3I7N
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![BU of 3i7n by Molmil](/molmil-images/mine/3i7n) | Crystal Structure of DDB1 in Complex with the H-Box Motif of WDTC1 | 分子名称: | DNA damage-binding protein 1, WD and tetratricopeptide repeats protein 1 | 著者 | Li, T, Robert, E.I, Breugel, P.C.V, Strubin, M, Zheng, N. | 登録日 | 2009-07-08 | 公開日 | 2009-12-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat.Struct.Mol.Biol., 17, 2010
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3I7H
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![BU of 3i7h by Molmil](/molmil-images/mine/3i7h) | Crystal Structure of DDB1 in Complex with the H-Box Motif of HBX | 分子名称: | DNA damage-binding protein 1, X protein | 著者 | Li, T, Robert, E.I, Breugel, P.C.V, Strubin, M, Zheng, N. | 登録日 | 2009-07-08 | 公開日 | 2009-12-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat.Struct.Mol.Biol., 17, 2010
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2N5P
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![BU of 2n5p by Molmil](/molmil-images/mine/2n5p) | Universal base control oligonucleotide structure | 分子名称: | DNA_(5'-D(*AP*TP*GP*GP*AP*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3') | 著者 | Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W. | 登録日 | 2015-07-23 | 公開日 | 2016-09-07 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog. Nucleic Acids Res., 44, 2016
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3I7K
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![BU of 3i7k by Molmil](/molmil-images/mine/3i7k) | Crystal Structure of DDB1 in Complex with the H-Box Motif of WHX | 分子名称: | DNA damage-binding protein 1, X protein | 著者 | Li, T, Robert, E.I, Breugel, P.C.V, Strubin, M, Zheng, N. | 登録日 | 2009-07-08 | 公開日 | 2009-12-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat.Struct.Mol.Biol., 17, 2010
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3I8E
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![BU of 3i8e by Molmil](/molmil-images/mine/3i8e) | Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR42A | 分子名称: | DNA damage-binding protein 1, WD repeat-containing protein 42A | 著者 | Li, T, Robert, E.I, Breugel, P.C.V, Strubin, M, Zheng, N. | 登録日 | 2009-07-09 | 公開日 | 2009-12-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | 主引用文献 | A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat.Struct.Mol.Biol., 17, 2010
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7K5X
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![BU of 7k5x by Molmil](/molmil-images/mine/7k5x) | |
6T22
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![BU of 6t22 by Molmil](/molmil-images/mine/6t22) | N-terminal domain of EcoKMcrA restriction endonuclease (NEco) in complex with T5hmCGA target sequence | 分子名称: | DNA (5'-D(*GP*AP*AP*TP*(5HC)P*GP*AP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*TP*(5HC)P*GP*AP*TP*TP*C)-3'), EcoKMcrA modification dependent restriction endonuclease | 著者 | Slyvka, A, Zagorskaite, E, Czapinska, H, Sasnauskas, G, Bochtler, M. | 登録日 | 2019-10-07 | 公開日 | 2019-10-30 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | 主引用文献 | Crystal structure of the EcoKMcrA N-terminal domain (NEco): recognition of modified cytosine bases without flipping. Nucleic Acids Res., 47, 2019
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3I89
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![BU of 3i89 by Molmil](/molmil-images/mine/3i89) | Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR22 | 分子名称: | DNA damage-binding protein 1, WD repeat-containing protein 22 | 著者 | Li, T, Robert, E.I, Breugel, P.C.V, Strubin, M, Zheng, N. | 登録日 | 2009-07-09 | 公開日 | 2009-12-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat.Struct.Mol.Biol., 17, 2010
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3I8C
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![BU of 3i8c by Molmil](/molmil-images/mine/3i8c) | Crystal Structure of DDB1 in Complex with the H-Box Motif of WDR21A | 分子名称: | DNA damage-binding protein 1, WD repeat-containing protein 21A | 著者 | Li, T, Robert, E.I, Breugel, P.C.V, Strubin, M, Zheng, N. | 登録日 | 2009-07-09 | 公開日 | 2009-12-08 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | A promiscuous alpha-helical motif anchors viral hijackers and substrate receptors to the CUL4-DDB1 ubiquitin ligase machinery. Nat.Struct.Mol.Biol., 17, 2010
