PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3ETL	RadA recombinase from Methanococcus maripaludis in complex with AMPPNP 分子名称: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Li, Y, He, Y, Luo, Y. 登録日 2008-10-08 公開日 2009-05-05 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis. Acta Crystallogr.,Sect.D, 65, 2009
3EWA	RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and ammonium ions 分子名称: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Li, Y, He, Y, Luo, Y. 登録日 2008-10-14 公開日 2009-05-05 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis. Acta Crystallogr.,Sect.D, 65, 2009
7E1F	Native-DBD 分子名称: DNA-binding response regulator 著者 Hong, S, Zhang, P. 登録日 2021-02-01 公開日 2022-02-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.447 Å) 主引用文献 Structural basis of phosphorylation-induced activation of the response regulator VbrR. Acta Biochim.Biophys.Sin., 2023
7E1D	Se-DBD 分子名称: DNA-binding response regulator 著者 Hong, S, Zhang, P. 登録日 2021-02-01 公開日 2022-02-09 最終更新日 2023-02-22 実験手法 X-RAY DIFFRACTION (2.002 Å) 主引用文献 Structural basis of phosphorylation-induced activation of the response regulator VbrR. Acta Biochim.Biophys.Sin., 2023
1TRO	CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION 分子名称: DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3'), PROTEIN (TRP REPRESSOR), TRYPTOPHAN 著者 Otwinowski, Z, Schevitz, R.W, Zhang, R.-G, Lawson, C.L, Joachimiak, A, Marmorstein, R, Luisi, B.F, Sigler, P.B. 登録日 1992-08-30 公開日 1994-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of trp repressor/operator complex at atomic resolution. Nature, 335, 1988
7AQS	Crystal structure of E. coli DPS in space group P1 分子名称: DNA protection during starvation protein, FE (III) ION 著者 Jakob, R.P, Pipercevic, J, Righetto, R, Goldie, K, Stahlberg, H, Maier, T, Hiller, S. 登録日 2020-10-22 公開日 2021-09-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia. Biochim Biophys Acta Biomembr, 1863, 2021
3EW9	RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and potassium ions 分子名称: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Li, Y, He, Y, Luo, Y. 登録日 2008-10-14 公開日 2009-05-05 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis. Acta Crystallogr.,Sect.D, 65, 2009
3WOE	Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain 分子名称: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein 著者 Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S. 登録日 2013-12-26 公開日 2014-03-12 最終更新日 2015-03-25 実験手法 X-RAY DIFFRACTION (2.351 Å) 主引用文献 Structural basis for promoter specificity switching of RNA polymerase by a phage factor. Genes Dev., 28, 2014
6QWF	The Transcriptional Regulator PrfA-A94V mutant from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif 分子名称: DNA (30-MER), GLYCEROL, Listeriolysin positive regulatory factor A 著者 Hall, M, Grundstrom, C, Hansen, S, Brannstrom, K, Johansson, J, Sauer-Eriksson, A.E. 登録日 2019-03-05 公開日 2020-04-01 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes. J.Bacteriol., 202, 2020
6QWK	The Transcriptional Regulator PrfA-L140F mutant from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif 分子名称: DNA (30-MER), GLYCEROL, Listeriolysin positive regulatory factor A 著者 Hall, M, Grundstrom, C, Hansen, S, Brannstrom, K, Johansson, J, Sauer-Eriksson, A.E. 登録日 2019-03-05 公開日 2020-04-01 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes. J.Bacteriol., 202, 2020
8OK2	Bipartite interaction of TOPBP1 with the GINS complex 分子名称: DNA replication complex GINS protein PSF1, DNA replication complex GINS protein PSF2, DNA replication complex GINS protein PSF3, ... 著者 Day, M, Oliver, A.W, Pearl, L.H. 登録日 2023-03-26 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 TopBP1 utilises a bipartite GINS binding mode to support genome replication. Nat Commun, 15, 2024
1DN6	THE CRYSTAL STRUCTURE OF D(GGATGGGAG). AN ESSENTIAL PART OF THE BINDING SITE FOR TRANSCRIPTION FACTOR IIIA 分子名称: DNA (5'-D(*CP*TP*CP*CP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*GP*GP*AP*G)-3') 著者 McCall, M, Brown, T, Hunter, W.N, Kennard, O. 登録日 1987-05-11 公開日 1988-01-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The crystal structure of d(GGATGGGAG): an essential part of the binding site for transcription factor IIIA. Nature, 322, 1986
6GO3	TdT chimera (Loop1 of pol mu) - apoenzyme 分子名称: DNA nucleotidylexotransferase,DNA-directed DNA/RNA polymerase mu,DNA nucleotidylexotransferase 著者 Loc'h, J, Gerodimos, C.A, Rosario, S, Lieber, M.R, Delarue, M. 登録日 2018-06-01 公開日 2019-06-05 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural evidence for an intransbase selection mechanism involving Loop1 in polymerase mu at an NHEJ double-strand break junction. J.Biol.Chem., 294, 2019
