PDB: 2824 件ウェブページステータス検索Chemie searchBIRD

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5E23	Human transthyretin (TTR) complexed with (2,7-Dibromo-fluoren-9-ylideneaminooxy)-acetic acid 分子名称: DIMETHYL SULFOXIDE, Transthyretin, {[(2,7-dibromo-9H-fluoren-9-ylidene)amino]oxy}acetic acid 著者 Ciccone, L, Nencetti, S, Rossello, A, Orlandini, E, Stura, E.A. 登録日 2015-09-30 公開日 2016-03-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Synthesis and structural analysis of halogen substituted fibril formation inhibitors of Human Transthyretin (TTR). J Enzyme Inhib Med Chem, 31, 2016
3KLL	Crystal structure of Lactobacillus reuteri N-terminally truncated glucansucrase GTF180-maltose complex 分子名称: CALCIUM ION, GLYCEROL, Glucansucrase, ... 著者 Vujicic-Zagar, A, Pijning, T, Kralj, S, Eeuwema, W, Dijkhuizen, L, Dijkstra, B.W. 登録日 2009-11-08 公開日 2010-11-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a 117 kDa glucansucrase fragment provides insight into evolution and product specificity of GH70 enzymes Proc.Natl.Acad.Sci.USA, 107, 2010
3KLK	Crystal structure of Lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in triclinic apo- form 分子名称: CALCIUM ION, GLYCEROL, Glucansucrase 著者 Vujicic-Zagar, A, Pijning, T, Kralj, S, Eeuwema, W, Dijkhuizen, L, Dijkstra, B.W. 登録日 2009-11-08 公開日 2010-11-03 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of a 117 kDa glucansucrase fragment provides insight into evolution and product specificity of GH70 enzymes Proc.Natl.Acad.Sci.USA, 107, 2010
6Y6J	VIM-2 in Complex with Biapenem Imine and Enamine Hydrolysis Products 分子名称: Biapenem Enamine hydrolysis product, Biapenem Imine hydrolysis product, CHLORIDE ION, ... 著者 Lucic, A, Schofield, C.J, Brem, J, McDonough, M.A. 登録日 2020-02-26 公開日 2021-03-31 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of metallo-beta-lactamase VIM-2 in complex with the imine and enamine form of hydrolysed Biapenem To Be Published
6GZN	Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex 分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*AP*GP*GP*G)-3') 著者 Lenarcic Zivkovic, M, Rozman, J, Plavec, J. 登録日 2018-07-04 公開日 2018-09-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Adenine-Driven Structural Switch from a Two- to Three-Quartet DNA G-Quadruplex. Angew. Chem. Int. Ed. Engl., 57, 2018
7A5Z	Structure of VIM-2 metallo-beta-lactamase with hydrolysed Faropenem imine product 分子名称: (5~{Z})-2-[1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-5-(4-oxidanylbutylidene)-2~{H}-1,3-thiazole-4-carboxylic acid, Beta-lactamase VIM-2, CHLORIDE ION, ... 著者 Lucic, A, Schofield, C.J. 登録日 2020-08-24 公開日 2021-02-24 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Faropenem reacts with serine and metallo-beta-lactamases to give multiple products. Eur.J.Med.Chem., 215, 2021
6ZRM	G-quadruplex with a G-A bulge 分子名称: DNA (5'-D(*TP*GP*GP*GP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*TP*GP*GP*G)-3') 著者 Lenarcic Zivkovic, M, Plavec, J. 登録日 2020-07-13 公開日 2021-05-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of a DNA G-Quadruplex Related to Osteoporosis with a G-A Bulge Forming a Pseudo-loop . Molecules, 25, 2020
7Z60	Human transthyretin (TTR) complexed with Quercetin 3-O-beta-D-galactoside 分子名称: 1,2-ETHANEDIOL, 2-[3,4-bis(oxidanyl)phenyl]-3-[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5,7-bis(oxidanyl)chromen-4-one, IMIDAZOLE, ... 著者 Ciccone, L, Braca, A, Orlandini, E, Nencetti, S. 登録日 2022-03-10 公開日 2022-05-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Antioxidant Quercetin 3-O-Glycosylated Plant Flavonols Contribute to Transthyretin Stabilization Crystals, 12, 2022
