Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MFV
DownloadVisualize
BU of 6mfv by Molmil
Crystal structure of the Signal Transduction ATPase with Numerous Domains (STAND) protein with a tetratricopeptide repeat sensor PH0952 from Pyrococcus horikoshii
分子名称: ADENOSINE-5'-DIPHOSPHATE, tetratricopeptide repeat sensor PH0952
著者Lisa, M.N, Alzari, P.M, Haouz, A, Danot, O.
登録日2018-09-12
公開日2019-02-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Double autoinhibition mechanism of signal transduction ATPases with numerous domains (STAND) with a tetratricopeptide repeat sensor.
Nucleic Acids Res., 47, 2019
7UZD
DownloadVisualize
BU of 7uzd by Molmil
Structure of the SARS-CoV-2 RBD in complex with the mouse antibody Fab fragment, HSW-2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HSW-2 Fab heavy chain, HSW-2 Fab light chain, ...
著者Fan, C, Bjorkman, P.J.
登録日2022-05-08
公開日2023-01-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes.
Immunity, 55, 2022
5CH8
DownloadVisualize
BU of 5ch8 by Molmil
Crystal structure of MDLA N225Q mutant form Penicillium cyclopium
分子名称: CHLORIDE ION, GLYCEROL, Mono- and diacylglycerol lipase, ...
著者Xu, J, Xu, H, Hou, S, Liu, J.
登録日2015-07-10
公開日2016-04-20
最終更新日2017-09-27
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Lipase-Driven Epoxidation Is A Two-Stage Synergistic Process
ChemistrySelect, 4, 2016
7OJZ
DownloadVisualize
BU of 7ojz by Molmil
SaFtsZ complexed with GMPCP
分子名称: 1,2-ETHANEDIOL, Cell division protein FtsZ, PHOSPHOMETHYLPHOSPHONIC ACID GUANOSYL ESTER, ...
著者Fernandez-Tornero, C, Ruiz, F.M, Andreu, J.M.
登録日2021-05-17
公開日2022-03-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献FtsZ filament structures in different nucleotide states reveal the mechanism of assembly dynamics.
Plos Biol., 20, 2022
7UU6
DownloadVisualize
BU of 7uu6 by Molmil
Crystal structure of the SARS-CoV-2 main protease in its apo-form
分子名称: 3C-like proteinase nsp5
著者Yang, K.S, Liu, W.R.
登録日2022-04-28
公開日2023-01-25
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A Novel Y-Shaped, S-O-N-O-S-Bridged Cross-Link between Three Residues C22, C44, and K61 Is Frequently Observed in the SARS-CoV-2 Main Protease.
Acs Chem.Biol., 18, 2023
8Q6W
DownloadVisualize
BU of 8q6w by Molmil
LSSmOrange - Directionality of Optical Properties of Fluorescent Proteins
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, SULFATE ION, ...
著者Myskova, J, Brynda, J, Lazar, J.
登録日2023-08-15
公開日2024-08-28
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Directionality of Optical Properties of Fluorescent Proteins
To Be Published
7MEE
DownloadVisualize
BU of 7mee by Molmil
CDD-1 beta-lactamase in imidazole/MPD 6 minute avibactam complex
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-lactamase, ...
著者Smith, C.A, Vakulenko, S.B.
登録日2021-04-06
公開日2022-02-16
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献In Crystallo Time-Resolved Interaction of the Clostridioides difficile CDD-1 enzyme with Avibactam Provides New Insights into the Catalytic Mechanism of Class D beta-lactamases.
Acs Infect Dis., 7, 2021
7OL9
DownloadVisualize
BU of 7ol9 by Molmil
Crystal structure of C-terminally truncated Bacillus subtilis nucleoid occlusion protein (Noc) complexed to the Noc-binding site (NBS)
分子名称: DNA (5'-D(*TP*AP*TP*TP*TP*CP*CP*CP*GP*GP*GP*AP*AP*AP*TP*A)-3'), Nucleoid occlusion protein
著者Jalal, A.S.B, Lawson, D.M, Le, T.B.K.
登録日2021-05-19
公開日2022-03-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The CTP-binding domain is disengaged from the DNA-binding domain in a cocrystal structure of Bacillus subtilis Noc-DNA complex.
