2YPD

Crystal structure of the Jumonji domain of human Jumonji domain containing 1C protein

Summary for 2YPD

Related2YPR
DescriptorPROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C, 2-(ETHYLMERCURI-THIO)-BENZOIC ACID, SODIUM ION, ... (4 entities in total)
Functional Keywordsoxidoreductase
Biological sourceHOMO SAPIENS (HUMAN)
Cellular locationNucleus  Q15652
Total number of polymer chains2
Total molecular weight94638.32
Authors
Primary citation
Vollmar, M.,Johansson, C.,Krojer, T.,Strain-Damerell, C.,Froese, S.,Williams, E.,Coutandin, D.,von Delft, F.,Weigelt, J.,Arrowsmith, C.H.,Bountra, C.,Edwards, A.,Oppermann, U.
Crystal Structure of the Jumonji Domain of Human Jumonji Domain Containing 1C Protein
To be Published,
Experimental method
X-RAY DIFFRACTION (2.1 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.244200.5%0.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2ypd
no rotation
Molmil generated image of 2ypd
rotated about x axis by 90°
Molmil generated image of 2ypd
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2ypd
no rotation
Molmil generated image of 2ypd
rotated about x axis by 90°
Molmil generated image of 2ypd
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2ypd.pdb2.gz [109.77 KB])
Coordinate files for Biological unit (2ypd.pdb1.gz [110.52 KB])