3BL5	Crystal structure of QueC from Bacillus subtilis: an enzyme involved in preQ1 biosynthesis 分子名称: MAGNESIUM ION, PHOSPHATE ION, Queuosine biosynthesis protein queC, ... 著者 Cicmil, N, Huang, R.H. 登録日 2007-12-10 公開日 2008-06-03 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Crystal structure of QueC from Bacillus subtilis: An enzyme involved in preQ(1) biosynthesis. Proteins, 72, 2008
1MW4	Solution structure of the human Grb7-SH2 domain in complex with a 10 amino acid peptide pY1139 分子名称: Growth factor receptor-bound protein 7, Receptor protein-tyrosine kinase erbB-2 著者 Ivancic, M, Lyons, B.A. 登録日 2002-09-27 公開日 2003-09-09 最終更新日 2012-05-02 実験手法 SOLUTION NMR 主引用文献 Solution structure of the human Grb7-SH2 domain/erbB2 peptide complex and structural basis for Grb7 binding to ErbB2 J.BIOMOL.NMR, 27, 2003
4NHR	Crystal structure of the outer membrane lipopolysaccharide transport protein LptE (RlpB) 分子名称: DI(HYDROXYETHYL)ETHER, LPS-assembly lipoprotein LptE 著者 Malojcic, G, Kahne, D. 登録日 2013-11-05 公開日 2014-07-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 LptE binds to and alters the physical state of LPS to catalyze its assembly at the cell surface. Proc.Natl.Acad.Sci.USA, 111, 2014
4P05	Bacterial arylsulfate sulfotransferase (ASST) H436N mutant with 4-nitrophenyl sulfate (PNS) in the active site 分子名称: 4-nitrophenyl sulfate, Arylsulfate sulfotransferase AssT, SULFATE ION 著者 Malojcic, G, Owen, R.L, Glockshuber, R. 登録日 2014-02-20 公開日 2014-03-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural and mechanistic insights into the PAPS-independent sulfotransfer catalyzed by bacterial aryl sulfotransferase and the role of the DsbL/Dsbl system in its folding. Biochemistry, 53, 2014
4P07	Bacterial aryl sulfotransferase (ASST) soaked with human urine 分子名称: Arylsulfate sulfotransferase AssT, SULFATE ION 著者 Malojcic, G, Owen, R.L, Glockshuber, R. 登録日 2014-02-20 公開日 2014-03-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Structural and mechanistic insights into the PAPS-independent sulfotransfer catalyzed by bacterial aryl sulfotransferase and the role of the DsbL/Dsbl system in its folding. Biochemistry, 53, 2014
4P04	Apo form of bacterial arylsulfate sulfotransferase (ASST) H436N mutant with MPO in the active site 分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, Arylsulfate sulfotransferase AssT, SULFATE ION 著者 Malojcic, G, Owen, R.L, Glockshuber, R. 登録日 2014-02-20 公開日 2014-03-26 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural and mechanistic insights into the PAPS-independent sulfotransfer catalyzed by bacterial aryl sulfotransferase and the role of the DsbL/Dsbl system in its folding. Biochemistry, 53, 2014
4P06	Bacterial arylsulfate sulfotransferase (ASST) H436N mutant with 4-methylumbelliferyl sulfate (MUS) in the active site 分子名称: (4-methyl-2-oxidanylidene-chromen-7-yl) hydrogen sulfate, Arylsulfate sulfotransferase AssT, SULFATE ION 著者 Malojcic, G, Owen, R.L, Glockshuber, R. 登録日 2014-02-20 公開日 2014-03-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural and mechanistic insights into the PAPS-independent sulfotransfer catalyzed by bacterial aryl sulfotransferase and the role of the DsbL/Dsbl system in its folding. Biochemistry, 53, 2014
