PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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6KJ6	cryo-EM structure of Escherichia coli Crl transcription activation complex 分子名称: DNA (51-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Xu, J, Zhang, Y. 登録日 2019-07-21 公開日 2020-01-01 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Crl activates transcription by stabilizing active conformation of the master stress transcription initiation factor. Elife, 8, 2019
9BNA	RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG) 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Westhof, E. 登録日 1990-02-01 公開日 1991-04-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a comparative analysis of the solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG). J.Biomol.Struct.Dyn., 5, 1987
2R92	Elongation complex of RNA polymerase II with artificial RdRP scaffold 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Lehmann, E, Brueckner, F, Cramer, P. 登録日 2007-09-12 公開日 2007-11-27 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007
6S1M	Human polymerase delta holoenzyme Conformer 1 分子名称: DNA polymerase delta catalytic subunit, DNA polymerase delta subunit 2, DNA polymerase delta subunit 3, ... 著者 Lancey, C, Hamdan, S.M, De Biasio, A. 登録日 2019-06-19 公開日 2019-12-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.27 Å) 主引用文献 Structure of the processive human Pol delta holoenzyme. Nat Commun, 11, 2020
6S1N	Human polymerase delta holoenzyme Conformer 2 分子名称: DNA polymerase delta catalytic subunit, DNA polymerase delta subunit 2, DNA polymerase delta subunit 3, ... 著者 Lancey, C, Hamdan, S.M, De Biasio, A. 登録日 2019-06-19 公開日 2019-12-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.86 Å) 主引用文献 Structure of the processive human Pol delta holoenzyme. Nat Commun, 11, 2020
2R93	Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Lehmann, E, Brueckner, F, Cramer, P. 登録日 2007-09-12 公開日 2007-11-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007
6S1O	Human polymerase delta holoenzyme Conformer 3 分子名称: DNA polymerase delta catalytic subunit, DNA polymerase delta subunit 2, DNA polymerase delta subunit 3, ... 著者 Lancey, C, Hamdan, S.M, De Biasio, A. 登録日 2019-06-19 公開日 2019-12-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (8.1 Å) 主引用文献 Structure of the processive human Pol delta holoenzyme. Nat Commun, 11, 2020
8TVP	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state) 分子名称: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-18 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVV	Cryo-EM structure of backtracked Pol II 分子名称: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-18 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVX	Cryo-EM structure of CPD-stalled Pol II (Conformation 2) 分子名称: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-18 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVY	Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state) 分子名称: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-18 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVW	Cryo-EM structure of CPD-stalled Pol II (conformation 1) 分子名称: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-18 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVS	Cryo-EM structure of backtracked Pol II in complex with Rad26 分子名称: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-18 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TUG	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state) 分子名称: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... 著者 Sarsam, R.D, Lahiri, I, Leschziner, A.E. 登録日 2023-08-16 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
6TNZ	Human polymerase delta-FEN1-PCNA toolbelt 分子名称: DNA polymerase delta catalytic subunit, DNA polymerase delta subunit 2, DNA polymerase delta subunit 3, ... 著者 Lancey, C, Hamdan, S.M, De Biasio, A. 登録日 2019-12-10 公開日 2019-12-18 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.05 Å) 主引用文献 Structure of the processive human Pol delta holoenzyme. Nat Commun, 11, 2020
6TNY	Processive human polymerase delta holoenzyme 分子名称: DNA polymerase delta catalytic subunit, DNA polymerase delta subunit 2, DNA polymerase delta subunit 3, ... 著者 Lancey, C, Hamdan, S.M, De Biasio, A. 登録日 2019-12-10 公開日 2019-12-18 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Structure of the processive human Pol delta holoenzyme. Nat Commun, 11, 2020
8WWO	Crystal structure of the AFSV topoisomerase ATPase domain in complex with AMPPNP 分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Kuang, W, Deng, Z. 登録日 2023-10-26 公開日 2024-02-21 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure-function analysis of the ATPase domain of African swine fever virus topoisomerase. Mbio, 15, 2024
7S01	X-ray structure of the phage AR9 non-virion RNA polymerase holoenzyme in complex with a forked oligonucleotide containing the P077 promoter 分子名称: DNA-directed RNA polymerase, DNA-directed RNA polymerase beta subunit, DNA-directed RNA polymerase beta' subunit, ... 著者 Leiman, P.G, Sokolova, M.L, Gordeeva, J, Fraser, A, Severinov, K.V. 登録日 2021-08-28 公開日 2022-07-06 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase. Nat Commun, 13, 2022
8RBX	Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P. 登録日 2023-12-05 公開日 2024-02-07 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 629, 2024
6KOP	Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 9 nt 分子名称: DNA (5'-D(*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*TP*G)-3'), DNA (5'-D(*TP*TP*GP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Li, L, Zhang, Y. 登録日 2019-08-12 公開日 2020-03-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.303 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6KOQ	Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 10 nt 分子名称: DNA (5'-D(*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*TP*G)-3'), DNA (5'-D(*TP*TP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Li, L, Zhang, Y. 登録日 2019-08-12 公開日 2020-03-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.353 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6WVJ	Cryo-EM structure of Bacillus subtilis RNA Polymerase elongation complex 分子名称: DNA (5'-D(*TP*GP*TP*CP*GP*GP*GP*CP*GP*TP*CP*CP*GP*CP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*AP*CP*GP*CP*CP*CP*GP*AP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Newing, T, Tolun, G, Oakley, A.J. 登録日 2020-05-06 公開日 2020-11-18 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Molecular basis for RNA polymerase-dependent transcription complex recycling by the helicase-like motor protein HelD. Nat Commun, 11, 2020
5VZM	Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin 分子名称: DNA repair protein REV1, Ubiquitin 著者 Cui, G, Botuyan, M.V, Mer, G. 登録日 2017-05-29 公開日 2018-05-23 最終更新日 2019-12-04 実験手法 SOLUTION NMR 主引用文献 Structural Basis for the Interaction of Mutasome Assembly Factor REV1 with Ubiquitin. J. Mol. Biol., 430, 2018
8P2I	Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation with Spt4/5 分子名称: DNA-directed RNA polymerase subunit Rpo10, DNA-directed RNA polymerase subunit Rpo11, DNA-directed RNA polymerase subunit Rpo12, ... 著者 Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-05-16 公開日 2024-04-24 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024
8OKI	Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5 分子名称: DNA Non-Template Strand, DNA Template Strand, DNA-directed RNA polymerase subunit Rpo10, ... 著者 Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-03-28 公開日 2024-04-24 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024

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