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6T93
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![BU of 6t93 by Molmil](/molmil-images/mine/6t93) | Nucleosome with OCT4-SOX2 motif at SHL-6 | 分子名称: | DNA (153-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Michael, A.K, Kempf, G, Cavadini, S, Bunker, R.D, Thoma, N.H. | 登録日 | 2019-10-25 | 公開日 | 2020-05-06 | 最終更新日 | 2024-05-22 | 実験手法 | ELECTRON MICROSCOPY (3.49 Å) | 主引用文献 | Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science, 368, 2020
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4BPW
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![BU of 4bpw by Molmil](/molmil-images/mine/4bpw) | Crystal structure of human primase bound to UTP | 分子名称: | DNA PRIMASE LARGE SUBUNIT, DNA PRIMASE SMALL SUBUNIT, MAGNESIUM ION, ... | 著者 | Kilkenny, M.L, Perera, R.L, Pellegrini, L. | 登録日 | 2013-05-28 | 公開日 | 2013-09-25 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (3.003 Å) | 主引用文献 | Structures of Human Primase Reveal Design of Nucleotide Elongation Site and Mode of Pol Alpha Tethering Proc.Natl.Acad.Sci.USA, 110, 2013
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6CRM
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![BU of 6crm by Molmil](/molmil-images/mine/6crm) | |
6PWX
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![BU of 6pwx by Molmil](/molmil-images/mine/6pwx) | Cryo-EM structure of RbBP5 bound to the nucleosome | 分子名称: | DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... | 著者 | Park, S.H, Ayoub, A, Lee, Y.T, Xu, J, Zhang, W, Zhang, B, Zhang, Y, Cianfrocco, M.A, Su, M, Dou, Y, Cho, U. | 登録日 | 2019-07-23 | 公開日 | 2019-12-18 | 最終更新日 | 2024-03-20 | 実験手法 | ELECTRON MICROSCOPY (4.2 Å) | 主引用文献 | Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nat Commun, 10, 2019
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1AN4
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![BU of 1an4 by Molmil](/molmil-images/mine/1an4) | STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF | 分子名称: | DNA (5'-D(*CP*AP*CP*CP*CP*GP*GP*TP*CP*AP*CP*GP*TP*GP*GP*CP*C P*TP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*TP*AP*GP*GP*CP*CP*AP*CP*GP*TP*GP*AP*CP*C P*GP*GP*GP*T)-3'), PROTEIN (UPSTREAM STIMULATORY FACTOR) | 著者 | Ferre-D'Amare, A.R, Pognonec, P, Roeder, R.G, Burley, S.K. | 登録日 | 1997-03-15 | 公開日 | 1997-09-17 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Structure and function of the b/HLH/Z domain of USF. EMBO J., 13, 1994
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3BDN
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![BU of 3bdn by Molmil](/molmil-images/mine/3bdn) | Crystal Structure of the Lambda Repressor | 分子名称: | DNA (5'-D(*DAP*DAP*DTP*DAP*DCP*DCP*DAP*DCP*DTP*DGP*DGP*DCP*DGP*DGP*DTP*DGP*DAP*DTP*DAP*DT)-3'), DNA (5'-D(*DTP*DAP*DTP*DAP*DTP*DCP*DAP*DCP*DCP*DGP*DCP*DCP*DAP*DGP*DTP*DGP*DGP*DTP*DAP*DT)-3'), Lambda Repressor | 著者 | Stayrook, S.E, Jaru-Ampornpan, P, Hochschild, A, Lewis, M. | 登録日 | 2007-11-15 | 公開日 | 2008-04-15 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (3.909 Å) | 主引用文献 | Crystal structure of the lambda repressor and a model for pairwise cooperative operator binding Nature, 452, 2008
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8VFY
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![BU of 8vfy by Molmil](/molmil-images/mine/8vfy) | |
7X5G
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![BU of 7x5g by Molmil](/molmil-images/mine/7x5g) | Nrf2 (A510Y)-MafG heterodimer bound with CsMBE2 | 分子名称: | DNA (5'-D(*CP*AP*CP*AP*GP*TP*GP*AP*CP*TP*CP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP*CP*TP*GP*T)-3'), Nuclear factor erythroid 2-related factor 2, ... | 著者 | Sengoku, T, Shiina, M, Suzuki, K, Hamada, K, Sato, K, Uchiyama, A, Okada, C, Baba, S, Ohta, T, Motohashi, H, Yamamoto, M, Ogata, K. | 登録日 | 2022-03-04 | 公開日 | 2022-11-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis of transcription regulation by CNC family transcription factor, Nrf2. Nucleic Acids Res., 50, 2022
