PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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7YPA	Cryo-EM structure of Escherichia coli hairpin-nucleation complex of transcription termination (TTC-hairpin) 分子名称: DNA (31-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 You, L.L, Zhang, Y. 登録日 2022-08-03 公開日 2022-11-16 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Structural basis for intrinsic transcription termination. Nature, 613, 2023
8Q3B	The closed state of the ASFV apo-RNA polymerase 分子名称: DNA-directed RNA polymerase RPB1 homolog, DNA-directed RNA polymerase RPB10 homolog, DNA-directed RNA polymerase RPB2 homolog, ... 著者 Pilotto, S, Sykora, M, Cackett, G, Werner, F. 登録日 2023-08-03 公開日 2024-02-14 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Structure of the recombinant RNA polymerase from African Swine Fever Virus. Nat Commun, 15, 2024
8Q3K	The open state of the ASFV apo-RNA polymerase 分子名称: DNA-directed RNA polymerase RPB1 homolog, DNA-directed RNA polymerase RPB10 homolog, DNA-directed RNA polymerase RPB2 homolog, ... 著者 Pilotto, S, Sykora, M, Cackett, G, Werner, F. 登録日 2023-08-04 公開日 2024-02-14 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Structure of the recombinant RNA polymerase from African Swine Fever Virus. Nat Commun, 15, 2024
6NSM	TetR family transcriptional regulator CifR C99T-C107S-C181R Cysteines mutant complexed with 26bp double-strand operator DNA 分子名称: DNA (26-MER), TetR family transcriptional regulator CifR 著者 He, S, Simard, A.R, Madden, D.R. 登録日 2019-01-25 公開日 2020-01-29 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa Biorxiv, 2024
7B7U	Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Fianu, I, Dienemann, C, Aibara, S, Schilbach, S, Cramer, P. 登録日 2020-12-11 公開日 2021-05-19 最終更新日 2022-02-16 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Commun Biol, 4, 2021
8AD1	RNA polymerase at U-rich pause bound to RNA putL triple mutant - pause prone, closed clamp state 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Dey, S, Weixlbaumer, A. 登録日 2022-07-07 公開日 2022-10-19 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
1SMY	Structural basis for transcription regulation by alarmone ppGpp 分子名称: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... 著者 Artsimovitch, I, Patlan, V, Sekine, S, Vassylyeva, M.N, Hosaka, T, Ochi, K, Yokoyama, S, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-03-10 公開日 2004-05-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for transcription regulation by alarmone ppGpp Cell(Cambridge,Mass.), 117, 2004
5C44	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-17 公開日 2015-08-26 実験手法 X-RAY DIFFRACTION (3.95 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
7ASU	Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III 分子名称: DNA-directed RNA polymerase III subunit RPC5, ZINC ION 著者 Vannini, A, Abascal-Palacios, G, Ramsay, E.P. 登録日 2020-10-28 公開日 2020-12-30 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Structure of human RNA polymerase III. Nat Commun, 11, 2020
6MGM	Helix-Loop-helix motif of mouse DNA-binding protein inhibitor ID-1 分子名称: DNA-binding protein inhibitor ID-1 著者 Benezra, R, Pavletich, N.P, Goldgur, Y, Gall, A.-L. 登録日 2018-09-14 公開日 2019-09-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.791 Å) 主引用文献 A Small-Molecule Pan-Id Antagonist Inhibits Pathologic Ocular Neovascularization. Cell Rep, 29, 2019
6FLQ	CryoEM structure of E.coli RNA polymerase paused elongation complex bound to NusA 分子名称: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Guo, X, Weixlbaumer, A. 登録日 2018-01-26 公開日 2018-03-21 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural Basis for NusA Stabilized Transcriptional Pausing. Mol. Cell, 69, 2018
5C4X	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-18 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
6GML	Structure of paused transcription complex Pol II-DSIF-NELF 分子名称: DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Vos, S.M, Farnung, L, Urlaub, H, Cramer, P. 登録日 2018-05-27 公開日 2018-09-05 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of paused transcription complex Pol II-DSIF-NELF. Nature, 560, 2018
5C4A	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Barnes, C.O, Calero, M, Malik, I, Saphr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. 登録日 2015-06-17 公開日 2015-08-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
4TMA	Crystal structure of gyrase bound to its inhibitor YacG 分子名称: DNA gyrase inhibitor YacG, DNA gyrase subunit A, DNA gyrase subunit B, ... 著者 Vos, S.M, Lyubimov, A.Y, Hershey, D.M, Schoeffler, A.J, Berger, J.M. 登録日 2014-05-31 公開日 2014-07-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Direct control of type IIA topoisomerase activity by a chromosomally encoded regulatory protein. Genes Dev., 28, 2014
8EVJ	CX3CR1 nucleosome bound PU.1 and C/EBPa 分子名称: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Guan, R, Bai, Y, Lian, T. 登録日 2022-10-20 公開日 2023-11-01 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha. Nat.Struct.Mol.Biol., 31, 2024
8EVI	CX3CR1 nucleosome and PU.1 complex containing disulfide bond mutations 分子名称: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Lian, T, Guan, R, Bai, Y. 登録日 2022-10-20 公開日 2023-11-01 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.64 Å) 主引用文献 Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha. Nat.Struct.Mol.Biol., 31, 2024
8EVH	CX3CR1 nucleosome and wild type PU.1 complex 分子名称: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Lian, T, Guan, R, Bai, Y. 登録日 2022-10-20 公開日 2023-11-01 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha. Nat.Struct.Mol.Biol., 31, 2024
8W9E	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2 分子名称: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... 著者 Wang, C, Zhan, X. 登録日 2023-09-05 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8W9F	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 3 分子名称: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... 著者 Wang, C, Zhan, X. 登録日 2023-09-05 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
6L8N	Crystal structure of the K. lactis Rad5 分子名称: DNA repair protein RAD5, ZINC ION 著者 Shen, M, Xiang, S. 登録日 2019-11-06 公開日 2020-11-11 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural basis for the multi-activity factor Rad5 in replication stress tolerance. Nat Commun, 12, 2021
8H0V	RNA polymerase II transcribing a chromatosome (type I) 分子名称: DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2022-09-30 公開日 2022-12-07 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1. Nat Commun, 13, 2022
8H0W	RNA polymerase II transcribing a chromatosome (type II) 分子名称: DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2022-09-30 公開日 2022-12-07 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1. Nat Commun, 13, 2022
8W9D	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 1 分子名称: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... 著者 Wang, C, Zhan, X. 登録日 2023-09-05 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8HE5	RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome 分子名称: DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ... 著者 Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H. 登録日 2022-11-07 公開日 2023-07-05 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (6.95 Å) 主引用文献 Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023

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