J.Biol.Chem., 299, 2023
6LW8
DownloadVisualize
BU of 6lw8 by Molmil
Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis
分子名称: (4R)-4-(4-fluorophenyl)-4,5,6,7-tetrahydro-1H-imidazo[4,5-c]pyridine, DNA ligase A, GLYCEROL, ...
著者Ramachandran, R, Afsar, M, Shukla, A.
登録日2020-02-07
公開日2021-02-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.401 Å)
主引用文献Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A.
J.Struct.Biol., 213, 2021
8KG2
DownloadVisualize
BU of 8kg2 by Molmil
Crystal structure of p97-N/D1 hexamer in complex with FAF1-UBX domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, FAS-associated factor 1, Transitional endoplasmic reticulum ATPase
著者Kang, W.
登録日2023-08-17
公開日2024-05-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal Structure of p97-N/D1 Hexamer Complexed with FAF1 UBX Domain
J. Korean Chem. Soc., 2024
8TA1
DownloadVisualize
BU of 8ta1 by Molmil
Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor MAM907
分子名称: 3-(2-{3-[(2,4-diamino-6-cyclohexylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid, ACETATE ION, Dihydrofolate reductase, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2023-06-26
公開日2024-08-28
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor MAM907
To be published
7MEC
DownloadVisualize
BU of 7mec by Molmil
CDD-1 beta-lactamase in imidazole/MPD 4 minute avibactam complex
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-lactamase, ...
著者Smith, C.A, Vakulenko, S.B.
登録日2021-04-06
公開日2022-02-16
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献In Crystallo Time-Resolved Interaction of the Clostridioides difficile CDD-1 enzyme with Avibactam Provides New Insights into the Catalytic Mechanism of Class D beta-lactamases.
Acs Infect Dis., 7, 2021
7UDQ
DownloadVisualize
BU of 7udq by Molmil
Crystal structure of COQ8A-CA157 inhibitor complex in space group P1
分子名称: 4-[(3,4,5-trimethoxyphenyl)amino]quinoline-7-carbonitrile, Atypical kinase COQ8A, mitochondrial, ...
著者Bingman, C.A, Murray, N, Smith, R.W, Pagliarini, D.J.
登録日2022-03-20
公開日2023-01-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Small-molecule inhibition of the archetypal UbiB protein COQ8.
Nat.Chem.Biol., 19, 2023
7XQK
DownloadVisualize
BU of 7xqk by Molmil
The Crystal Structure of CDK3 and CyclinE1 Complex from Biortus.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, G1/S-specific cyclin-E1, GLYCEROL, ...
著者Gui, W, Wang, F, Cheng, W, Gao, J, Huang, Y.
登録日2022-05-07
公開日2023-05-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The Crystal Structure of CDK3 and CyclinE1 Complex from Biortus.
To Be Published
7MDJ
DownloadVisualize
BU of 7mdj by Molmil
The structure of KcsA in complex with a synthetic Fab
分子名称: Fab heavy chain, Fab light chain, POTASSIUM ION, ...
著者Rohaim, A, Slezak, T, Blackowicz, L, Kossiakoff, A, Roux, B.
登録日2021-04-05
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Engineering of a synthetic antibody fragment for structural and functional studies of K+ channels.
J.Gen.Physiol., 154, 2022
7UU8
DownloadVisualize
BU of 7uu8 by Molmil
Crystal structure of the SARS-CoV-2 main protease in its apo-form
分子名称: 3C-like proteinase nsp5
著者Yang, K.S, Liu, W.R.
登録日2022-04-28
公開日2023-01-25
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Novel Y-Shaped, S-O-N-O-S-Bridged Cross-Link between Three Residues C22, C44, and K61 Is Frequently Observed in the SARS-CoV-2 Main Protease.
Acs Chem.Biol., 18, 2023
8TY3
DownloadVisualize
BU of 8ty3 by Molmil
MI-31 ligand bound to SARS-CoV-2 Mpro
分子名称: (1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide, 3C-like proteinase nsp5
著者Blankenship, L.R, Liu, W.R.
登録日2023-08-24
公開日2024-08-28
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献MI-31 bound to SARS-CoV-2 Mpro
To Be Published
7MEF
DownloadVisualize
BU of 7mef by Molmil
CDD-1 beta-lactamase in imidazole/MPD 10 minute avibactam complex
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-lactamase, ...
