processome. Science, 355, 2017
5UKD	PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CYTIDINE-5'-MONOPHOSPHATE, ... 著者 Schlichting, I, Reinstein, J. 登録日 1999-04-18 公開日 1999-08-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 pH influences fluoride coordination number of the AlFx phosphoryl transfer transition state analog. Nat.Struct.Biol., 6, 1999
5VYC	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Lomakin, I.B, Stolboushkina, E.A, Vaidya, A.T, Garber, M.B, Dmitriev, S.E, Steitz, T.A. 登録日 2017-05-24 公開日 2017-07-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1. Cell Rep, 20, 2017
5T2A	CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution 分子名称: 18S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Zhang, X, Lai, M, Zhou, Z.H. 登録日 2016-08-23 公開日 2017-01-25 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
1M0E	ZEBULARINE: A NOVEL DNA METHYLATION INHIBITOR THAT FORMS A COVALENT COMPLEX WITH DNA METHYLTRANSFERASE 分子名称: 5'-D(P*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3', 5'-D(P*GP*TP*CP*AP*GP*(Z)P*GP*CP*AP*TP*GP*G)-3', Modification methylase HhaI, ... 著者 Zhou, L, Cheng, X, Connolly, B.A, Dickman, M.J, Hurd, P.J, Hornby, D.P. 登録日 2002-06-12 公開日 2002-09-18 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 ZEBULARINE: A NOVEL DNA METHYLATION INHIBITOR THAT FORMS A COVALENT COMPLEX WITH DNA METHYLTRANSFERASES J.MOL.BIOL., 321, 2002
6AZ1	Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin 分子名称: E-site tRNA, LACK1, MAGNESIUM ION, ... 著者 Shalev-Benami, M, Zhang, Y, Rozenberg, H, Matzov, D, Zimmerman, E, Bashan, A, Jaffe, C.L, Yonath, A, Skiniotis, G. 登録日 2017-09-09 公開日 2017-12-06 最終更新日 2019-07-03 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin. Nat Commun, 8, 2017
1NJJ	Crystal structure determination of T. brucei ornithine decarboxylase bound to D-ornithine and to G418 分子名称: GENETICIN, N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE, ornithine decarboxylase 著者 Jackson, L.K, Goldsmith, E.J, Phillips, M.A. 登録日 2002-12-31 公開日 2003-08-26 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 X-ray Structure Determination of Trypanosoma brucei Ornithine Decarboxylase Bound to D-Ornithine and to G418: INSIGHTS INTO SUBSTRATE BINDING AND ODC CONFORMATIONAL FLEXIBILITY. J.Biol.Chem., 278, 2003
1KS8	The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 2.5. 分子名称: Endo-b-1,4-glucanase, SULFATE ION 著者 Khademi, S, Guarino, L.A, Watanabe, H, Tokuda, G, Meyer, E.F. 登録日 2002-01-11 公開日 2003-01-21 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structure of an endoglucanase from termite, Nasutitermes takasagoensis. Acta Crystallogr.,Sect.D, 58, 2002
6DGI	The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961 分子名称: ACETATE ION, D-alanine--D-alanine ligase, GLYCEROL, ... 著者 Tan, K, Zhou, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2018-05-17 公開日 2018-05-30 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961 To Be Published
6D9J	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. 分子名称: 18S rRNA, 28S rRNA, 5.8S rRNA, ... 著者 Pisareva, V.P, Pisarev, A.V, Fernandez, I.S. 登録日 2018-04-30 公開日 2018-06-06 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES. Elife, 7, 2018
1P3J	Adenylate Kinase from Bacillus subtilis 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Bae, E, Phillips Jr, G.N. 登録日 2003-04-17 公開日 2004-05-04 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. J.Biol.Chem., 279, 2004
1MHT	COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE 分子名称: DNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE), ... 著者 Cheng, X. 登録日 1994-12-08 公開日 1995-06-03 最終更新日 2018-04-18 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 HhaI methyltransferase flips its target base out of the DNA helix. Cell(Cambridge,Mass.), 76, 1994

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