PDB: 215 件ウェブページステータス検索Chemie searchBIRD

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2J1E	High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc 分子名称: CALCIUM ION, HYALURONIDASE, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose 著者 Ficko-Blean, E, Boraston, A.B. 登録日 2006-08-10 公開日 2006-09-20 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor J.Biol.Chem., 281, 2006
2JD9	Structure of a pectin binding carbohydrate binding module determined in an orthorhombic crystal form. 分子名称: CALCIUM ION, YECBM32 著者 Abbott, D.W, Boraston, A.B. 登録日 2007-01-05 公開日 2007-01-16 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Identification and Characterization of a Novel Periplasmic Polygalacturonic Acid Binding Protein from Yersinia Enterolitica J.Mol.Biol., 367, 2007
2KD7	Solution NMR structure of F5/8 type C-terminal domain of a putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR324B 分子名称: Putative chitobiase 著者 Eletsky, A, Mills, J.L, Lee, H, Lee, D, Jiang, M, Ciccosanti, C, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Prestegard, J.H, Szyperski, T, Northeast Structural Genomics Consortium (NESG) 登録日 2009-01-04 公開日 2009-02-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of F5/8 type C-terminal domain of a putative chitobiase from Bacteroides thetaiotaomicron. To be Published
2LS6	Solution NMR Structure of a Non-canonical galactose-binding CBM32 from Clostridium perfringens 分子名称: Hyaluronoglucosaminidase 著者 Grondin, J.M, Chitayat, S, Ficko-Blean, E, Boraston, A.B, Smith, S.P. 登録日 2012-04-20 公開日 2013-05-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 An unusual mode of galactose recognition by a family 32 carbohydrate-binding module. J.Mol.Biol., 426, 2014
2RVA	Solution structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5 分子名称: Glucanase 著者 Shinya, S, Nishimura, S, Fukamizo, T. 登録日 2015-05-13 公開日 2016-04-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase. Biochem.J., 473, 2016
2RV9	Solution structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5 分子名称: Glucanase 著者 Shinya, S, Nishimura, S, Fukamizo, T. 登録日 2015-05-12 公開日 2016-04-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase. Biochem.J., 473, 2016
2W1U	A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ACETATE ION, ... 著者 Ficko-Blean, E, Boraston, A.B. 登録日 2008-10-20 公開日 2009-05-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2W1Q	Unique ligand binding specificity for a family 32 Carbohydrate- Binding Module from the Mu toxin produced by Clostridium perfringens 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ... 著者 Ficko-Blean, E, Boraston, A.B. 登録日 2008-10-20 公開日 2009-05-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2WDB	A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,2) mannose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, CALCIUM ION, HYALURONOGLUCOSAMINIDASE 著者 Ficko-Blean, E, Boraston, A.B. 登録日 2009-03-23 公開日 2009-05-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2W1S	Unique ligand binding specificity of a family 32 Carbohydrate-Binding Module from the Mu toxin produced by Clostridium perfringens 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ... 著者 Ficko-Blean, E, Boraston, A.B. 登録日 2008-10-20 公開日 2009-05-05 最終更新日 2019-10-23 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2V72	The structure of the family 32 CBM from C. perfringens NanJ in complex with galactose 分子名称: CALCIUM ION, EXO-ALPHA-SIALIDASE, beta-D-galactopyranose 著者 Boraston, A.B, Ficko-Blean, E, Healey, M. 登録日 2007-07-25 公開日 2007-08-21 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Carbohydrate Recognition by a Large Sialidase Toxin from Clostridium Perfringens. Biochemistry, 46, 2007
2WUH	Crystal structure of the DDR2 discoidin domain bound to a triple- helical collagen peptide 分子名称: COLLAGEN PEPTIDE, DISCOIDIN DOMAIN RECEPTOR 2 著者 Carafoli, F, Bihan, D, Stathopoulos, S, Konitsiotis, A.D, Kvansakul, M, Farndale, R.W, Leitinger, B, Hohenester, E. 登録日 2009-10-05 公開日 2009-12-29 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystallographic Insight Into Collagen Recognition by Discoidin Domain Receptor 2 Structure, 17, 2009
5XNR	Truncated AlyQ with CBM32 and alginate lyase domains 分子名称: ACETATE ION, AlyQ, CALCIUM ION, ... 著者 Teh, A.H, Sim, P.F. 登録日 2017-05-24 公開日 2018-06-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Functional and Structural Studies of a Multidomain Alginate Lyase from Persicobacter sp. CCB-QB2. Sci Rep, 7, 2017