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2N5O
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![BU of 2n5o by Molmil](/molmil-images/mine/2n5o) | Universal Base oligonucleotide structure | 分子名称: | DNA_(5'-D(*AP*TP*GP*GP*(4EN)P*GP*CP*TP*C)-3'), DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3') | 著者 | Spring-Connell, A.M, Evich, M.G, Seela, F, Germann, M.W. | 登録日 | 2015-07-23 | 公開日 | 2016-09-07 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog. Nucleic Acids Res., 44, 2016
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2CVR
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![BU of 2cvr by Molmil](/molmil-images/mine/2cvr) | NMR solution structure of sso7d mutant, K12L, 12 conformers | 分子名称: | DNA-binding protein 7a | 著者 | Arosio, I, Recca, T, Consonni, R, Alberti, E, Fusi, P, Zetta, L. | 登録日 | 2005-06-13 | 公開日 | 2006-08-29 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural Determinants Responsible for the Thermostability of Sso7d
and its Single Point Mutants To be Published
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5M1W
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![BU of 5m1w by Molmil](/molmil-images/mine/5m1w) | Structure of a stable G-hairpin | 分子名称: | DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3') | 著者 | Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L. | 登録日 | 2016-10-11 | 公開日 | 2017-03-01 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of a Stable G-Hairpin. J. Am. Chem. Soc., 139, 2017
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8F86
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![BU of 8f86 by Molmil](/molmil-images/mine/8f86) | SIRT6 bound to an H3K9Ac nucleosome | 分子名称: | DNA (148-MER), Histone H2A type 1, Histone H2B, ... | 著者 | Markert, J, Whedon, S, Wang, Z, Cole, P, Farnung, L. | 登録日 | 2022-11-21 | 公開日 | 2023-04-05 | 最終更新日 | 2024-03-13 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | Structural Basis of Sirtuin 6-Catalyzed Nucleosome Deacetylation. J.Am.Chem.Soc., 145, 2023
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5CO0
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![BU of 5co0 by Molmil](/molmil-images/mine/5co0) | Crystal Structure of the MTERF1 Y288A substitution bound to the termination sequence. | 分子名称: | DNA (5'-D(*AP*TP*TP*AP*CP*CP*GP*GP*GP*CP*TP*CP*TP*GP*CP*CP*AP*TP*CP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*CP*CP*CP*GP*GP*TP*AP*AP*T)-3'), POTASSIUM ION, ... | 著者 | Byrnes, J, Hauser, K, Norona, L, Mejia, E, Simmerling, C, Garcia-Diaz, M. | 登録日 | 2015-07-18 | 公開日 | 2015-11-25 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | Base Flipping by MTERF1 Can Accommodate Multiple Conformations and Occurs in a Stepwise Fashion. J.Mol.Biol., 428, 2016
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6FVN
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![BU of 6fvn by Molmil](/molmil-images/mine/6fvn) | DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide | 分子名称: | Beta sliding clamp, P7 peptide | 著者 | Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D. | 登録日 | 2018-03-04 | 公開日 | 2019-04-10 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (3.142 Å) | 主引用文献 | Peptide Interactions on Bacterial Sliding Clamps. Acs Infect Dis., 2019
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7KBE
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![BU of 7kbe by Molmil](/molmil-images/mine/7kbe) | |
5CRK
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![BU of 5crk by Molmil](/molmil-images/mine/5crk) | Crystal Structure of the MTERF1 F243A substitution bound to the termination sequence. | 分子名称: | DNA (5'-D(*AP*TP*TP*AP*CP*CP*GP*GP*GP*CP*TP*CP*TP*GP*CP*CP*AP*TP*CP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*CP*CP*CP*GP*GP*TP*AP*AP*T)-3'), Transcription termination factor 1, ... | 著者 | Byrnes, J, Hauser, K, Norona, L, Mejia, E, Simmerling, C, Garcia-Diaz, M. | 登録日 | 2015-07-23 | 公開日 | 2015-11-25 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.48 Å) | 主引用文献 | Base Flipping by MTERF1 Can Accommodate Multiple Conformations and Occurs in a Stepwise Fashion. J.Mol.Biol., 428, 2016
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