8B0A	Cryo-EM structure of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome 分子名称: Chromodomain-helicase-DNA-binding protein 1-like, DNA (149-MER) Widom 601 sequence, Histone H2A type 1, ... 著者 Bacic, L, Gaullier, G, Deindl, S. 登録日 2022-09-07 公開日 2023-09-20 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Asymmetric nucleosome PARylation at DNA breaks mediates directional nucleosome sliding by ALC1. Nat Commun, 15, 2024
7QZH	SFX structure of dye-type peroxidase DtpB D152A variant in the ferric state 分子名称: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE 著者 Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S. 登録日 2022-01-31 公開日 2022-12-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB. Acs Catalysis, 12, 2022
7QZE	SFX structure of dye-type peroxidase DtpB D152A variant in the ferryl state 分子名称: Dyp-type peroxidase family, MAGNESIUM ION, OXYGEN ATOM, ... 著者 Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S. 登録日 2022-01-31 公開日 2022-12-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB. Acs Catalysis, 12, 2022
7QZG	SFX structure of dye-type peroxidase DtpB N245A variant in the ferric state 分子名称: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE 著者 Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S. 登録日 2022-01-31 公開日 2022-12-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB. Acs Catalysis, 12, 2022
7QZF	SFX structure of dye-type peroxidase DtpB D152A/N245A variant in the ferric state 分子名称: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE 著者 Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Owen, R.L, Axford, D, Tosha, T, Sugimoto, H, Owada, S. 登録日 2022-01-31 公開日 2022-12-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB. Acs Catalysis, 12, 2022
5N5Q	Human TTR altered conformation from soaking in iron chloride. 分子名称: ACETATE ION, FE (III) ION, Transthyretin, ... 著者 Ciccone, L, Savko, M, Shepard, W, Stura, E.A. 登録日 2017-02-14 公開日 2018-03-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.53 Å) 主引用文献 Copper mediated amyloid-beta binding to Transthyretin. Sci Rep, 8, 2018
2CKF	Crystal Structure of the Terminal Component of the PAH-hydroxylating Dioxygenase from Sphingomonas sp CHY-1 分子名称: FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, RING-HYDROXYLATING DIOXYGENASE ALPHA SUBUNIT, ... 著者 Jakoncic, J, Meyer, C, Jouanneau, Y, Stojanoff, V. 登録日 2006-04-18 公開日 2007-01-02 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 The Catalytic Pocket of the Ring-Hydroxylating Dioxygenase from Sphingomonas Chy-1. Biochem.Biophys.Res.Commun., 352, 2007
2CGI	Siras structure of tetragonal lysozyme using derivative data collected at the high energy remote Holmium Kedge 分子名称: CHLORIDE ION, LYSOZYME C 著者 Jakoncic, J, Di Michiel, M, Zhong, Z, Honkimaki, V, Jouanneau, Y, Stojanoff, V. 登録日 2006-03-07 公開日 2006-11-13 最終更新日 2019-01-23 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Anomalous Diffraction at Ultra-High Energy for Protein Crystallography. J.Appl.Crystallogr., 39, 2006
5N7C	Human TTR altered conformation from soaking in CuCl2. 分子名称: 1,2-ETHANEDIOL, ACETATE ION, COPPER (II) ION, ... 著者 Ciccone, L, Savko, M, Shepard, W, Stura, E.A. 登録日 2017-02-20 公開日 2018-03-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Copper mediated amyloid-beta binding to Transthyretin. Sci Rep, 8, 2018
5N62	Human TTR crystals soaked in manganese chloride. 分子名称: MANGANESE (II) ION, Transthyretin 著者 Ciccone, L, Savko, M, Shepard, W, Stura, E.A. 登録日 2017-02-14 公開日 2018-03-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Copper mediated amyloid-beta binding to Transthyretin. Sci Rep, 8, 2018

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