6XLT	The 1.48 Angstrom crystal structure of evolved galactose oxidase variant A3.E7 分子名称: ACETATE ION, CALCIUM ION, COPPER (II) ION, ... 著者 Liu, A, Li, J. 登録日 2020-06-29 公開日 2021-02-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.478 Å) 主引用文献 Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission. J.Am.Chem.Soc., 142, 2020
8C5G	Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus) 分子名称: Chlorotoxin, Neuropilin-1 著者 Boros, E, Ecsedi, P, Szakacs, D, Nyitray, L. 登録日 2023-01-09 公開日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus) To Be Published
8AYR	Sialidases and Fucosidases of Akkermansia muciniphila are key for rapid growth on colonic mucin and nutrient sharing amongst mucin-associated human gut microbiota 分子名称: CALCIUM ION, Coagulation factor 5/8 type domain protein 著者 Sakanaka, H, Nielsen, T.S, Pichler, M.J, Nordberg Karlsson, E, Abou Hachem, M, Morth, J.P. 登録日 2022-09-02 公開日 2023-03-01 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria. Nat Commun, 14, 2023
6XLS	The 1.80 Angstrom crystal structure of galactose oxidase variant with genetically incorporated F2-Tyr272 分子名称: ACETATE ION, CALCIUM ION, COPPER (II) ION, ... 著者 Liu, A, Li, J. 登録日 2020-06-29 公開日 2021-02-03 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.797 Å) 主引用文献 Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission. J.Am.Chem.Soc., 142, 2020
6XLR	The 1.23 Angstrom crystal structure of galactose oxidase variant with genetically incorporated Cl2-Tyr272 分子名称: ACETATE ION, CALCIUM ION, COPPER (II) ION, ... 著者 Liu, A, Li, J. 登録日 2020-06-29 公開日 2021-02-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.23 Å) 主引用文献 Formation of Monofluorinated Radical Cofactor in Galactose Oxidase through Copper-Mediated C-F Bond Scission. J.Am.Chem.Soc., 142, 2020
1WCQ	Mutagenesis of the Nucleophilic Tyrosine in a Bacterial Sialidase to Phenylalanine. 分子名称: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, GLYCEROL, SIALIDASE, ... 著者 Newstead, S, Watson, J.N, Bennet, A.J, Taylor, G. 登録日 2004-11-19 公開日 2005-10-12 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Two Nucleophilic Mutants of the Micromonospora Viridifaciens Sialidase Operate with Retention of Configuration by Two Different Mechanisms. Chembiochem, 6, 2005
3CDZ	Crystal structure of human factor VIII 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Ngo, J.C, Huang, M, Roth, D.A, Furie, B.C, Furie, B. 登録日 2008-02-27 公開日 2008-04-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.98 Å) 主引用文献 Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure, 16, 2008
3UES	Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin 分子名称: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, ... 著者 Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H. 登録日 2011-10-31 公開日 2012-04-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains J.Biol.Chem., 287, 2012
5MSX	Glycoside hydrolase BT_3662 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... 著者 Basle, A, Ndeh, D, Rogowski, A, Cartmell, A, Luis, A.S, Venditto, I, Labourel, A, Gilbert, H.J. 登録日 2017-01-06 公開日 2017-03-22 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature, 544, 2017
3UET	Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis D172A/E217A mutant complexed with lacto-N-fucopentaose II 分子名称: 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, SODIUM ION, ... 著者 Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H. 登録日 2011-10-31 公開日 2012-04-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains J.Biol.Chem., 287, 2012
2ZXQ	Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Endo-alpha-N-acetylgalactosaminidase, MANGANESE (II) ION 著者 Suzuki, R, Katayama, T, Ashida, H, Yamamoto, K, Kitaoka, M, Fushinobu, S. 登録日 2009-01-05 公開日 2009-06-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum. J.Biochem., 2009
8TN9	Structural architecture of the acidic region of the B domain of coagulation factor V 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor V 著者 Mohammed, B.M, Basore, K, Summers, B, Pelc, L.A, Di Cera, E. 登録日 2023-08-01 公開日 2023-10-04 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Structural architecture of the acidic region of the B domain of coagulation factor V. J.Thromb.Haemost., 22, 2024

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