5X6O	Intact ATR/Mec1-ATRIP/Ddc2 complex 分子名称: DNA damage checkpoint protein LCD1, Serine/threonine-protein kinase MEC1 著者 Wang, X, Ran, T, Cai, G. 登録日 2017-02-22 公開日 2017-12-20 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 3.9 angstrom structure of the yeast Mec1-Ddc2 complex, a homolog of human ATR-ATRIP. Science, 358, 2017
4GK5	Crystal structure of human Rev3-Rev7-Rev1-Polkappa complex 分子名称: DNA polymerase kappa, DNA polymerase zeta catalytic subunit, DNA repair protein REV1, ... 著者 Tao, J, Min, X, Wei, X. 登録日 2012-08-10 公開日 2013-03-13 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.21 Å) 主引用文献 Structural insights into the assembly of human translesion polymerase complexes Protein Cell, 3, 2012
1DML	CRYSTAL STRUCTURE OF HERPES SIMPLEX UL42 BOUND TO THE C-TERMINUS OF HSV POL 分子名称: DNA POLYMERASE, DNA POLYMERASE PROCESSIVITY FACTOR 著者 Zuccola, H.J, Filman, D.J, Coen, D.M, Hogle, J.M. 登録日 1999-12-14 公開日 2000-03-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase. Mol.Cell, 5, 2000
6M4G	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2 分子名称: DNA (93-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ... 著者 Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q. 登録日 2020-03-06 公開日 2020-09-23 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2. Embo J., 40, 2021
6M4H	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2 分子名称: DNA (103-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ... 著者 Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q. 登録日 2020-03-07 公開日 2020-09-23 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2. Embo J., 40, 2021
4GK0	Crystal structure of human Rev3-Rev7-Rev1 complex 分子名称: DNA polymerase zeta catalytic subunit, DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B 著者 Tao, J, Min, X, Wei, X. 登録日 2012-08-10 公開日 2013-03-13 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural insights into the assembly of human translesion polymerase complexes Protein Cell, 3, 2012
8SXT	Structure of LINE-1 ORF2p with template:primer hybrid 分子名称: DNA primer, LINE-1 retrotransposable element ORF2 protein, MAGNESIUM ION, ... 著者 van Eeuwen, T, Taylor, M.S, Rout, M.P. 登録日 2023-05-24 公開日 2024-01-10 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structures, functions and adaptations of the human LINE-1 ORF2 protein. Nature, 626, 2024
7Z6O	X-Ray studies of Ku70/80 reveal the binding site for IP6 分子名称: DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*GP*TP*TP*TP*AP*T)-3'), DNA (5'-D(P*AP*AP*AP*TP*AP*AP*AP*CP*TP*AP*AP*AP*AP*AP*C)-3'), INOSITOL HEXAKISPHOSPHATE, ... 著者 Varela, P.F, Charbonnier, J.B. 登録日 2022-03-14 公開日 2023-08-30 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Structural and functional basis of inositol hexaphosphate stimulation of NHEJ through stabilization of Ku-XLF interaction. Nucleic Acids Res., 51, 2023
6PR5	Cryo-EM structure of HzTransib strand transfer complex (STC) 分子名称: DNA (30-MER), DNA (39-MER), DNA (5'-D(*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*TP*CP*A)-3'), ... 著者 Liu, C, Yang, Y, Schatz, D.G. 登録日 2019-07-10 公開日 2019-10-09 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structures of a RAG-like transposase during cut-and-paste transposition. Nature, 575, 2019
3O9X	Structure of the E. coli antitoxin MqsA (YgiT/b3021) in complex with its gene promoter 分子名称: DNA (26-MER), GLYCEROL, Uncharacterized HTH-type transcriptional regulator ygiT, ... 著者 Brown, B.L, Peti, W, Page, R. 登録日 2010-08-04 公開日 2010-11-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.0999 Å) 主引用文献 Structure of the Escherichia coli Antitoxin MqsA (YgiT/b3021) Bound to Its Gene Promoter Reveals Extensive Domain Rearrangements and the Specificity of Transcriptional Regulation. J.Biol.Chem., 286, 2011
4Z2E	Quinolone(Trovafloxacin)-DNA cleavage complex of gyrase from S. pneumoniae 分子名称: DNA gyrase subunit A, DNA gyrase subunit B, MAGNESIUM ION, ... 著者 Laponogov, I, Veselkov, D.A, Pan, X.-S, Selvarajah, J, Crevel, I.M.-T, Fisher, L.M, Sanderson, M.R. 登録日 2015-03-29 公開日 2016-09-14 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae To Be Published
2F3I	Solution Structure of a Subunit of RNA Polymerase II 分子名称: DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide 著者 Kang, X, Jin, C. 登録日 2005-11-21 公開日 2006-05-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases J.Biol.Chem., 281, 2006

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