著者Smith, C.A, Vakulenko, S.B.
登録日2021-04-06
公開日2022-02-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献In Crystallo Time-Resolved Interaction of the Clostridioides difficile CDD-1 enzyme with Avibactam Provides New Insights into the Catalytic Mechanism of Class D beta-lactamases.
Acs Infect Dis., 7, 2021
7M23
DownloadVisualize
BU of 7m23 by Molmil
Human carbonic anhydrase II in complex with troglitazone
分子名称: (5R)-5-(4-{[(2R)-6-HYDROXY-2,5,7,8-TETRAMETHYL-3,4-DIHYDRO-2H-CHROMEN-2-YL]METHOXY}BENZYL)-1,3-THIAZOLIDINE-2,4-DIONE, Carbonic anhydrase 2, ZINC ION
著者Mueller, S.L, Peat, T.S.
登録日2021-03-16
公開日2022-02-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The Glitazone Class of Drugs as Carbonic Anhydrase Inhibitors-A Spin-Off Discovery from Fragment Screening.
Molecules, 26, 2021
8KB0
DownloadVisualize
BU of 8kb0 by Molmil
Crystal structure of 01JD-AEAIIVAMV
分子名称: Beta2-microglobulin, MHC class I antigen alpha chain, peptide of AIV
著者Tang, Z, Zhang, N.
登録日2023-08-03
公開日2024-05-29
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献The impact of micropolymorphism in Anpl-UAA on structural stability and peptide presentation.
Int.J.Biol.Macromol., 267, 2024
8Q7K
DownloadVisualize
BU of 8q7k by Molmil
IRGQ LIR2 peptide in complex with LC3B
分子名称: 1,2-ETHANEDIOL, Immunity-related GTPase family Q protein, Microtubule-associated proteins 1A/1B light chain 3B
著者Misra, M, Bailey, H.J, Pomirska, J, Dikic, I.
登録日2023-08-16
公開日2024-08-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Tumor immune evasion through IRGQ-directed autophagy
To Be Published
7UUC
DownloadVisualize
BU of 7uuc by Molmil
Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI19
分子名称: 3C-like proteinase nsp5, N-[(benzyloxy)carbonyl]-3-methyl-L-valyl-3-cyclopropyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide
著者Yang, K.S, Liu, W.R.
登録日2022-04-28
公開日2023-01-25
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Novel Y-Shaped, S-O-N-O-S-Bridged Cross-Link between Three Residues C22, C44, and K61 Is Frequently Observed in the SARS-CoV-2 Main Protease.
Acs Chem.Biol., 18, 2023
7MO6
DownloadVisualize
BU of 7mo6 by Molmil
Guanosine Monophosphate Synthase from Aspergillus fumigatus Af293
分子名称: GMP synthase [glutamine-hydrolyzing]
著者Nguyen, S, Bruning, J.B.
登録日2021-05-01
公開日2022-02-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural insights into the antifungal drug target guanosine monophosphate synthase from Aspergillus fumigatus.
Acta Crystallogr D Struct Biol, 78, 2022
7UU7
DownloadVisualize
BU of 7uu7 by Molmil
Crystal structure of the SARS-CoV-2 main protease in its apo-form
分子名称: 3C-like proteinase nsp5
著者Yang, K.S, Liu, W.R.
登録日2022-04-28
公開日2023-01-25
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献A Novel Y-Shaped, S-O-N-O-S-Bridged Cross-Link between Three Residues C22, C44, and K61 Is Frequently Observed in the SARS-CoV-2 Main Protease.
Acs Chem.Biol., 18, 2023
8QPT
DownloadVisualize
BU of 8qpt by Molmil
Crystal structure of pyrophosphatase from Ogataea parapolymorpha
分子名称: GLYCEROL, MAGNESIUM ION, inorganic diphosphatase
著者Matyuta, I.O, Rodina, E.V, Vorobyeva, N.N, Kurilova, S.A, Bezpalaya, E.Y, Boyko, K.M.
登録日2023-10-03
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The crystal structure of yeast mitochondrial type pyrophosphatase provides a model to study pathological mutations in its human ortholog.
Biochem.Biophys.Res.Commun., 738, 2024

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon