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6M1X
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Crystal structure of Phosphoserine Phosphatase in complex with 3-Phosphoglyceric Acid from Entamoeba histolytica
分子名称: 3-PHOSPHOGLYCERIC ACID, PHOSPHATE ION, Phosphoglycerate mutase family protein
著者Kumari, P, Gourinath, S.
登録日2020-02-26
公開日2021-03-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Structural analysis of EhPSP in complex with 3-phosphoglyceric acid from Entamoeba histolytica reveals a basis for its lack of phosphoglycerate mutase activity.
Int.J.Biol.Macromol., 178, 2021
7NQN
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Mycobacterium tuberculosis Cytochrome P450 CYP121 in complex with lead compound 14
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-[4-[2-(1~{H}-indol-3-yl)ethyl]pyrimidin-2-yl]morpholine, CHLORIDE ION, ...
著者Selvam, I.R.
登録日2021-03-01
公開日2022-02-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A new strategy for hit generation: Novel in cellulo active inhibitors of CYP121A1 from Mycobacterium tuberculosis via a combined X-ray crystallographic and phenotypic screening approach (XP screen).
Eur.J.Med.Chem., 230, 2022
2N3H
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Solution structure of DRB4 dsRBD2 (viz. DRB4(81-151))
分子名称: Double-stranded RNA-binding protein 4
著者Deshmukh, M, Chiliveri, S.
登録日2015-05-29
公開日2016-09-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017
2N3F
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Solution structure of both dsRBDs of DRB4 along with linker (viz. DRB4(1-153))
分子名称: Double-stranded RNA-binding protein 4
著者Deshmukh, M, Chiliveri, S.
登録日2015-05-29
公開日2016-09-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017
4MGN
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Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA
分子名称: MAGNESIUM ION, glyQS T box riboswitch, tRNA-glycine
著者Grigg, J.C, Ke, A.
登録日2013-08-28
公開日2013-10-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
Structure, 21, 2013
2JN5
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Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1
分子名称: Alpha-synuclein
著者Zhou, C.J, Hu, H.Y, Lin, D.H.
登録日2006-12-28
公開日2008-01-22
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Interaction with synphilin-1 promotes inclusion formation of alpha-synuclein: mechanistic insights and pathological implication.
Faseb J., 24, 2010
4MK7
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BU of 4mk7 by Molmil
Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with inhibitor 2 (3-(3-tert-butyl-4-methoxyphenyl)pyridin-2(1H)-one)
分子名称: 3-(3-tert-butyl-4-methoxyphenyl)pyridin-2(1H)-one, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
著者Harris, S.F, Wong, A.
登録日2013-09-04
公開日2013-10-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery of a Novel Series of Potent Non-Nucleoside Inhibitors of Hepatitis C Virus NS5B.
J.Med.Chem., 56, 2013
2I0H
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BU of 2i0h by Molmil
The structure of p38alpha in complex with an arylpyridazinone
分子名称: 2-(3-{(2-CHLORO-4-FLUOROPHENYL)[1-(2-CHLOROPHENYL)-6-OXO-1,6-DIHYDROPYRIDAZIN-3-YL]AMINO}PROPYL)-1H-ISOINDOLE-1,3(2H)-DIONE, GLYCEROL, Mitogen-activated protein kinase 14
著者Natarajan, S.R, Heller, S.T, Nam, K, Singh, S.B, Scapin, G, Patel, S, Thompson, J.E, Fitzgerald, C.E, O'Keefe, S.J.
登録日2006-08-10
公開日2006-10-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献p38 MAP Kinase Inhibitors Part 6: 2-Arylpyridazin-3-ones as templates for inhibitor design.
Bioorg.Med.Chem.Lett., 16, 2006
7WIT
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BU of 7wit by Molmil
Structure of SUR1 in complex with mitiglinide
分子名称: (2S)-4-[(3aR,7aS)-1,3,3a,4,5,6,7,7a-octahydroisoindol-2-yl]-4-oxidanylidene-2-(phenylmethyl)butanoic acid, ADENOSINE-5'-TRIPHOSPHATE, ATP-sensitive inward rectifier potassium channel 11,ATP-binding cassette sub-family C member 8 isoform X1
著者Chen, L, Wang, M.M.
登録日2022-01-04
公開日2022-11-16
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Structural Insights Into the High Selectivity of the Anti-Diabetic Drug Mitiglinide
Front Pharmacol, 13, 2022
8TZZ
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SpG Cas9 with NGC PAM DNA target
分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(P*CP*GP*TP*TP*TP*GP*TP*AP*CP*TP*GP*CP*AP*GP*CP*G)-3'), DNA (5'-D(P*TP*CP*TP*CP*AP*TP*CP*TP*TP*TP*AP*TP*GP*CP*GP*TP*C)-3'), ...
著者Bravo, J.P.K, Hibshman, G.N, Taylor, D.W.
登録日2023-08-28
公開日2024-05-01
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.56 Å)
主引用文献Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8U3Y
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BU of 8u3y by Molmil
SpG Cas9 with NGG PAM DNA target
分子名称: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(P*CP*GP*TP*TP*TP*GP*TP*AP*CP*TP*CP*CP*AP*GP*CP*G)-3'), DNA (5'-D(P*TP*CP*TP*CP*AP*TP*CP*TP*TP*TP*AP*TP*GP*CP*GP*TP*C)-3'), ...
著者Bravo, J.P.K, Hibshman, G.N, Taylor, D.W.
登録日2023-09-08
公開日2024-05-01
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
7N2W
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The crystal structure of an FMN-dependent NADH-azoreductase, AzoA in complex with Red 40
分子名称: 6-hydroxy-5-[(E)-(2-methoxy-5-methyl-4-sulfophenyl)diazenyl]naphthalene-2-sulfonic acid, FLAVIN MONONUCLEOTIDE, FMN dependent NADH:quinone oxidoreductase
著者Arcinas, A.J, Fedorov, E, Kelly, L, Almo, S.C, Ghosh, A.
登録日2021-05-30
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Uncovering a novel mechanism of enzyme activation in multimeric azoreductases
To Be Published
4M1R
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BU of 4m1r by Molmil
Structure of a novel cellulase 5 from a sugarcane soil metagenomic library
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cellulase 5
著者Paiva, J.H, Alvarez, T.M, Cairo, J.P, Paixao, D.A, Almeida, R.A, Tonoli, C.C.C, Ruiz, D.M, Ruller, R, Santos, C.R, Squina, F.M, Murakami, M.T.
登録日2013-08-03
公開日2014-02-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and function of a novel cellulase 5 from sugarcane soil metagenome.
Plos One, 8, 2013
2I53
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BU of 2i53 by Molmil
Crystal structure of Cyclin K
分子名称: ACETATE ION, Cyclin K
著者Baek, K, Brown, R.S, Birrane, G, Ladias, J.A.A.
登録日2006-08-23
公開日2007-01-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal Structure of Human Cyclin K, a Positive Regulator of Cyclin-dependent Kinase 9.
J.Mol.Biol., 366, 2007
7N2X
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BU of 7n2x by Molmil
The crystal structure of an FMN-dependent NADH:quinone oxidoreductase, AzoR from Escherichia coli
分子名称: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-AMINO-ACRYLIC ACID, ...
著者Arcinas, A.J, Fedorov, E, Kelly, L, Almo, S.C, Ghosh, A.
登録日2021-05-30
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Uncovering a novel mechanism of enzyme activation in multimeric azoreductases
To Be Published
4MGM
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BU of 4mgm by Molmil
Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly
分子名称: MAGNESIUM ION, tRNA glycine
著者Grigg, J.C, Ke, A.
登録日2013-08-28
公開日2013-10-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
Structure, 21, 2013
8WDG
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BU of 8wdg by Molmil
Subatomic crystal structure of glucose isomerase from Streptomyces rubiginosus
分子名称: MAGNESIUM ION, Xylitol, Xylose isomerase
著者Nam, K.H.
登録日2023-09-15
公開日2023-10-04
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Xylitol binding to the M1 site of glucose isomerase induces a conformational change in the substrate binding channel.
Biochem.Biophys.Res.Commun., 682, 2023
2JMW
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BU of 2jmw by Molmil
Structure of DNA-Binding Domain of Arabidopsis GT-1
分子名称: DNA binding protein GT-1
著者Nagata, T, Niyada, E, Noto, K, Ikeda, Y, Yamamoto, Y, Uesugi, S, Murata, J, Hiratsuka, K, Katahira, M.
登録日2006-12-11
公開日2007-12-11
最終更新日2023-12-20
実験手法SOLUTION NMR
主引用文献Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation.
Proteins, 78, 2010
2JNH
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Solution Structure of the UBA Domain from Cbl-b
分子名称: E3 ubiquitin-protein ligase CBL-B
著者Zhou, C, Zhou, Z, Lin, D, Hu, H.
登録日2007-01-24
公開日2008-02-05
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Differential ubiquitin binding of the UBA domains from human c-Cbl and Cbl-b: NMR structural and biochemical insights
Protein Sci., 17, 2008
2YPD
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BU of 2ypd by Molmil
Crystal structure of the Jumonji domain of human Jumonji domain containing 1C protein
分子名称: 2-(ETHYLMERCURI-THIO)-BENZOIC ACID, PROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C, SODIUM ION
著者Vollmar, M, Johansson, C, Krojer, T, Berridge, G, Burgess-Brown, N, Strain-Damerell, C, Froese, S, Williams, E, Goubin, S, Coutandin, D, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.
登録日2012-10-30
公開日2012-12-12
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of the Jumonji Domain of Human Jumonji Domain Containing 1C Protein
To be Published
3D3X
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Crystal structure of botulinum neurotoxin serotype E catalytic domain in complex with SNAP-25 substrate peptide
分子名称: SNAP-25 substrate peptide, SULFATE ION, Type E botulinum toxin, ...
著者Agarwal, R, Swaminathan, S.
登録日2008-05-13
公開日2008-07-08
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献SNAP-25 substrate peptide (residues 180-183) binds to but bypasses cleavage by catalytically active Clostridium botulinum neurotoxin E.
J.Biol.Chem., 283, 2008
8WG5
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BU of 8wg5 by Molmil
Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome
分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
著者Ai, H.S, He, Z.Z, Deng, Z.H, Liu, L.
登録日2023-09-20
公開日2023-12-27
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Structural and mechanistic basis for nucleosomal H2AK119 deubiquitination by single-subunit deubiquitinase USP16.
Nat.Struct.Mol.Biol., 2024
2JES
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BU of 2jes by Molmil
Portal protein (gp6) from bacteriophage SPP1
分子名称: CALCIUM ION, MERCURY (II) ION, PORTAL PROTEIN, ...
著者Lebedev, A.A, Krause, M.H, Isidro, A.L, Vagin, A.A, Orlova, E.V, Turner, J, Dodson, E.J, Tavares, P, Antson, A.A.
登録日2007-01-21
公開日2007-03-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural Framework for DNA Translocation Via the Viral Portal Protein
Embo J., 26, 2007
4MK8
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BU of 4mk8 by Molmil
Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with inhibitor 4 (N-(4-{2-[3-tert-butyl-2-methoxy-5-(2-oxo-1,2-dihydropyridin-3-yl)phenyl]ethyl}phenyl)methanesulfonamide)
分子名称: DIMETHYL SULFOXIDE, GLYCEROL, N-(4-{2-[3-tert-butyl-2-methoxy-5-(2-oxo-1,2-dihydropyridin-3-yl)phenyl]ethyl}phenyl)methanesulfonamide, ...
著者Harris, S.F, Wong, A.
登録日2013-09-04
公開日2013-10-09
最終更新日2014-01-15
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Discovery of a Novel Series of Potent Non-Nucleoside Inhibitors of Hepatitis C Virus NS5B.
J.Med.Chem., 56, 2013
7DWA
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Structure of a novel beta-mannanase BaMan113A with mannotriose, N236Y mutation
分子名称: Endo-beta-1,4-mannanase, beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose
著者Liu, W.T, Liu, W.D, Zheng, Y.Y.
登録日2021-01-15
公開日2021-06-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Functional and structural investigation of a novel beta-mannanase BaMan113A from Bacillus sp. N16-5.
Int.J.Biol.Macromol., 182, 2021

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